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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1758 fasta sequence
[GCTGCCCGAGAGCCGTACGTACTACAGAAATACAAGTGCTAACTTAGCTTATTAGCGGATAATCCCCCCAGCGAGCGAGCGAGCGAGGCTGCTGCTGCGAAATGATGACACTGTCGACGTCGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCAAGGCCGTGGCCGCGCTGTGCGTGGCGAGCTTTGTCGTGGGCTTGCTGCTCAGCGGCCGGGTGGTGGTGCCGTTGCTACCTCCGGGCTCGTCGTCGCCGGCGAGCAACTACAAGACGTCCTTCTCTACTTGCTTCGAGAACAAACGCGTTAAGTTAGGCGAGANNAATCCAACGGACATCATGAACGAGGT-TCCAGG-CTTACCACGGAATCCAGTCCCTGGCAAAGGCGGTTTTTTTTTTGGAGATGGAGCTCGCCGTGGAGCGCGCTCGGAGCAGCGCCGCCGTCGGCGCCGGCACGGCCGTCTCATCCCTGGGCCCACAGAAGGCCTTCGTCGTGATCGGCATCAACACCGCCTTCAGCAGCAAGAAGCGCCGCGACTCCCTCCGCGACACCTGGGTCCCTAGAGGGGATAAGCTGAGGAGGCTGGAGAAGGAGAAGGGGATCGTGATCCGGTTCGTGATCGGGCGGAGCGGCGCGGCGGCGGCGGGCGACGGGCCGCTGGACCGCGCGGTGGACGCGGAGGACGCCGAGAACAAGGACTTCCTGCGGCTGGATCACGTGGAGGGCTACCACGAGCTGTCCTCCAAGACCAGGGTCTACTTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACGTCCACGTCAACCTCGGGATGCTGACGAGCAGGCTGGCCAAGTACAGGACACGACCGAGGGTGTACGTCGGCTGCATGAAGTCCGGACCTGTTCTGTCGCAGAAGGGAGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCGTTTCCAAGGATCTCGCCGCCTACATCTCCATCAACCAGCCGATCCTGCACAGGTTCGCAAACGAGGACGTCTCCCTCGGCGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGCAGCATGTGCTGCGCCACGCCGCCAGATTGCGAGTGGAAGAAGCGAGCTGGGAACGTGTGCGTGGCGTCGTTCGATTGGTCGTGCAGTGGGGTCTGCAAGTCAGTGGACAGGATGAAGCACATCCACAGGGCCTGCGGCGAAGGCCAGGGAGCAGTCTGGAGCGTCGCTACGTGATGATCACATCATCAGCTTTAATCGTAGCATTAATCTTTGGTTTTATGATGGTGCAAAGCAGCTAGCGGGCGACGAGGGGACTAGTTTAACTGAATGATCGATTGTTTCAGATGATTAGGAAACGAGCCACGTAGAATGGATGAACGTGCATGATGGTGGAAAATGGAAATGCATGGGTGGTAACTGTAAAAGTGTAAAGGCTTTAGCATCCAATTTCCAGGGGGAGTTGGGTCATGCCATATGCTTCACTTATTAATCACAGCTCTTTCTGCATTTTTAAGGGCTCCTTCAGAACGCAAGTTTTTTTTTATGATTAGTTGAATTCTTATAGTCACCCTTTATATAGTTCGTTTACCTTTCAAAAAGTGCAGCCGTGAGATGTAATTTCTACTCTCAAACTAAAAAAAGGCTGAAGGATGCAGAAGGAACTTT]
[+] EMBL C91866 [GCTGCCCGAGAGCCGTACGTACTACAGAAATACAAGTGCTAACTTAGCTTATTAGCGGATAATCCCCCCAGCGAGCGAGCGAGCGAGGCTGCTGCTGCGAAATGATGACACTGTCGACGTCGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCAAGGCCGTGGCCGCGCTGTGCGTGGCGAGCTTTGTCGTGGGCTTGCTGCTCAGCGGCCGGGTGGTGGTGCCGTTGCTACCTCCGGGCTCGTCGTCGCCGGCGAGCAACTACAAGACGTCCTTCTCTACTTGCTTCGAGAACAAACGCGTTAAGTTAGGCGAGANNAATCCAACGGACATCATGAACGAGGT TCCAGG CTTACCACGGAATCCAGTCCCTGGCAAAGGCGGTTTTTTTTT ]
