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Oryza sativa
cluster # 13245 cluster # 13245       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13245#0 length = 1642 sequences # 11  
consensus_13245#1 length = 227 sequences # 1  

consensusID : consensus_13245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1642
fasta sequence
                              [AGCTGTTTCAACGACGGCTGCTCGGAATTCGGAGGGAGGGAGGAAGGAATCGGAGTGTTCGGTAAGCTTCGCGAAGCGGGATGGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGGTGGCCCTCGTCGTCTCGCCGCCGGCGGTCGCCGCGGCGGCGAGCCGAATGCGGATCGAGCCCCTCCCCACCGCCGCGCTGCGCCGCCTCTACGACACCTCCAACTACGGCAAGCTGCAGCTCAACAACGGCCTCGCCCTCACCCCGCAGATGGGATGGAACAGCTGGAATTTCTTCGCCTGCAACATCAACGAGACGGTCATCCGCGACACAGCTGACGCACTAGTCTCGACGGGGCTGGCTGATTTGGGCTACAACTATGTAAATATCGATGATT-GTTGGTCCAATGTAAAAAGAGGAAAAAAGGATCAATTGCTACCTGACCCAAAAACTTTCCCTTCTGGCATCAAAGATCTTGCGGACTATGTGCATGGGAAAGGTCTAAAGCTTGGTATCTACTCTGATGCTGGGATTTTTACATGTCAAGTTCGACCTGGATCGCTCCATCATGAAAAGGACGATGCTGCAATATTTGCTTCATGGGGTGTTGATTACCTGAAGTATGACAACTGCTACAATTTGGGAATAAAGCCCAAGGACAGGTATCCTCCAATGCGTGATGCTTTAAATTCAACTGGACGCCAAATATTCTACTCTCTATGTGAATGGGGCCAGGATGATCCAGCCTTATGGGCTGGCAAAGTTGGTAACAGTTGGCGCACAACAGATGACATACAGGATACATGGAAAAGCATGACTGATATTGCTGATAAGAATAACAAGTGGGCATCATATGCTGGACCCGGTGGATGGAATGACCCGGATATGCTGGAAGTCGGGAATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGGCCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGAGCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAATAATTTATTCTCTCCCAAAAGGGAAAAAAAAAAAAAAA]

