cluster # 13228

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13228 cluster # 13228 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13228#0 length = 2345 sequences # 11

consensus_13228#1 length = 422 sequences # 1

consensusID : consensus_13228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2345
fasta sequence

                              [CTTGTCATGGATTAGTGGAGACCGGAGGAAGAAGAGGGAGTAAATAGTGTAGTTGGGGTGACAAGAAAATCAACGGCCGGGTGGGCGGACAATAATTTCATGGTCCTCCCTCCNTCCCTCGCCAACTCCGCCGCCGCCTTCTTCGCCTACTCTTCTTCTTCTTCCACCTCCACTCCATTCCTCCACCTCCACCCACACTAGCCACTAGACTACTAGAGCTGTGGGTGTAGTAGCTAAGAATCAAGATCGATGGGGAAGCCGCCGCGCGCCATGACGCCGGTGGAGGAGGTGGACCTGTCGGCGGTGAGGTACCAGTCGCCGTCGCTGCAGGCGCCGCACCTCACCGGCTTCTCTCTCAGGGCCTTCGTCTGGCTCATGGAGTCGCCCCTATTCGGCCGCCTCCTCACCTCCGTCCTCAAGTCGCAGAACAACATCACAAGGATGCTGCAGGACACGGTGATCCCCGAGCGCCCCATGTACCTCCCCGAGTACCC-CCGCAGGAGCCGGAGCAAGGAGTTTTGCTTCTGGGGGATGACAGGGACCCTGTGGACAGAGTTGAGGAAGCACTTCACTGCCTCCCGCCCCATGATCCGTCTCTGCGTTGGCCGGCCGGGGACAAACCCCCTTTCCTCTACTGGAAGATCCGTGATTTTGCGCATGCGTACCGCTCCGGGATCACAACCCCGTCTGTTGTTGCGGAGCATATCATTGCCGGTGTGGAAGAGTGGAGCAACAAGAAGCCTCCCATGCCTATGTTGGTTTATTTTAACGCAGATGATCTAAGGAAACAAGCTGAAGCTTCCACAAAGAGATTTCAGCAAGGAAACCCAATTTCCATCTTGGACGGGATCTTTATCGCCATTAAGGATGACATTGACTGCTTCCCATATCCATCAAAGGGTGCTACTACATTTTTCGACAAAATTCGCTCTGTGGAGAAAGACGCAGTTTGTGTTGCTCGTTTGCGGAAATGTGGAGTGTTATTCATTGGGAAAGCTAATATGCATGAGCTAGGCCTTGGAGTAACTGGAAACAATCCAAACTATGGAACAGCAAGAAATCCACATTCAATTGATAGATATACTGGTGGTTCTTCATCAGGTCCAGCTGCACTAGTCTCATCAGGGTTATGCTCAGCAGCAATTGGAACAGATGGTGGAGGTTCTGTTAGGATACCATCTTCTCTATGTGGCATTATTGGTTTGAAGACAACCTACGGACGGACAGATATGACTGGGGCACTTTGTGATTGTGGGACCGTTGAAGTTGCTTCTCCTCTAGCAGCTTCAGTGGAGGATGCTTTGCTAGTGTATTCTGCAATAGCAGGCTCTAGGCCTATGGATAAGCTTACCCTGAGACCATCACCGCTCTGTGTCCCTAATTTGGTGTCTCCTGACAACAACAATATACTGGGATCGGTGAAAATAGGAAAATATACTGAGTGGTTTCATGATGTCTCCGATCGTGATATCTCTAATACATGTGAGGATGCACTTAACCTTCTTTGCAGCAGCTTCGGATGTCAAATAGAAGAAATAATACTGCCAGAACTTGAGGAGATGCGTACTG-CCCATGTTGTCTCAATTGG-CACAGAAT-CATTCTGTGATTTGAAT-CCTCATTACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTGGATCATTCACTTCGACTGACTATGCTGCTTCTCAACGAATAAGGAGAAGGATAATGTACTATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTTCTT-GGTTTGCCCGCGATAACTGTACCTGTTGGTC-ATGATAAGCAAGGGCTT-CCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCGAGGCTAGCTTATT-AAGGGTGGCTTCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAACGGCCATC-TGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA-TCAATGA-TGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGT-ACAGTGCAGATGATTC-AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA-ATGGA-GGGCTAACGCACATTT-GTAT-GGACAGTCCTGTAAATTACTGGCGCAGGCATTG-TGTGATTGGGTCAGTGTTTGTGATATAGTAGGCCTTGTTTAGTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS2349A             [CTTGTCATGGATTAGTGGAGACCGGAGGAAGAAGAGGGAGTAAATAGTGTAGTTGGGGTGACAAGAAAATCAACGGCCGGGTGGGCGGACAATAATTTCATGGTCCTCCCTCCNTCCCTCGCCAACTCCGCCGCCGCCTTCTTCGCCTACTCTTCTTCTTCTTCCACCTCCACTCCATTCCTCCACCTCCACCCACACTAGCCACTAGACTACTAGAGCTGTGGGTGTAGTAGCTAAGAATCAAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK101740             [                                                                                                                                         CTTCTTCGCCTACTCTTCTTCTTCTTCCACCTCCACTCCATTCCTCCACCTCCACCCACACTAGCCACTAGACTACTAGAGCTGTGGGTGTAGTAGCTAAGAATCAAGATCGATGGGGAAGCCGCCGCGCGCCATGACGCCGGTGGAGGAGGTGGACCTGTCGGCGGTGAGGTACCAGTCGCCGTCGCTGCAGGCGCCGCACCTCACCGGCTTCTCTCTCAGGGCCTTCGTCTGGCTCATGGAGTCGCCCCTATTCGGCCGCCTCCTCACCTCCGTCCTCAAGTCGCAGAACAACATCACAAGGATGCTGCAGGACACGGTGATCCCCGAGCGCCCCATGTACCTCCCCGAGTACCC