[+] EMBL AK106754 [ ACAGAAATACAAGTGCTAACTTAGCTTATTAGCGGATAATCCCCCCAGCGAGCGAGCGAGCGAGGCTGCTGCTGCGAAATGATGACACTGTCGACGTCGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCAAGGCCGTGGCCGCGCTGTGCGTGGCGAGCTTTGTCGTGGGCTTGCTGCTCAGCGGCCGGGTGGTGGTGCCGTTGCTACCTCCGGGCTCGTCGTCGCCGGCGAGCAACTACAAGACGTCCTTCTCTACTGGCTGCGAGAACAAACGCGCTAAGCTAGGCGAGAGCAATCCAACGGACATCATGAACGAGGTGTCCAGGACCCACCACGCAATCCAGTCCCTGGACAAGGCGGTGTCTTCTCTGGAGATGGAGCTCGCCGTGGAGCGCGCTCGGAGCAGCGCCGCCGTCGGCGCCGGCACGGCCGTCTCATCCCTGGGCCCACAGAAGGCCTTCGTCGTGATCGGCATCAACACCGCCTTCAGCAGCAAGAAGCGCCGCGACTCCCTCCGCGACACCTGGGTCCCTAGAGGGGATAAGCTGAGGAGGCTGGAGAAGGAGAAGGGGATCGTGATCCGGTTCGTGATCGGGCGGAGCGGCGCGGCGGCGGCGGGCGACGGGCCGCTGGACCGCGCGGTGGACGCGGAGGACGCCGAGAACAAGGACTTCCTGCGGCTGGATCACGTGGAGGGCTACCACGAGCTGTCCTCCAAGACCAGGGTCTACTTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACGTCCACGTCAACCTCGGGATGCTGACGAGCAGGCTGGCCAAGTACAGGACACGACCGAGGGTGTACGTCGGCTGCATGAAGTCCGGACCTGTTCTGTCGCAGAAGGGAGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACAAGTACTTCCGCCACGCCACCGGCCAAATCTACGCCGTTTCCAAGGATCTCGCCGCCTACATCTCCATCAACCAGCCGATCCTGCACAGGTTCGCAAACGAGGACGTCTCCCTCGGCGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGCAGCATGTGCTGCGCCACGCCGCCAGATTGCGAGTGGAAGAAGCGAGCTGGGAACGTGTGCGTGGCGTCGTTCGATTGGTCGTGCAGTGGGGTCTGCAAGTCAGTGGACAGGATGAAGCACATCCACAGGGCCTGCGGCGAAGGCCAGGGAGCAGTCTGGAGCGTCGCTACGTGATGATCACATCATCAGCTTTAATCGTAGCATTAATCTTTGGTTTTATGATGGTGCAAAGCAGCTAGCGGGCGACGAGGGGACTAGTTTAACTGAATGATCGATTGTTTCAGATGATTAGGAAACGAGCCACGTAGAATGGATGAACGTGCATGATGGTGGAAAATGGAAATGCATGGGTGGTAACTGTAAAAGTGTAAAGGCTTTAGCATCCAATTTCCAGGGGGAGTTGGGTCATGCCATATGCTTCACTTATTAATCACAGCTCTTTCTGCATTTTTAAGGGCTCCTTCAGAACGCAAGTTTTTTTTTATGATTAGTTGAATTCTTATAGTCACCCTTTATATAGTTCGTTTACCTTTCAAAAAGTGCAGCCGTGAGATGTAATTTCTACTCTCAAACTAAAAAAAGGCTGAAGGATGCAGAAGGAACTTT]
[+] EMBL CA766088 [ CTTCCGCCACGCCACCGGCCAAATCTACGCCGTTTCCAAGGATCTCGCCGCCTACATCTCCATCAACCAGCCGATCCTGCACAGGTTCGCAAACGAGGACGTCTCCCTCGGCGCGTGGCTGATCGGGCTCGAGGTCGAGCACGTCGACGACCGCAGCATGTGCTGCGCCACGCCGCCAGATTGCGAGTGGAAGAAGCGAGCTGGGAACGTGTGCGTGGCGTCGTTCGATTGGTCGTGCAGTGGGGTCTGCAAGTCAGTGGACAGGATGAAGCACATCCACAGGGCCTGCGGCGAAGGCCAGGGAGCAGTCTGGAGCGTCGCTACGTGATGGTCACATCATCAGCTTTAATCGTAGCATTAATCTTTGGTTTTATGATGGTGCAAAGCAGCTAGCGGGCGACGAGGGGACTAGTTTAACTGAATGATCGATTGTTTCAGATGATTAGGAAACGAGCCACGTAGAATGGATGAACGTGCATGATGGTGGAAAATGGAAATGCATGGGTGGTAACTGTAAAAGTGTAAAGGCTCTAGCATCCAATTTCCAGGGGGAGTTGGGTCATGCCATATGCTTCACTTATTAATCACAGCTCTTTCTGCAT ]
[+] EMBL AU166151 [ AACGTGTGCGTGNCGTCGTTCGATTGGTCGTGCAGTGGGGTCTGCAAGTCAGTGGACAGGATGAAGCACATCCACAGG CTGCGGCGAAGGCCAGGGAGCAGTCTGGAGCGTCGCTACGTGATGATCACATCATCAGCTTTAATCGTAGCATTAATCTTTGGTTTTATGATGGTGCAAAGCAGCTAGCGGGCGACGAGGGGACTAGTTTAACTGAATGATCGATTGTTTCAGATGATTAGGAAACGAGCCACGTAGAATGGATGAACGTGCATGATGGTGGAAAATGGAAATGCATGGGTGGTAACTGTAAAAGTGTAAAGGCTTTAGCATCCAATTTCCAGGGGGAGTTGGGTCATGCCATATGCTTCACTTATTAATCACAGCTCTTTCTGCATTTTTAAGGGCTCCTTCAGAAaaaaaa ]
consensusID : consensus_13231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1617 fasta sequence
