These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1763 fasta sequence [ATCTTCCTCCATCTGCGTATTTTCCAACACATCTCTCTTGCAGTTCGTTTCAAGTCTTTCATTAAGTAAAACTTTCTGAACATTTGAAGTGCAACGGAGCTGGCGTTTTATGGCTTTTCCTATGAAGCAATCCACATCTCTGATATAGATGTGTACTCGTTCTGAACATGACAAGTTCTCAGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCCTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAAT-GGATTTGAGCAATAGCTCACCTGTCATCACCGATCCGGT-GGCGATCAGCCAGCAGTTGTTGGGCGGCCTGCCTTCAAATCTGATGCAGTTTTCAGTCATGCCCGGTGGCTACTCCAGCTCTGGCATGAACGTTGGTGTCAGTAGGCTCAAAATCGAGGAAGTCCTTGTCAATGGACTGCTTGATGCCATGAAATCCTCGTCACCTCGCAGGAGGCTGAATGTAGCATTTGGCGAGGACAATTCATCTGAAGAAGAAGACCCTGCTTACAGCGCTTGGATGGCAAAATGTCCTTCTGCTTTGGCTTCCTTCAAGCAAATTGTAGCCAGTGCACAAGGGAAGAAGATTGCTGTGTTTCTAGACTATGACGGCACACTGTCGCCTATTGTGGATGATCCTGACAAAGCAGTGATGTCTCCCGTGATGAGAGCTGCTGTGAGAAATGTTGCGAAGTACTTCCCCACTGCAATTGTCAGCGGAAGGTCCCGCAATAAGGTGTTTGAATTTGTAAAACTGAAGGAGCTTTATTATGCTGGAAGCCATGGTATGGACATAATGGCACCTTCAGCAAATCATGAGCACAGTGCTGAAAAGAGCAAACAGGCCAATCTCTTCCAACCTGCACACGACTTTCTGCCAATGATCGATGAGGTTACCAAGTCCCTCTTGCAAGTTGTCAGTGGAATTGAAGGTGCAACTGTTGAGAACAACAAATTCTGCGTTTCTGTACATTATCGCAACGTTGCAGAGAAGGATTGGAAACTGGTCGCACGGCTCGTAAACGAAGTGCTGGAGGCTTTTCCTCGTCTCAAAGTAACCAATGGACGAATGGTTTTAGAGGTTCGTCCGGTGATCGACTGGGACAAGGGAAAGGCTGTGGAGTTTCTGCTCCAGTCACTCGGGCTAAATGACTCTGAAAATGTGATCCCCATCTACATTGGAGACGACAGAACTGACGAAGACGCTTTCAAGGTACTTCGACAGCGAAATTGCGGTTATGGAATACTAGTTTCACAGGTTCCCAAGGAAACTGAAGCCTTCTACTCGCTGAGAGATCCATCTGAAGTGATGGAGTTCCTCAA-TTTCTTGGTGAGATGGAAGAAGCACTCAGTGTGAAAAAAAGAAGA-CAGTCTGAGCAGGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTC--ATGTTCTCCACCGCTGAGAAAAATTAATCAGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTGTAAGCAAGAAGGCCCTCTTCTTAGTATCCATGCTGATGAACGAAATTAAAACCTTCAAAAAAAAAAAAAA] [+] EMBL AK103391 [ATCTTCCTCCATCTGCGTATTTTCCAACACATCTCTCTTGCAGTTCGTTTCAAGTCTTTCATTAAGTAAAACTTTCTGAACATTTGAAGTGCAACGGAGCTGGCGTTTTATGGCTTTTCCTATGAGGCAATCCACATCTCTGATATAGATGTGTACTCGTTCTGAACATGACAAGTTCTCAGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCGTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAAT GGATTTGAGCAATAGCTCACCTGTCATCACCGATCCGGT