CCGCAGGAGCCGGAGCAAGGAGTTTTGCTTCTGGGGGATGACAGGGACCCTGTGGACAGAGTTGAGGAAGCACTTCACTGCCTCCCGCCCCATGATCCGTCTCTGCGTTGGCCGGCCGGGGACAAACCCCCTTTCCTCTACTGGAAGATCCGTGATTTTGCGCATGCGTACCGCTCCGGGATCACAACCCCGTCTGTTGTTGCGGAGCATATCATTGCCGGTGTGGAAGAGTGGAGCAACAAGAAGCCTCCCATGCCTATGTTGGTTTATTTTAACGCAGATGATCTAAGGAAACAAGCTGAAGCTTCCACAAAGAGATTTCAGCAAGGAAACCCAATTTCCATCTTGGACGGGATCTTTATCGCCATTAAGGATGACATTGACTGCTTCCCATATCCATCAAAGGGTGCTACTACATTTTTCGACAAAATTCGCTCTGTGGAGAAAGACGCAGTTTGTGTTGCTCGTTTGCGGAAATGTGGAGTGTTATTCATTGGGAAAGCTAATATGCATGAGCTAGGCCTTGGAGTAACTGGAAACAATCCAAACTATGGAACAGCAAGAAATCCACATTCAATTGATAGATATACTGGTGGTTCTTCATCAGGTCCAGCTGCACTAGTCTCATCAGGGTTATGCTCAGCAGCAATTGGAACAGATGGTGGAGGTTCTGTTAGGATACCATCTTCTCTATGTGGCATTATTGGTTTGAAGACAACCTACGGACGGACAGATATGACTGGGGCACTTTGTGATTGTGGGACCGTTGAAGTTGCTTCTCCTCTAGCAGCTTCAGTGGAGGATGCTTTGCTAGTGTATTCTGCAATAGCAGGCTCTAGGCCTATGGATAAGCTTACCCTGAGACCATCACCGCTCTGTGTCCCTAATTTGGTGTCTCCTGACAACAACAATATACTGGGATCGGTGAAAATAGGAAAATATACTGAGTGGTTTCATGATGTCTCCGATCGTGATATCTCTAATACATGTGAGGATGCACTTAACCTTCTTTGCAGCAGCTTCGGATGTCAAATAGAAGAAATAATACTGCCAGAACTTGAGGAGATGCGTACTG CCCATGTTGTCTCAATTGG CACAGAAT CATTCTGTGATTTGAAT CCTCATTACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTGGATCATTCACTTCGACTGACTATGTTGCTTCTCAACGAATAAGGAGAAGGATAATGTACTATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTTCTT GGTTTGCCCGCGATAACTGTACCTGTTGGTC ATGATAAGCAAGGGCTT CCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCGAGGCTAGCTTATT AAGGGTGGCTTCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAACGGCCATC TGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA TCAATGA TGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGT ACAGTGCAGATGATTC AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA ATGGA                                                                                                                                                ]
[+] EMBL CB643403             [                                                                                                                                                                                                                ACTACTAGAGCTGTGGGTGTAGTAGCTAAGAATCAAGATCGATGGGGAAGCCGCCGCGCGCCATGACGCCGGTGGAGGAGGTGGACCTGTCGGCGGTGAGGTACCAGTCGCCGTCGCTGCAGGCGCCGCACCTCACCGGCTTCTCTCTCAGGGCCTTCGTCTGGCTCATGGAGTCGCCCCTATTCGGCCGCCTCCTCACCTCCGTCCTCAAGTCGCAGAACAACATCACAAGGATGCTGCAGGACACGGTGATCCCCGAGCGCCCCATGTACCTCCCCGAGTACCCGCCGCAGGAGCCGGAGCAAGGAGTTTTGCTTCTGGGGGATGACAGGGACCCTGTGGACAGAGTTGAGGAAGCACTTCACTGCCTCCCGCCCTATGATCCGTCTCTGCGTTGGCCGGCCGGGGACAAACCCCCTTTCCTCTACTGGAAGATCCGTGATTTTGCGCATGCGTACCGCTCCGGGATCACAACCCCGTCTGTTGTTGCGGAGCATATCATTGCCGGTGTGGAAGAGTGGAGCAACAAGAAGCCTCCCATGCCTATGTTGGTTTATTTTAACGCAGATGATCTAAGGAAACAAGCTGAAGCTTCCACAAAGAGATTTCAGCAAGGAAACCCAATTTCCATCTTGGACGGGATCTTTATCGCCATTAAGGATGACATTGACTGCTTCCCATATCCATCAAAGGGTGCTACTACATTTTTCGACAAAATTCGCTCTGTGGAGAAAGACGCAGTTTGTGTTGCTCGTTTGCGGAAATGTGGAGTGTTATTCATTGGNGAAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB643404             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TATACTGAGTGGTTTCATGATGTCTCCGATCGTGATATCTCTAATACATGTGAGGATGCACTTAACCTTCTTTGCAGCAGCTTCGGATGTCAAATAGAAGAAATAATACTGCCAGAACTTGAGGAGATGCGTACTG CCCATGTTGTCTCAATTGG CACAGAAT CATTCTGTGATTTGAAT CCTCATTACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTGGATCATTCACTTCGACTGACTATGTTGCTTCTCAACGAATAAGGAGAAGGATAATGTACTATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTTCTT GGTTTGCCCGCGATAACTGTACCTGTTGGTC ATGATAAGCAAGGGCTT CCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCGAGGCTAGCTTATT AAGGGTGGCTTCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAACGGCCATC TGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA TCAATGA TGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGT ACAGTGCAGATGATTC AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA ATGGA GGGCTAACGCACATTT GTAT GGACAGTCCTGTAAAT                                                                                                         ]