[GGCCGTCGTCGTGCTCTGCGCCACGAGCTTCTTCGTCGGCCTGCTGCT-CAGCGGCCGGATGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGGCGGCGGCCGCCCAGGGCGTTCGTGGTGATCGGCATCAACACGGCGTTCAGCAGCAAGAAGCGGCGCGACTCGCTCCGGGACACGTGGGTGCCGAGGGGCGAGAGGCTGCGGCGGCTGGAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACCCCGGGCGGCGCCCTAGACCGCGCCATCGACGTGGAGGACGCCGAGACGCGGGACTTCATGCGGCTCGACCACGTCGAGGGCTACCACGAGCTCTCCTCCAAGACCCGCACCTACTTCACCGCCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACGTCCACGTCAACCTAGGGATGCTGACGAGCAGGCTGGCGAGGTACAGGACGAGGCCGAGGGTGTACGTGGGCTGCATGAAGTCCGGCCCGGTTCTGTCACAGAAGGGCGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACCGGTACTTCCGGCATGCCACCGGCCAGATCTACGCCATCTCCAAGGACCTCGCCTCCTACATCTCCATCAACCAGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGGGCGTGGCTGATAGGGCTGGAGGTGGAGCACGTGGACGACCGGAGCCTGTGCTGCGCGACGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCACTTGGTTTATATGAACCATGGAGGTGTTAGATAGTCAGACGTGGCGTCCGGTCGATCGGTAGGCGAGATCGATGCTCGGCAACTGCACTGCAAGGGGTAGTTTCAGGCGGCGATTCACTCAATCTGTGTTCTAAAATAGTACTCCCTTTGCCATAAAAAAATACATATGACCATTTTAAAACGGA-TTAGTAATTCTAATATTCTGGAAAACTTTAGTTGAGAGAAAAAGATGAAATGAGCCTCACTGATACTCCATCCGTGGGTAAGTCATCTTGTCCTTTGTAGTTTGTCTTCAAATATAAAAGACT]
[+] EMBL AK106896 [GGCCGTCGTCGTGCTCTGCGCCACGAGCTTCTTCGTCGGCCTGCTGCT CAGCGGCCGGATGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGGCGGCGGCCGCCCAGGGCGTTCGTGGTGATCGGCATCAACACGGCGTTCAGCAGCAAGAAGCGGCGCGACTCGCTCCGGGACACGTGGGTGCCGAGGGGCGAGAGGCTGCGGCGGCTGGAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACCCCGGGCGGCGCCCTAGACCGCGCCATCGACGTGGAGGACGCCGAGACGCGGGACTTCATGCGGCTCGACCACGTCGAGGGCTACCACGAGCTCTCCTCCAAGACCCGCACCTACTTCACCGCCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACGTCCACGTCAACCTAGGGATGCTGACGAGCAGGCTGGCGAGGTACAGGACGAGGCCGAGGGTGTACGTGGGCTGCATGAAGTCCGGCCCGGTTCTGTCACAGAAGGGCGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACCGGTACTTCCGGCATGCCACCGGCCAGATCTACGCCATCTCCAAGGACCTCGCCTCCTACATCTCCATCAACCAGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGGGCGTGGCTGATAGGGCTGGAGGTGGAGCACGTGGACGACCGGAGCCTGTGCTGCGCGACGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCACTTGGTTTATATGAACCATGGAGGTGTTAGATAGTCAGACGTGGCGTCCGGTCGATCGGTAGGCGAGATCGATGCTCGGCAACTGCACTGCAAGGGGTAGTTTCAGGCGGCGATTCACTCAATCTGTGTTCTAAAATAGTACTCCCTTTGCCATAAAAAAATACATATGACCATTTTAAAACGGA TTAGTAATTCTAATATTCTGGAAAACTTTAGTTGAGAGAAAAAGATGAAATGAGCCTCACTGATACTCCATCCGTGGGTAAGTCATCTTGTCCTTTGTAGTTTGTCTTCAAATATAAAAGACT]