[+] EMBL AK065079             [AGCTGTTTCAACGACGGCTGCTCGGAATTCGGAGGGAGGGAGGAAGGAATCGGAGTGTTCGGTAAGCTTCGCGAAGCGGGATGGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGGTGGCCCTCGTCGTCTCGCCGCCGGCGGTCGCCGCGGCGGCGAGCCGAATGCGGATCGAGCCCCTCCCCACCGCCGCGCTGCGCCGCCTCTACGACACCTCCAACTACGGCAAGCTGCAGCTCAACAACGGCCTCGCCCTCACCCCGCAGATGGGATGGAACAGCTGGAATTTCTTCGCCTGCAACATCAACGAGACGGTCATCCGCGACACAGCTGACGCACTAGTCTCGACGGGGCTGGCTGATTTGGGCTACAACTATGTAAATATCGATGATT GTTGGTCCAATGTAAAAAGAGGAAAAAAGGATCAATTGCTACCTGACCCAAAAACTTTCCCTTCTGGCATCAAAGATCTTGCGGACTATGTGCATGGGAAAGGTCTAAAGCTTGGTATCTACTCTGATGCTGGGATTTTTACATGTCAAGTTCGACCTGGATCGCTCCATCATGAAAAGGACGATGCTGCAATATTTGCTTCATGGGGTGTTGATTACCTGAAGTATGACAACTGCTACAATTTGGGAATAAAGCCCAAGGACAGGTATCCTCCAATGCGTGATGCTTTAAATTCAACTGGACGCCAAATATTCTACTCTCTATGTGAATGGGGCCAGGATGATCCAGCCTTATGGGCTGGCAAAGTTGGTAACAGTTGGCGCACAACAGATGACATACAGGATACATGGAAAAGCATGACTGATATTGCTGATAAGAATAACAAGTGGGCATCATATGCTGGACCCGGTGGATGGAATGACCCGGATATGCTGGAAGTCGGGAATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGGCCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGAGCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATAAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAATAATT                                 ]
[+] EMBL AK099229             [AGCTGTTTCAACGACGGCTGCTCGGAATTCGGAGGGAGGGAGGAAGGAATCGGAGTGTTCGGTAAGCTTCGCGAAGCGGGATGGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGGTGGCCCTCGTCGTCTCGCCGCCGGCGGTCGCCGCGGCGGCGAGCCGAATGCGGATCGAGCCCCTCCCCACCGCCGCGCTGCGCCGCCTCTACGACACCTCCAACTACGGCAAGCTGCAGCTCAACAACGGCCTCGCCCTCACCCCGCAGATGGGATGGAACAGCTGGAATTTCTTCGCCTGCAACATCAACGAGACGGTCATCCGCGACACAGCTGACGCACTAGTCTCGACGGGGCTGGCTGATTTGGGCTACAACTATGTAAATATCGATGATT GTTGGTCCAATGTAAAAAGAGGAAAAAAGGATCAATTGCTACCTGACCCAAAAACTTTCCCTTCTGGCATCAAAGATCTTGCGGACTATGTGCATGGGAAAGGTCTAAAGCTTGGTATCTACTCTGATGCTGGGATTTTTACATGTCAAGTTCGACCTGGATCGCTCCATCATGAAAAGGACGATGCTGCAATATTTGCTTCATGGGGTGTTGATTACCTGAAGTATGACAACTGCTACAATTTGGGAATAAAGCCCAAGGACAGGTATCCTCCAATGCGTGATGCTTTAAATTCAACTGGACGCCAAATATTCTACTCTCTATGTGAATGGGGCCAGGATGATCCAGCCTTATGGGCTGGCAAAGTTGGTAACAGTTGGCGCACAACAGATGACATACAGGATACATGGAAAAGCATGACTGATATTGCTGATAAGAATAACAAGTGGGCATCATATGCTGGACCCGGTGGATGGAATGACCCGGATATGCTGGAAGTCGGGAATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGGCCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGAGCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAATAATT                                 ]
[+] EMBL CB643433             [                       GGAATTCGGAGGGAGGGAGGAAGGAATCGGAGTGTTCGGTAAGCTTCGCGAAGCGGGATGGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGGTGGCCCTCGTCGTCTCGCCGCCGGCGGTCGCCGCGGCGGCGAGCCGAATGCGGATCGAGCCCCTCCCCACCGCCGCGCTGCGCCGCCTCTACGACACCTCCAACTACGGCAAGCTGCAGCTCAACAACGGCCTCGCCCTCACCCCGCAGATGGGATGGAACAGCTGGAATTTCTTCGCCTGCAACATCAACGAGACGGTCATCCGCGACACAGCTGACGCACTAGTCTCGACGGGGCTGGCTGATTTGGGCTACAACTATGTAAATATCGATGATT GTTGGTCCAATGTAAAAAGAGGAAAAAAGGATCAATTGCTACCTGACCCAAAAACTTTCCCTTCTGGCATCAAAGATCTTGCGGACTATGTGCATGGGAAAGGTCTAAAGCTTGGTATCTACTCTGATGCTGGGATTTTTACATGTCAAGTTCGACCTGGATCGCTCCATCATGAAAAGGACGATGCTGCAATATTTGCTTCATGGGGTGTTGATTACCTGAAGTATGACAACTGCTACAATTTGGGAATAAAGCCCAAGGACAGGTATCCTCCAATGCGTGATGCTTTAAATTCAACTGGACGCCAAATATTCTACTCTCTATGTGAATGGGGCCAGGATGATCCAGCCTTATGGGCTGGCAAAGTTGGTAACAGTTGGCGCACAACAGATGACATACAGGATACATGGAAAAGCATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C28890               [                                                                                tgaGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGGTGGCCCTCGTCGTNTCGCCGCCGG GGTCGCCGCGG GGCGGGCCGAATGCGGATCGANCCCCTCCCCACCGCCGCGCTTCGCCGCCNNTACGACACCTCCAACTACGGCAAGCTGCAGCTCAACAACGGCCTCGCCCTCACCCCGCAGATGGNATGGAACAGCTGGAATTTTTTCGCCTGCAACATCAACGAGACGGTCATCCGCNACACAGCTGACGCACTAGTNTCGACGGGGCTGGCTGATTTGGGCTACAACTATGTAAATATCGATGATTNTTTGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB643434             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GATATTGCTGATAAGAATAACAAGTGGGCATCATATGCTGGACCCGGTGGATGGAATGACCCGGATATGCTGGAAGTCGGGAATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGGCCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGAGCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAATAATTT                                ]