[+] EMBL C99691               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tcccggGAAATAATACTNCCAGACCTTGAGGAGATGCNTACTGCCCCATGTTGTCTCAATTGGCCACAGAATCCATTCTGTGATTTGAATCCCTCATTACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTGGATCATTCAC TCGACTGACTATGCTGCTTCTCAACGAAT AGGAGAAGGATAATGTACTATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTTCTT GGTTTGCCCGCGATAACTGTACCTGTTGGTC ATGATAAGCAAGGGCTTCCCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCGAGGCTAGCTTATTNAAGGGTGGCTTCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAACGGCCATC TGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA TCAATGA TGTATGGCACTTGGTG TACGCTTTTATTCAGAACATTTGT ACAGTGCAGATGATTC AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA ATGGA GGG TAACGCACATTT GTAT GGACAGTCCTGTAAATTACTGGCGCAGGCATTG TGTGATTGGGTCAGTGTTTGTGATATAGTAGGCCTTGTTTAGTTCCCAAAAAAAAA                               ]
[+] EMBL C91602               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGCCAGAACTTGAGGAGATGCGTACTG CCCATGTTGTCTCAATTGG CACAGAAT CATTCTGTGATTTGAAT CCTCATTACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTGGATCATTCACTTCGACTGACTATGCTGCTTCTCAACGAATAAGGAGAAGGATAATGTACTATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTNCTTGGGTTTGTCCGCGATAACTGTACCTGTTGGGCAATGATAAGCAAGGGCTT CC                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU164265             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGCCAGAACTTGAGGAGATGCGTACTG CCCATGTTGTCTCAATTGG CACAGAAT CATTCTGTGATTTGAAT CCTCATTACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTGGATCATTCACTTCGACTGACTATGCTGCTTCTCAACGAATAAGGAGAAGGATAATGTACTATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTGCTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTTACCTGATGCGATTCGTGATAGCTGGCAATCTTCTT GGGTTGCCCGCGATAACTGTACCTGTTNGTC ATGNTAAGCAAAGGGTT TCNATAGGg                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C74666               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGGCTT CCTATAGGCTTGCAACTNATAGGTCGACCATNGGGCGAGGCTAGCTTATT AAGGGTGGCTTCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAACNGCCATC TGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA TCAATGA TGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGT ACAGTGCAGATGATTC AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA ATGGANGGGCTAACGCACTTTTGGTATGGGACAGTCCTGTAAATTACTGGCGCAGGCATTGTTGTGAT                                                                                 ]
[+] EMBL AU164169             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAACGGCCATC TGCA TTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA TCAATGA TGTATGGCACTTGGTG TACGCTTTTATTCAGAACATTTGT ACAGTGCAGATGATTC AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA ATGGA GGG TAACGCACATTT GTAT GGACAGTCCTGTAAATTACTGGCGCAGGCATTG TGTGATTGGGTCAGTGTTTGTGATATAGTAGGCCTTGTTTAGTTCCCAAAAAAAAA                               ]
[+] EMBL AU086032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAAACGGCCATCNTGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCA TCAATGA TGTATGGCACTTGGT  TACGCTTTTATTCAGAACATTTGT ACAGTGCAGATGATTC AGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCA ATGGA  GGNTAACGCACATTT GTAT GGACAGTCCTGTAAATTACTGGCGCAGGCATTG TGTGATTGGGTCAGTGTTTNTGATATAGTAGGCCTTNTTTANTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI810710             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCAGTCAATGATTGTAT GCACTTGGTGCTACGCTGTTAGTCAGAACATTTGTGACAGTGCAGATGATTCAAGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCACATGGA GGGCTAACGCACATTT GTAT GGACAGTCCTGTAAATTACTG                                                                                                    ]