GGCGATCAGCCAGCAGTTGTTGGGCGGCCTGCCTTCAAATCTGATGCAGTTTTCAGTCATGCCCGGTGGCTACTCCAGCTCTGGCATGAACGTTGGTGTCAGTAGGCTCAAAATCGAGGAAGTCCTTGTCAATGGACTGCTTGATGCCATGAAATCCTCGTCACCTCGCAGGAGGCTGAATGTAGCATTTGGCGAGGACAATTCATCTGAAGAAGAAGACCCTGCTTACAGCGCTTGGATGGCAAAATGTCCTTCTGCTTTGGCTTCCTTCAAGCAAATTGTAGCCAGTGCACAAGGGAAGAAGATTGCTGTGTTTCTAGACTATGACGGCACACTGTCGCCTATTGTGGATGATCCTGACAAAGCAGTGATGTCTCCCGTGATGAGAGCTGCTGTGAGAAATGTTGCGAAGTACTTCCCCACTGCAATTGTCAGCGGAAGGTCCCGCAATAAGGTGTTTGAATTTGTAAAACTGAAGGAGCTTTATTATGCTGGAAGCCATGGTATGGACATAATGGCACCTTCAGCAAATCATGAGCACAGTGCTGAAAAGAGCAAACAGGCCAATCTCTTCCAACCTGCACACGACTTTCTGCCAATGATCGATGAGGTTACCAAGTCCCTCTTGCAAGTTGTCAGTGGAATTGAAGGTGCAACTGTTGAGAACAACAAATTCTGCGTTTCTGTACATTATCGCAACGTTGCAGAGAAGGATTGGAAACTGGTCGCACGGCTCGTAAACGAAGTGCTGGAGGCTTTTCCTCGTCTCAAAGTAACCAATGGACGAATGGTTTTAGAGGTTCGTCCGGTGATCGACTGGGACAAGGGAAAGGCTGTGGAGTTTCTGCTCCAGTCACTCGGGCTAAATGACTCTGAAAATGTGATCCCCATCTACATTGGAGACGACAGAACTGACGAAGACGCTTTCAAGGTACTTCGACAGCGAAATTGCGGTTATGGAATACTAGTTTCACAGGTTCCCAAGGAAACTGAAGCCTTCTACTCGCTGAGAGATCCATCTGAAGTGATGGAGTTCCTCAA TTTCTTGGTGAGATGGAAGAAGCACTCAGTGTGAAAAAAAGAAGA CAGTCTGAGCAGGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTC ATGTTCTCCACCGCTGAGAAAAATTAATCAGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTGTAAGCAAGAAGGCCCTCTTCTTAGTATCCATGCTGATGAACGAAATTAAAACCTTCA ] [+] EMBL CF324118 [ TTCCTCCATCTGCGTATTTTCCAACACATCTCTCTTGCAGTTCGTTTCAAGTCTTTCATTAAGTAAAACTTTCTGAACATTTGAAGTGCAACGGAGCTGGCGTTTTATGGCTTTTCCTATGAAGCAATCCACATCTCTGATATAGATGTGTACTCGTTCTGAACATGACAAGTTCTCAGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCCTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAAT GGATTTGAGCAATAGCTCACC ] [+] EMBL CF307400 [ TCCTCCATCTGCGTATTTTCC ACACATCTCTCTTGCAGTTCGTTTCAAGTCTTTCATTAAGTAAAACTTTCTGAACATTTGAAGTGCAACGGAGCTGGCGTTTTATGGCTTTTCCTATGAAGCAATCCACATCTCTGATATAGATGTGTACTCGTTCTGAACATGACAAGTTCTCAGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCCTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAAT GGATTTGAGCAATAGCTCACCTGTCATCACCGATCCGGT GGCGATCAGCCAGCAGTTGTTGGGCGGCCTGCCTTCAAATCTGATGCAGTTTTCAGTCATGCCCGGTGGCTACTCCAGCTCTGGCATGAACGTTGGTGTCAGTAGGCTCAAAATCGAGGAAGTCCTTGTCAATGGACTGCTTGATGCCATGAAATCCTCGTCACCTCGCAGGAGGCTGAATGTAG ] [+] EMBL CF305564 [ TCCTCCATCTGCGTATTTTCC ACACATCTCTCTTGCAGTTCGTTTCAAGTCTTTCATTAAGTAAAACTTTCTGAACATTTGAAGTGCAACGGAGCTGGCGTTTTATGGCTTTTCCTATGAAGCAATCCACATCTCTGATATAGATGTGTACTCGTTCTGAACATGACAAGTTCTCAGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCCTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAAT GGATTTGAGCAATAGCTCACCTGTCATCACCGATCCGGT GGCGATCAGCCAGCAGTTGTTGGGCG ] [+] EMBL OSC104071 [ CGTATTTTCCAACACATCTCTCTTGCAGTTCGTTTCAAGTCTTTCATTAAGTAAAACTTTCTGAACATTTGAAGTGCAACGNAGCTGGCGTTTTATGGCTTTTCCTATGAAGCAATCCACATCTCTGATATAGATGTGTACTCGTTCTGAACATGACA AGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCCTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAATGGGATTTGAGCAATAGCTCACCTGTCATCACCGATCCGGTGGGCGATCAGCC ] [+] EMBL CF323582 [ TCAGGTATTTCTCTGTTGATGAACTGCCTCCACACCTGCAGTGACAAGAAGACACTGAAGAAGTGGTTTTTCATCGACAAGACAGTTGGCTAAATTCAGCAGTGCACTCGTCCTTAAAGCGATCGATCATACTTCTTTCTTGATCTCATCATCCTAAATTTTCCCAAAT GGATTTGAGCAATAGCTCACCTGTCATCACCGATCCGGT GGCGATCAGCCAGCAGTTGTTGGGCGGCCTGCCTTCAAATCTGATGCAGTTTTCAGTCATGCCCGGTGGCTACTCCAGCTCTGGCATGAACGTTGGTGTCAGTAGGCTCAAAATCGAGGAAGTCCTTGTCAATGGACTGCTTGATGCCATGAAATCCT ] [+] EMBL AK059390 [ AGTTTTCAGTCATGCCCGGTGGCTACTCCAGCTCTGGCATGAACGTTGGTGTCAGTAGGCTCAAAATCGAGGAAGTCCTTGTCAATGGACTGCTTGATGCCATGAAATCCTCGTCACCTCGCAGGAGGCTGAATGTAGCATTTGGCGAGGACAATTCATCTGAAGAAGAAGACCCTGCTTACAGCGCTTGGATGGCAAAATGTCCTTCTGCTTTGGCTTCCTTCAAGCAAATTGTAGCCAGTGCACAAGGGAAGAAGATTGCTGTGTTTCTAGACTATGACGGCACACTGTCGCCTATTGTGGATGATCCTGACAAAGCAGTGATGTCTCCCGTGATGAGAGCTGCTGTGAGAAATGTTGCGAAGTACTTCCCCACTGCAATTGTCAGCGGAAGGTCCCGCAATAAGGTGTTTGAATTTGTAAAACTGAAGGAGCTTTATTATGCTGGAAGCCATGGTATGGACATAATGGCACCTTCAGCAAATCATGAGCACAGTGCTGAAAAGAGCAAACAGGCCAATCTCTTCCAACCTGCACACGACTTTCTGCCAATGATCGATGAGGTTACCAAGTCCCTCTTGCAAGTTGTCAGTGGAATTGAAGGTGCAACTGTTGAGAACAACAAATTCTGCGTTTCTGTACATTATCGCAACGTTGCAGAGAAGGATTGGAAACTGGTCGCACGGCTCGTAAACGAAGTGCTGGAGGCTTTTCCTCGTCTCAAAGTAACCAATGGACGAATGGTTTTAGAGGTTCGTCCGGTGATCGACTGGGACAAGGGAAAGGCTGTGGAGTTTCTGCTCCAGTCACTCGGGCTAAATGACTCTGAAAATGTGATCCCCATCTACATTGGAGACGACAGAACTGACGAAGACGCTTTCAAGGTACTTCGACAGCGAAATTGCGGTTATGGAATACTAGTTTCACAGGTTCCCAAGGAAACTGAAGCCTTCTACTCGCTGAGAGATCCATCTGAAGTGATGGAGTTCCTCAA TTTCTTGGTGAGATGGAAGAAGCACTCAGTGTGAAAAAAAGAAGA CAGTCTGAGCAGGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTC ATGTTCTCCACCGCTGAGAAAAATTAATCAGTGATGGTTGATCCGGTCTCTTGCCATTATAAGTTGTAAGCAAGAAGGCCCTCTTCTTAGTATCCATGCTGATGAACGAAATTAAAACCTTCA ] [+] EMBL AU166371 [ CATGCCCGGTGGCTACTCCAGCTCTGGCATGAACGTTGGTGTCAGTAGGCTCAAAATCGAGGAAGTCCTTGTCAATGGACTGCTTGATGCCATGAAATCCTCGTCACCTCGCAGGAGGCTGAATGTAGCATTTGGCGAGGACAATTCATCTGAAGAAGAAGACCCTGCTTACAGCGCTTGGATGGCAAAATGTCCTTCTGCTTTGGCTTCCTTCAAGCAAATTGTAGCCAGTGCACAAGGGAAGAAGATTGCTGTGTTTCTAGACTATGACGGCACACTGTCGCCTATTGTGGATGATCCTGACAAAGCAGTGATGTCTCCCGTGATGAGAGCTGCTGTGAGAAATGTTGCGAAGTACTTCCCCACTGCAATTGTCAGCGGAAGGTCCCGCAATAAGGTGTTTGAATTTGTAAAACTGAAGGAGCTTTAT ] [+] EMBL CB096926 [ GGAGTTTCTGCTCCAGTCACTCGGGCTAAATGACTCTGAAAATGTGATCCCCATCTACATTGGAGACGACAGAACTGACGAAGACGCTTTCAAGGTACTTCGACAGCGAAATTGCGGTTATGGAATACTAGTTTCACAGGTTCCCAAGGAAACTGAAGCCTTCTACTCGCTGAGAGATCCATCTGAAGTGATGGAGTTCCTCAA TTTCTTGGTGAGACGGAAGAAGCACTCAGTGTGAAAAAAAGAAGA CAGTCAGAGCAGGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTCATATGTTCTCCACCGCTGAGAAAAATTAATCAGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTGTAAGCAAGAAGACCCTCTTCTTAGTATCCATGCTGATGAACGAAATTAAAACCTTCAtttttcg ] [+] EMBL OS1200A [ TGTGATCCCCATCTACATTGGAGACGACAGAACTGACGAAGACGCTTTCAAGGTACTTCGACAGCGAAATTGCGGTTATGGAATACTAGTTTCACAGGTTCCCAAGGAAACTGAAGCCTTCTACTCGCTGAGAGATCCATCTGAAGTGATGGAGTTCCTCAA TTTCTTGGTGAGATGGAAGAAGCACTCAGTGTGAAAAAAAGAAGA CAGTCTGAGCAGGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATNGTTC ATGTTCTCCACCGNTGAGAAAAATTNATCAGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTGTAAGCAAGNGGGGCCTNTT TTAGNATCCATGCTGATGGANGGAATT NAACCTTa ] [+] EMBL AU166372 [ CGACAGCGAAATTGCGGTTATGGAATACTAGTTTCACAGGTTCCCAAGGAAACTGAAGCCTTCTACTCGCTGAGAGATCCATCTGAAGTGATGGAGTTCCTCAA TTTCTTGGTGAGATGGAAGAAGCACTCAGTGTGAAAAAAAGAAGA CAGTCTGAGCAGGTTTTACTAATACTACTCCGGCAGAAATAACTGTAGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATGTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTC ATGTTCTCCNCCGCTGAGAAAAATTAATCAGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTGTAAGCAAGAAGGCCCTCTTCTTAGTATCCATGCTGATGAACGAAATTAAAACCTTCAAAAAAAA ] [+] EMBL C96636 [ tttcCCCCAATTTTCTTGGTGAGATGGAAGAAGCACCCCGTGTGAAAAAAGGAAGACCAGTCTGAGCNGGTTTTACTNATACTACTCCGGCNGAAATAACTGTNGTTTCCGAGGCGACAATTTTGAAGCATTGGACGCTGTAGATAGATNTAATAACTCTCTAGATATGTGGTTCCAATTCATTCTTATTGATCGATGTTATTGTATTGTTC ATGTTCTCCACCGCTGAGAAAAATTAATCNGTGATGGTTGATCCGGTCTCTTGCCATTGTAAGTTNTAAGCAAGAAGGCCCTCTTCTTNGTATCCATGCTGATGAACGAAATTAAAACCTTCAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||