[+] EMBL AK070830 [GGCCGTCGTCGTGCTCTGCGCCACGAGCTTCTTCGTCGGCCTGCTGCT CAGCGGCCGGATGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGGCGGCGGCCGCCCAGGGCGTTCGTGGTGATCGGCATCAACACGGCGTTCAGCAGCAAGAAGCGGCGCGACTCGCTCCGGGACACGTGGGTGCCGAGGGGCGAGAGGCTGCGGCGGCTGGAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACCCCGGGCGGCGCCCTAGACCGCGCCATCGACGTGGAGGACGCCGAGACGCGGGACTTCATGCGGCTCGACCACGTCGAGGGCTACCACGAGCTCTCCTCCAAGACCCGCACCTACTTCACCGCCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACGTCCACGTCAACCTAGGGATGCTGACGAGCAGGCTGGCGAGGTACAGGACGAGGCCGAGGGTGTACGTGGGCTGCATGAAGTCCGGCCCGGTTCTGTCACAGAAGGGCGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACCGGTACTTCCGGCATGCCACCGGCCAGATCTACGCCATCTCCAAGGACCTCGCCTCCTACATCTCCATCAACCAGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGGGCGTGGCTGATAGGGCTGGAGGTGGAGCACGTGGACGACCGGAGCCTGTGCTGCGCGACGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCA ]
[+] EMBL CB666763 [GGCCGTCGTCGTGCTCTGCGCCACGAGCTTCTTCGTCGGCCTGCTGCT CAGCGGCCGGATGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGGCGGCGGCCGCCCAGGGCGTTCGTGGTGATCGGCATCAACACGGCGTTCAGCAGCAAGAAGCGGCGCGACTCGCTCCGGGACACGTGGGTGCCGAGGGGCGAGAGGCTGCGGCGGCTGGAGGAGAAGGGGGTGGTGGTGCGGTTCNTGATCGGGCACAGCGCCACCCCGGGCGGCGCCCTAGACCGCGCCATCGACGTGGAGGACGCCGAGACGCGGGACTTCATGCGGCTCGACCACGTCGAGGGCTACCACGAGCTCTCCTCCAAGACCCGCACCTACTTCACCGCCGCCGTCGCCACCTGGGAC ]
[+] EMBL CB666806 [GGCCGTCGTCGTGCTCTGCGCCACGAGCTTCTTCGTCGGCCTGCTGCT CAGCGGCCGGATGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGGGCGCGGCGGTGCCGTCGAAGCGGGGGCGGCGGCCGCCCAGGGCGTTCGTGGTGATCGGCATCAACACGGCGTTCAGCAGCAAGAAGCGGCGCGACTCGCTCCGGGACACGTGGGTGCCGAGGGGCGAGAGGCTGCGGCGGCTGGAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACCCCGGGCGGCGCCCTAGACCGCGCCATCGACGTGGAGGACGCCGAGACTCGGGACTTCATGCGGCTCGACCACGTCGAGGGCTACCACGAGCTCTCCTCCAAGACCCGCACCTACTTCACCGCCGCCGTCGCCACCTGGGA ]
[+] EMBL AU095036 [ GAGCTTCTTCGTCGGCCTGCTGCTNCANCGGCCGGATGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGNGCGCGCGAAGCNGNACGGCGGGCTGGGCGCGGCGG ]
[-] EMBL CB666764 [ GCAGGCTGGCGAGGTACAGGACGAGGCCGAGGGTGTACGTGGGCTGCATGAAGTCCGCCCCGGTTCTGTCACAGAAGGGCGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACCGGTACTTCCGGCATGCCACCGGCCAGATNTACGCCATCTCCAAGGACCTCGCCTCCTACATCTCCATCAACCAGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGGGCGTGGCTGATAGGGCTGGAGGTGGAGCACGTGGACGACCGGAGCCTGTGCTGCGCGACGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCACTTGGTTTATATGAACCATGGAGGTGTTAGATAGTCAGACGTGGCGTCCGGTCGATCGGTAGGCGAGATCGATGCTCGGCAACTGCACTGCAAGGGGTAGTTTCAGGCGGCGATTCACTCAATCTGTGTTCTAAAATAGTACTCCCTTTGCCATAAAAAAATACATATGACCATTTTAAAACGGA TTAGgt ]
[-] EMBL CB666807 [ AGGACCTCGCCTCCTACATATCCATCAACCAGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGGGCGTGGCTGATAGGGCTGGAGGTGGAGCACGTGGACGACCGGAGCCTGTGCTGCGCGACGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCACTTGGTTTATATGAACCATGGAGGTGTTAGATAGTCAGACGTGGCGTCCGGTCGATCGGTAGGCGAGATCGATGCTCGGCAACTGCACTGCAAGGGGTAGTTTCAGGCGGCGATTCACTCAATCTGTGTTCTAAAATAGTACTCCCTTTGCCATAAAGAAATACATATGACCATTTTAAAACGGACTTAGTAAaaaaaaga ]