>consensus_13228#0
CTTGTCATGGATTAGTGGAGACCGGAGGAAGAAGAGGGAGTAAATAGTGTAGTTGGGGTG
ACAAGAAAATCAACGGCCGGGTGGGCGGACAATAATTTCATGGTCCTCCCTCCNTCCCTC
GCCAACTCCGCCGCCGCCTTCTTCGCCTACTCTTCTTCTTCTTCCACCTCCACTCCATTC
CTCCACCTCCACCCACACTAGCCACTAGACTACTAGAGCTGTGGGTGTAGTAGCTAAGAA
TCAAGATCGATGGGGAAGCCGCCGCGCGCCATGACGCCGGTGGAGGAGGTGGACCTGTCG
GCGGTGAGGTACCAGTCGCCGTCGCTGCAGGCGCCGCACCTCACCGGCTTCTCTCTCAGG
GCCTTCGTCTGGCTCATGGAGTCGCCCCTATTCGGCCGCCTCCTCACCTCCGTCCTCAAG
TCGCAGAACAACATCACAAGGATGCTGCAGGACACGGTGATCCCCGAGCGCCCCATGTAC
CTCCCCGAGTACCCCCGCAGGAGCCGGAGCAAGGAGTTTTGCTTCTGGGGGATGACAGGG
ACCCTGTGGACAGAGTTGAGGAAGCACTTCACTGCCTCCCGCCCCATGATCCGTCTCTGC
GTTGGCCGGCCGGGGACAAACCCCCTTTCCTCTACTGGAAGATCCGTGATTTTGCGCATG
CGTACCGCTCCGGGATCACAACCCCGTCTGTTGTTGCGGAGCATATCATTGCCGGTGTGG
AAGAGTGGAGCAACAAGAAGCCTCCCATGCCTATGTTGGTTTATTTTAACGCAGATGATC
TAAGGAAACAAGCTGAAGCTTCCACAAAGAGATTTCAGCAAGGAAACCCAATTTCCATCT
TGGACGGGATCTTTATCGCCATTAAGGATGACATTGACTGCTTCCCATATCCATCAAAGG
GTGCTACTACATTTTTCGACAAAATTCGCTCTGTGGAGAAAGACGCAGTTTGTGTTGCTC
GTTTGCGGAAATGTGGAGTGTTATTCATTGGGAAAGCTAATATGCATGAGCTAGGCCTTG
GAGTAACTGGAAACAATCCAAACTATGGAACAGCAAGAAATCCACATTCAATTGATAGAT
ATACTGGTGGTTCTTCATCAGGTCCAGCTGCACTAGTCTCATCAGGGTTATGCTCAGCAG
CAATTGGAACAGATGGTGGAGGTTCTGTTAGGATACCATCTTCTCTATGTGGCATTATTG
GTTTGAAGACAACCTACGGACGGACAGATATGACTGGGGCACTTTGTGATTGTGGGACCG
TTGAAGTTGCTTCTCCTCTAGCAGCTTCAGTGGAGGATGCTTTGCTAGTGTATTCTGCAA
TAGCAGGCTCTAGGCCTATGGATAAGCTTACCCTGAGACCATCACCGCTCTGTGTCCCTA
ATTTGGTGTCTCCTGACAACAACAATATACTGGGATCGGTGAAAATAGGAAAATATACTG
AGTGGTTTCATGATGTCTCCGATCGTGATATCTCTAATACATGTGAGGATGCACTTAACC
TTCTTTGCAGCAGCTTCGGATGTCAAATAGAAGAAATAATACTGCCAGAACTTGAGGAGA
TGCGTACTGCCCATGTTGTCTCAATTGGCACAGAATCATTCTGTGATTTGAATCCTCATT
ACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTG
GATCATTCACTTCGACTGACTATGCTGCTTCTCAACGAATAAGGAGAAGGATAATGTACT
ATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTG
CTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTT
ACCTGATGCGATTCGTGATAGCTGGCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTG
TTGGTCATGATAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCG
AGGCTAGCTTATTAAGGGTGGCTTCTGCAATCGAGGAGCTCTGTCTGCAGAAGCGGAAAC
GGCCATCTGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCCAT
CAATGATGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACAGTGCAGATGA
TTCAGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCAATGGAGGGCTAACGCACATT
TGTATGGACAGTCCTGTAAATTACTGGCGCAGGCATTGTGTGATTGGGTCAGTGTTTGTG
ATATAGTAGGCCTTGTTTAGTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

