These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 748 fasta sequence [GTCCATCTCTCCTCTCCTCGCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC-TCAAACCCGCCCCTT-CCCCGCTCGCTGCCT-CCT-TTCT--CCGGCCCGTCT-CT-CG-CTT-CTCCAGGTT-CCAGTCCGTCAAGACCAAGGCCACA-GAA-AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA-AGGAAACGGTGCAATAGTGTGCAACCAGTG-CAAGGGAGATGGGGTGAATTC-TGTCGATCACTTCAACGGCCGA-TTTAAAGCTGGAGCATTATGCTGGC-TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA-ATGGTGCT-GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA-ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAACATGGGAAGTTGGGAACCCAGCCACAATT] [+] EMBL AK060439 [GTCCATCTCTCCTCTCCTCGCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAACATGGGAAGTTGGGAACCCAGCCACAATT] [+] EMBL OSS14439A [ GCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGATCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAA CAGTG CAAGGGAGATGGGGTGAATTCTTGTCGATCACTTCAACGGCCGATTTTAAAGCTGGAGCATTATGCTGGCTTTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAG TGCA ATGGTGCTGGGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCA ] [+] EMBL AU096612 [ CTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAG NTCAACGCGACCGCCGCNTCCCCTCCGCTCTTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGATCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCAAAAa ] [+] EMBL CB681832 [ CGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATG ] [+] EMBL OSR25321A [ CGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGATCCTCC TCAAACCCGCCCCTT CCCCGNTCGNTGCCT ACT TTTT CCGGCCCGTCT AT AG CTT CTCCAGGTT CCAGTCCNTCAAGACCAAGGNCACA GAA AATGATCAGACCGAAAAGAGT ] [+] EMBL AT003530 [ CGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAG CCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTaaaaaaa ] [+] EMBL BI805575 [ CCTCCGTCAAACCCGCCCCTTGCCCCGCTCGCTGCCT CCTGTTCT CCGGCCCGTCT CT CGTCTTCCTCCAGGTT CCAGTCCGTCAAGACCAGGCCCACAGGAAGAATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGAGAGGAAACGGTGC ATAGTGTGCAACCAGTGCCAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCACATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAAC ATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACC AAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCA CCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAAaa ] [+] EMBL AT003407 [ nCCCTTT CANCGGTNGNTGCCTCCCT TTNTTNCGGGCCCGTCTGNTNGG TTT CTGCAGGTTNCCAGTCGGTCAAGACCAAGGCCNCA GAA AATGNTCAGNCNGAAAAGAGTCCTCNGAA GGAAGCAGCCTTGTTTGCCAGGACTGCNA AGNAAACGGTNCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTNAATTCNTGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGNAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGANCAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTaaaaaaa ] [+] EMBL BI794877 [ CGCTCGCTGCCT CCT TTCT CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAA CAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCCATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAAC GCCGT TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGT CGGTAGCTGCACATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGA C ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAAC ATTTGTGCTCCAGGATTGGGCCAATTTCAGGCACC AAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAaaaa ] [+] EMBL CA999104 [ CCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAAAAAaa ] [+] EMBL C73832 [ ccgGGGAAATCTTGTGCGGTA NTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTNTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACANTTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAAggggtt ] [+] EMBL AU164214 [ TGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAAaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||