consensusID : consensus_13231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[CGNANNCACGGCANATNAACCNTTCAAGGACTGNCTCNAAATTTCATCAACCACCGGATATGCACNGTTTGCGAAGGAGAAGTNTCNTGGGGGCTGGNTGATAGGGNTGGAGTGGAGCANGTGGACGACNGGACCTGTGTTGCGCGAAGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCAAAAAAAA]
[+] EMBL AA753906 [CGNANNCACGGCANATNAACCNTTCAAGGACTGNCTCNAAATTTCATCAACCACCGGATATGCACNGTTTGCGAAGGAGAAGTNTCNTGGGGGCTGGNTGATAGGGNTGGAGTGGAGCANGTGGACGACNGGACCTGTGTTGCGCGAAGCCGCCGGACTGCGAGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCGCCGTCTCGAACAACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAATACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTTCCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAGAAATGGACTAATTATTCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13231#1 ------------------------------------------------------------
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 GCTGCCCGAGAGCCGTACGTACTACAGAAATACAAGTGCTAACTTAGCTTATTAGCGGAT 60
consensus_13231#1 ------------------------------------------------------------
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 AATCCCCCCAGCGAGCGAGCGAGCGAGGCTGCTGCTGCGAAATGATGACACTGTCGACGT 120
consensus_13231#1 ------------------------------------------------------------
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 CGGAGCGGCAGCCGCAGCCGGAGAAGAAGCCGCCACGGACGAGGCCGCCGCTGCCAGGCA 180
consensus_13231#1 -GGCCGTCGTCGTGCTCTGCGCCACGAGCTTCTTCGTCGGCCTGCTGCTCAGCGGCCGGA 59
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 AGGCCGTGGCCGCGCTGTGCGTGGCGAGCTTTGTCGTGGGCTTGCTGCTCAGCGGCCGGG 240
consensus_13231#1 TGACGCTTCTGATGCCACCGCCGTCGGGCAGCGTCGGCGCGGCCTCCTCCGGCCATGGCT 119
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 TGGTGGTGCCGTTGCTACCTCCG------------GGCTCGTCGTCGCCGGCGAGCAACT 288
consensus_13231#1 CCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATAAACTGGACGAGGGCAACC 179
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 ACAAGACGTCCTTCTCTACTTGCTTCGAGAACAAACGCGTTAAGTTAGGCGAGANNAATC 348
consensus_13231#1 CGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCAGTCGTTGGACAAGT 239
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 CAACGGACATCATGAACGAGGTTCCAGG--CTTACCACGGAATCCAGTCCCTGGCAAAGG 406
consensus_13231#1 CGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCGAAGCAGAACGGCGGGCTGG 299
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 CGGTTTTTTTTTTGGAGATGGAGCTCGCCGTGGAGCGCGCT---CGGAGCAGCGCCGCCG 463
consensus_13231#1 GCGCGGCGGTGCCGTCGAAGCGGGGGCGGCGGCCGCCCAGGGCGTTCGTGGTGATCGGCA 359
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 TCGGCGCCGGCACGGCCGTCTCATCCCTGGGCCCACAGAAGGCCTTCGTCGTGATCGGCA 523
consensus_13231#1 TCAACACGGCGTTCAGCAGCAAGAAGCGGCGCGACTCGCTCCGGGACACGTGGGTGCCGA 419