consensusID : consensus_13228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CCGATTCGTGATACTGCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTGTTGGTCATGATAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCCTGGGCGAGGCTAGCTTATTAAGGGTGGCTTCTGCCAATCGAGGAGCTCTGTCTGAAGAAGCGGATGACGGCCATCTGCATTTCATGACATCCTGAACGCTTGAGTTGACCAATTATGTATCCATCCCTCCATGATGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACCGTGCAGATGATTCAGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCCATGGAGGGCTAACGCACATTTGTATGGACAGTCCGTAAATTACTGGCCCAGCCNTGTTTAGTTCCCCAATTTTTTTTCCCAAAAAAAAAA]

[+] EMBL BM420893             [CCGATTCGTGATACTGCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTGTTGGTCATGATAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCCTGGGCGAGGCTAGCTTATTAAGGGTGGCTTCTGCCAATCGAGGAGCTCTGTCTGAAGAAGCGGATGACGGCCATCTGCATTTCATGACATCCTGAACGCTTGAGTTGACCAATTATGTATCCATCCCTCCATGATGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACCGTGCAGATGATTCAGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCCATGGAGGGCTAACGCACATTTGTATGGACAGTCCGTAAATTACTGGCCCAGCCNTGTTTAGTTCCCCAATTTTTTTTCCCAAAAAAAAAA]