[-] EMBL CB685779             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACCCGGATATGCTGGAAGTCGGGAATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGGCCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGAGCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAACCAACCCACGTAAGGTTTTTCTTGCAAGCTCGTGGTGTAAATTTATTGGTGGCTTGACGCCGTAGGGTGTCCAGGATGCAAATCAATAATTTATTCTCTCCCAAAAGGGAA             ]
[+] EMBL CA758723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGAGCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTNTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTG                                                                         ]
[+] EMBL AU057220             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGTTCAAGGAAGAAGAATTTTAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCA                                                                                                                             ]
[-] EMBL BI306408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTCTGGCTGTTGTTTTATGGAATCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTATAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAAa                                     ]
[-] EMBL CB965624             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGATGCCTAGAGGTGTGGTCTGGCCCCCTCTCTGGTATCCGTCTGGCTGTTGTTTTATGGAATCTCTGTGAGGAGTCTGCCTATATTATAGTAAAATTGCCATCTATAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGT                                                      ]
[+] EMBL AU057221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAATAATTTATTCTGTCCAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13245#0 AGCTGTTTCAACGACGGCTGCTCGGAATTCGGAGGGAGGGAGGAAGGAATCGGAGTGTTC GGTAAGCTTCGCGAAGCGGGATGGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGG TGGCCCTCGTCGTCTCGCCGCCGGCGGTCGCCGCGGCGGCGAGCCGAATGCGGATCGAGC CCCTCCCCACCGCCGCGCTGCGCCGCCTCTACGACACCTCCAACTACGGCAAGCTGCAGC TCAACAACGGCCTCGCCCTCACCCCGCAGATGGGATGGAACAGCTGGAATTTCTTCGCCT GCAACATCAACGAGACGGTCATCCGCGACACAGCTGACGCACTAGTCTCGACGGGGCTGG CTGATTTGGGCTACAACTATGTAAATATCGATGATTGTTGGTCCAATGTAAAAAGAGGAA AAAAGGATCAATTGCTACCTGACCCAAAAACTTTCCCTTCTGGCATCAAAGATCTTGCGG ACTATGTGCATGGGAAAGGTCTAAAGCTTGGTATCTACTCTGATGCTGGGATTTTTACAT GTCAAGTTCGACCTGGATCGCTCCATCATGAAAAGGACGATGCTGCAATATTTGCTTCAT GGGGTGTTGATTACCTGAAGTATGACAACTGCTACAATTTGGGAATAAAGCCCAAGGACA GGTATCCTCCAATGCGTGATGCTTTAAATTCAACTGGACGCCAAATATTCTACTCTCTAT GTGAATGGGGCCAGGATGATCCAGCCTTATGGGCTGGCAAAGTTGGTAACAGTTGGCGCA CAACAGATGACATACAGGATACATGGAAAAGCATGACTGATATTGCTGATAAGAATAACA AGTGGGCATCATATGCTGGACCCGGTGGATGGAATGACCCGGATATGCTGGAAGTCGGGA ATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGG CCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGA GCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTT TAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTC TGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCAT CTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTC TATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGT ATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGA TGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTT TGGTCGAGGCAACAGGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCT ATGGGGAAGTTCGTGCAAGCAAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAAT TTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAATAATTTATTCTCTCCC AAAAGGGAAAAAAAAAAAAAAA