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 TCAACACCGCCTTCAGCAGCAAGAAGCGCCGCGACTCCCTCCGCGACACCTGGGTCCCTA 583
consensus_13231#1 GGGGCGAGAGGCTGCGGCGGCTGGAG---GAGAAGGGGGTGGTGGTGCGGTTCGTGATCG 476
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 GAGGGGATAAGCTGAGGAGGCTGGAGAAGGAGAAGGGGATCGTGATCCGGTTCGTGATCG 643
consensus_13231#1 GGCACAGCGCCACCCCGG---------GCGGCGCCCTAGACCGCGCCATCGACGTGGAGG 527
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 GGCGGAGCGGCGCGGCGGCGGCGGGCGACGGGCCGCTGGACCGCGCGGTGGACGCGGAGG 703
consensus_13231#1 ACGCCGAGACGCGGGACTTCATGCGGCTCGACCACGTCGAGGGCTACCACGAGCTCTCCT 587
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 ACGCCGAGAACAAGGACTTCCTGCGGCTGGATCACGTGGAGGGCTACCACGAGCTGTCCT 763
consensus_13231#1 CCAAGACCCGCACCTACTTCACCGCCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCA 647
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 CCAAGACCAGGGTCTACTTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCA 823
consensus_13231#1 AGGTCGACGACGACGTCCACGTCAACCTAGGGATGCTGACGAGCAGGCTGGCGAGGTACA 707
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 AGGTCGACGACGACGTCCACGTCAACCTCGGGATGCTGACGAGCAGGCTGGCCAAGTACA 883
consensus_13231#1 GGACGAGGCCGAGGGTGTACGTGGGCTGCATGAAGTCCGGCCCGGTTCTGTCACAGAAGG 767
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 GGACACGACCGAGGGTGTACGTCGGCTGCATGAAGTCCGGACCTGTTCTGTCGCAGAAGG 943
consensus_13231#1 GCGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACCGGTACTTCC 827
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 GAGTGAAGTACCACGAGCCGGAGTACTGGAAGTTCGGGGACGAGGGGAACAAGTACTTCC 1003
consensus_13231#1 GGCATGCCACCGGCCAGATCTACGCCATCTCCAAGGACCTCGCCTCCTACATCTCCATCA 887
consensus_13231#2 --CGNANNCACGGC-ANATNAAC----CNTTCAAGGACT--GNCTCNAAA--TTTCATCA 49
consensus_13231#0 GCCACGCCACCGGCCAAATCTACGCCGTTTCCAAGGATCTCGCCGCCTACATCTCCATCA 1063
* **** * ** ** * ****** * * * * * *****
consensus_13231#1 ACCAGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGGGCGTGGCTGATAG 947
consensus_13231#2 ACCACCGGATA-TGCACNG-TTTGCGAAGGAGAA-GTNTCN-TGGGGGC-TGGNTGATAG 104
consensus_13231#0 ACCAGCCGATCCTGCACAGGTTCGCAAACGAGGACGTCTCCCTCGGCGCGTGGCTGATCG 1123
**** * *** ***** * ** ** ** *** * ** ** * ** ** *** **** *
consensus_13231#1 GGCTGGAGGTGGAGCACGTGGACGACCGGAGCCTGTGCTGCGCGACGCCGCCGGACTGCG 1007
consensus_13231#2 GGNTGGAG-TGGAGCANGTGGACGACNGGA-CCTGTGTTGCGCGAAGCCGCCGGACTGCG 162
consensus_13231#0 GGCTCGAGGTCGAGCACGTCGACGACCGCAGCATGTGCTGCGCCACGCCGCCAGATTGCG 1183
** * *** * ***** ** ****** * * * **** ***** * ****** ** ****
consensus_13231#1 AGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCA 1067
consensus_13231#2 AGTGGAAGAAGCAGGCGGGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCA 222