>consensus_13228#1
CCGATTCGTGATACTGCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTGTTGGTCATG
ATAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCCTGGGCGAGGCTAGCTT
ATTAAGGGTGGCTTCTGCCAATCGAGGAGCTCTGTCTGAAGAAGCGGATGACGGCCATCT
GCATTTCATGACATCCTGAACGCTTGAGTTGACCAATTATGTATCCATCCCTCCATGATG
TATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACCGTGCAGATGATTCAGTCT
TTCCTGGTGTTGGATGTAATAAAAGTTTCCCCATGGAGGGCTAACGCACATTTGTATGGA
CAGTCCGTAAATTACTGGCCCAGCCNTGTTTAGTTCCCCAATTTTTTTTCCCAAAAAAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13228#0      CTTGTCATGGATTAGTGGAGACCGGAGGAAGAAGAGGGAGTAAATAGTGTAGTTGGGGTG 60
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ACAAGAAAATCAACGGCCGGGTGGGCGGACAATAATTTCATGGTCCTCCCTCCNTCCCTC 120
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GCCAACTCCGCCGCCGCCTTCTTCGCCTACTCTTCTTCTTCTTCCACCTCCACTCCATTC 180
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      CTCCACCTCCACCCACACTAGCCACTAGACTACTAGAGCTGTGGGTGTAGTAGCTAAGAA 240
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TCAAGATCGATGGGGAAGCCGCCGCGCGCCATGACGCCGGTGGAGGAGGTGGACCTGTCG 300
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GCGGTGAGGTACCAGTCGCCGTCGCTGCAGGCGCCGCACCTCACCGGCTTCTCTCTCAGG 360
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GCCTTCGTCTGGCTCATGGAGTCGCCCCTATTCGGCCGCCTCCTCACCTCCGTCCTCAAG 420
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TCGCAGAACAACATCACAAGGATGCTGCAGGACACGGTGATCCCCGAGCGCCCCATGTAC 480
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      CTCCCCGAGTACCCCCGCAGGAGCCGGAGCAAGGAGTTTTGCTTCTGGGGGATGACAGGG 540
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ACCCTGTGGACAGAGTTGAGGAAGCACTTCACTGCCTCCCGCCCCATGATCCGTCTCTGC 600
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GTTGGCCGGCCGGGGACAAACCCCCTTTCCTCTACTGGAAGATCCGTGATTTTGCGCATG 660
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      CGTACCGCTCCGGGATCACAACCCCGTCTGTTGTTGCGGAGCATATCATTGCCGGTGTGG 720
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      AAGAGTGGAGCAACAAGAAGCCTCCCATGCCTATGTTGGTTTATTTTAACGCAGATGATC 780
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TAAGGAAACAAGCTGAAGCTTCCACAAAGAGATTTCAGCAAGGAAACCCAATTTCCATCT 840
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TGGACGGGATCTTTATCGCCATTAAGGATGACATTGACTGCTTCCCATATCCATCAAAGG 900
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GTGCTACTACATTTTTCGACAAAATTCGCTCTGTGGAGAAAGACGCAGTTTGTGTTGCTC 960
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GTTTGCGGAAATGTGGAGTGTTATTCATTGGGAAAGCTAATATGCATGAGCTAGGCCTTG 1020
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GAGTAACTGGAAACAATCCAAACTATGGAACAGCAAGAAATCCACATTCAATTGATAGAT 1080
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ATACTGGTGGTTCTTCATCAGGTCCAGCTGCACTAGTCTCATCAGGGTTATGCTCAGCAG 1140
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      CAATTGGAACAGATGGTGGAGGTTCTGTTAGGATACCATCTTCTCTATGTGGCATTATTG 1200
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GTTTGAAGACAACCTACGGACGGACAGATATGACTGGGGCACTTTGTGATTGTGGGACCG 1260
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TTGAAGTTGCTTCTCCTCTAGCAGCTTCAGTGGAGGATGCTTTGCTAGTGTATTCTGCAA 1320
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TAGCAGGCTCTAGGCCTATGGATAAGCTTACCCTGAGACCATCACCGCTCTGTGTCCCTA 1380
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ATTTGGTGTCTCCTGACAACAACAATATACTGGGATCGGTGAAAATAGGAAAATATACTG 1440
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      AGTGGTTTCATGATGTCTCCGATCGTGATATCTCTAATACATGTGAGGATGCACTTAACC 1500
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TTCTTTGCAGCAGCTTCGGATGTCAAATAGAAGAAATAATACTGCCAGAACTTGAGGAGA 1560
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      TGCGTACTGCCCATGTTGTCTCAATTGGCACAGAATCATTCTGTGATTTGAATCCTCATT 1620
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ACAGAGCAGGAAAACGAACTGAATTTACGTTAGACACTCGAACAAGTTTGGCACTTTTTG 1680
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      GATCATTCACTTCGACTGACTATGCTGCTTCTCAACGAATAAGGAGAAGGATAATGTACT 1740
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ATCACAATGAAGCTTTCAAGAAGGTTGATGTCATAGCAACTCCTACAACTGGCATCACTG 1800
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      CTCCAGAAATACCACAAAGTTCTCTGAAGTTAGGAGAGTCCAATTACGTTGTGTCAGCTT 1860
consensus_13228#1      ------------------------------------------------------------
                                                                                   