consensusID : consensus_13245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence
                              [CTCGATGGAATGCGTGCCACCATTTGTGGTCGAGGCAACACGGTCTACCTGAAATGTTGCTCTTAGTGGAGAATGCAGTGTGTTGCCCGTGTTCTATAGGGGAAGTTCGTGCACAGCCAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACCCCGTTTGCTGTACAGGATGCAAATAAATAATTTATTCTGTCCCAAAAAAAAAA]

[+] EMBL BM420679             [CTCGATGGAATGCGTGCCACCATTTGTGGTCGAGGCAACACGGTCTACCTGAAATGTTGCTCTTAGTGGAGAATGCAGTGTGTTGCCCGTGTTCTATAGGGGAAGTTCGTGCACAGCCAACCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACCCCGTTTGCTGTACAGGATGCAAATAAATAATTTATTCTGTCCCAAAAAAAAAA]


>consensus_13245#1 CTCGATGGAATGCGTGCCACCATTTGTGGTCGAGGCAACACGGTCTACCTGAAATGTTGC TCTTAGTGGAGAATGCAGTGTGTTGCCCGTGTTCTATAGGGGAAGTTCGTGCACAGCCAA CCACGTAAGGTTTTTCTTGCAAGCTTGTGGTGTAAATTTATTGGTGGCTTGACCCCGTTT GCTGTACAGGATGCAAATAAATAATTTATTCTGTCCCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13245#0      AGCTGTTTCAACGACGGCTGCTCGGAATTCGGAGGGAGGGAGGAAGGAATCGGAGTGTTC 60
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GGTAAGCTTCGCGAAGCGGGATGGAGGCGCCGCGCCTCCGCCTCCCGTTCCTCCTACTGG 120
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      TGGCCCTCGTCGTCTCGCCGCCGGCGGTCGCCGCGGCGGCGAGCCGAATGCGGATCGAGC 180
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      CCCTCCCCACCGCCGCGCTGCGCCGCCTCTACGACACCTCCAACTACGGCAAGCTGCAGC 240
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      TCAACAACGGCCTCGCCCTCACCCCGCAGATGGGATGGAACAGCTGGAATTTCTTCGCCT 300
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GCAACATCAACGAGACGGTCATCCGCGACACAGCTGACGCACTAGTCTCGACGGGGCTGG 360
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      CTGATTTGGGCTACAACTATGTAAATATCGATGATTGTTGGTCCAATGTAAAAAGAGGAA 420
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      AAAAGGATCAATTGCTACCTGACCCAAAAACTTTCCCTTCTGGCATCAAAGATCTTGCGG 480
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      ACTATGTGCATGGGAAAGGTCTAAAGCTTGGTATCTACTCTGATGCTGGGATTTTTACAT 540
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GTCAAGTTCGACCTGGATCGCTCCATCATGAAAAGGACGATGCTGCAATATTTGCTTCAT 600
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GGGGTGTTGATTACCTGAAGTATGACAACTGCTACAATTTGGGAATAAAGCCCAAGGACA 660
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GGTATCCTCCAATGCGTGATGCTTTAAATTCAACTGGACGCCAAATATTCTACTCTCTAT 720
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GTGAATGGGGCCAGGATGATCCAGCCTTATGGGCTGGCAAAGTTGGTAACAGTTGGCGCA 780
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      CAACAGATGACATACAGGATACATGGAAAAGCATGACTGATATTGCTGATAAGAATAACA 840
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      AGTGGGCATCATATGCTGGACCCGGTGGATGGAATGACCCGGATATGCTGGAAGTCGGGA 900
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      ATGGTGGCATGACCTTTGCAGAGTATCGTGCACATTTTAGCATCTGGGCACTTATGAAGG 960
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      CCCCTCTCTTAATTGGTTGCGATGTCAGAAACATGACTAAAGAAACAATGGAAATATTGA 1020
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      GCAACAAAGAAGTAATTCAAGTAAATCAAGATCCTCTTGGAGTTCAAGGAAGAAGAATTT 1080
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      TAGGTCAAGGGAAAAATGGATGCCAAGAGGTGTGGGCTGGCCCCCTCTCTGGTAACCGTC 1140
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      TGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCAT 1200
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      CTGTAGGCCTTGATGGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTC 1260
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      TATCAGAGAACGTTGTTGGAACTTTTGGGGCGCAAGTTGACGTGCATGACTGCAAAATGT 1320
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      ATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCATGCCTGA 1380
consensus_13245#1      ------------------------------------------------------------
                                                                                   

consensus_13245#0      TGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGT---CCACCA 1437
consensus_13245#1      --------------------------------------CTCGATGGAATGCGTGCCACCA 22
                                                             *  **** *  *    ******

consensus_13245#0      TTT-TGGTCGAGGCAACA-GGTCTAC-TGAAAT-TTGCTTT--GTGGAGAATGCAGT--- 1488
consensus_13245#1      TTTGTGGTCGAGGCAACACGGTCTACCTGAAATGTTGCTCTTAGTGGAGAATGCAGTGTG 82
                       *** ************** ******* ****** ***** *  **************   

consensus_13245#0      TTTCCCGT-TTCTAT-GGGGAAGTTCGTGCA-AGCAAACCACGTAAGGTTTTTCTTGCAA 1545
consensus_13245#1      TTGCCCGTGTTCTATAGGGGAAGTTCGTGCACAGCCAACCACGTAAGGTTTTTCTTGCAA 142
                       ** ***** ****** *************** *** ************************

consensus_13245#0      GCTTGTGGTGTAAATTTATTGGTGGCTTGACGCCGTTTGCTGTACAGGATGCAAATAAAT 1605
consensus_13245#1      GCTTGTGGTGTAAATTTATTGGTGGCTTGACCCCGTTTGCTGTACAGGATGCAAATAAAT 202
                       ******************************* ****************************

consensus_13245#0      AATTTATTCTCTCCCAAAAGGGAAAAAAAAAAAAAAA 1642
consensus_13245#1      AATTTATTCTGTCCCAAAAAAAAAA------------ 227
                       ********** ********   ***            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)