consensus_13231#0 AGTGGAAGAAGCGAGCTGGGAACGTGTGCGTGGCGTCGTTCGATTGGTCGTGCAGTGGGG 1243
************ ** ************* ****** ***** ***** ***** **
consensus_13231#1 TCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCG 1127
consensus_13231#2 TCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAGCGCCTGCGGCGAGGGCGACGGCG 282
consensus_13231#0 TCTGCAAGTCAGTGGACAGGATGAAGCACATCCACAGGGCCTGCGGCGAAGGCCAGGGAG 1303
********** ** ********** * ********* *********** *** * ** *
consensus_13231#1 CCGTCTCGAACA--ACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAA 1185
consensus_13231#2 CCGTCTCGAACA--ACTTCGCCGCCGCCGCCGCCGCATGATCGATCGATGTGTACTGCAA 340
consensus_13231#0 CAGTCTGGAGCGTCGCTACGTGATGATCACATCATCAGCTTTAATCGTAGCATTAATCTT 1363
* **** ** * ** ** * * * ** * **** * * *
consensus_13231#1 TACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTT 1245
consensus_13231#2 TACGTACGTACACACACGCTAGCAGCTAGCCACAAGGAAGAGCAGCTATCTTACGGGGTT 400
consensus_13231#0 TGGTTTTATGATGGTGCAA-AGCAGCTAGCGGGCGACGAGGGGACTAGTTTAACTGAATG 1422
* * * * ********** ** * * * * ** * *
consensus_13231#1 CCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAG-AAATGGAC-TAAT 1303
consensus_13231#2 CCCCCCCTAATTTATCCTTGTTTTGTTTTGTGGGTCTCATAATTAG-AAATGGAC-TAAT 458
consensus_13231#0 ATCGATT--GTTTCAGATGATTAGGAAACGAGCCACGTAGAATGGATGAACGTGCATGAT 1480
* *** * ** * * * * * *** ** * * * **
consensus_13231#1 TATTCACTT--GGTTTATATGAACCATGGAGGTGTTAGATAGTCAGACGTGGCGTCCGGT 1361
consensus_13231#2 TATTCAAAA--AAAA--------------------------------------------- 471
consensus_13231#0 GGTGGAAAATGGAAATGCATGGGTGGTAACTGTAAAAGTGTAAAGGCTTTAGCATCCAAT 1540
* *
consensus_13231#1 CGATCGGTAGGCGAGATCGATGCTCGGCAACTGCACTGCAAGGGGTAGTTTCAGGCGGCG 1421
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 TTCCAGGGGGAGTTGGGTCATGCCATATGCTTCACTTATTAATCACAGCTCTTTCTGCAT 1600
consensus_13231#1 ATTCACTCAATCTGTGTTCTAAAATAGTACTCCCTTTGCCATAAAAAAATACATATGACC 1481
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 TTTTAAGGGCTCCTTCAGAACGCAAGTTTTTTTTTATGATTAGTTGAATTCTTATAGTCA 1660
consensus_13231#1 ATTTTAAAACGGATTAGTAATTCTAATATTCTGGAAAACTTTAGTTGAGAGAAAAAGATG 1541
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 CCCTTTATATAGTTCGTTTACCTTTCAAAAAGTGCAGCCGTGAGATGTAATTTCTACTCT 1720
consensus_13231#1 AAATGAGCCTCACTGATACTCCATCCGTGGGTAAGTCATCTTGTCCTTTGTAGTTTGTCT 1601
consensus_13231#2 ------------------------------------------------------------
consensus_13231#0 CAAACTAAAAAAAGGCTGAAGGATGCAGAAGGAACTTT---------------------- 1758
consensus_13231#1 TCAAATATAAAAGACT 1617
consensus_13231#2 ----------------
consensus_13231#0 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||