consensus_13228#0      ACCTGATGCGATTCGTGATAGCTGGCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTG 1920
consensus_13228#1      -------CCGATTCGTGATACT--GCAATCTTCTTGGTTTGCCCGCGATAACTGTACCTG 51
                               ************    ************************************

consensus_13228#0      TTGGTCATGATAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCATGGGGCG 1980
consensus_13228#1      TTGGTCATGATAAGCAAGGGCTTCCTATAGGCTTGCAACTGATAGGTCGACCCTGGG-CG 110
                       **************************************************** **** **

consensus_13228#0      AGGCTAGCTTATTAAGGGTGGCTTCTGC-AATCGAGGAGCTCTGTCTGCAGAAGCGGA-A 2038
consensus_13228#1      AGGCTAGCTTATTAAGGGTGGCTTCTGCCAATCGAGGAGCTCTGTCTGAAGAAGCGGATG 170
                       **************************** ******************* *********  

consensus_13228#0      ACGGCCATCTGCATTTCATGACATCCTGAACGCTTGAGTTGACAAATTATGTATCCATCC 2098
consensus_13228#1      ACGGCCATCTGCATTTCATGACATCCTGAACGCTTGAGTTGACCAATTATGTATCCATCC 230
                       ******************************************* ****************

consensus_13228#0      ATCAATGATGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACAGTGCAGAT 2158
consensus_13228#1      CTCCATGATGTATGGCACTTGGTGCTACGCTTTTATTCAGAACATTTGTACCGTGCAGAT 290
                        ** *********************************************** ********

consensus_13228#0      GATTCAGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCAATGGAGGGCTAACGCACA 2218
consensus_13228#1      GATTCAGTCTTTCCTGGTGTTGGATGTAATAAAAGTTTCCCCATGGAGGGCTAACGCACA 350
                       ***************************************** ******************

consensus_13228#0      TTTGTATGGACAGTCCTGTAAATTACTGGCGCAGGCATTGTGTGATTGGGTCAGTGTTTG 2278
consensus_13228#1      TTTGTATGGACAGTCC-GTAAATTACTGGCCCAGCCNT-GTTTAGTTCCCCAATTTTTTT 408
                       **************** ************* *** * * ** *  **     * * *** 

consensus_13228#0      TGATATAGTAGGCCTTGTTTAGTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2338
consensus_13228#1      TCCCAAAAAAAAAA---------------------------------------------- 422
                       *   * *  *                                                  

consensus_13228#0      AAAAAAA 2345
consensus_13228#1      -------