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Oryza sativa
cluster # 13262 cluster # 13262       Sequences # 12       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13262#0 length = 748 sequences # 12  

consensusID : consensus_13262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 748
fasta sequence
                              [GTCCATCTCTCCTCTCCTCGCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC-TCAAACCCGCCCCTT-CCCCGCTCGCTGCCT-CCT-TTCT--CCGGCCCGTCT-CT-CG-CTT-CTCCAGGTT-CCAGTCCGTCAAGACCAAGGCCACA-GAA-AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA-AGGAAACGGTGCAATAGTGTGCAACCAGTG-CAAGGGAGATGGGGTGAATTC-TGTCGATCACTTCAACGGCCGA-TTTAAAGCTGGAGCATTATGCTGGC-TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA-ATGGTGCT-GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA-ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAACATGGGAAGTTGGGAACCCAGCCACAATT]

[+] EMBL AK060439             [GTCCATCTCTCCTCTCCTCGCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT  CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAACATGGGAAGTTGGGAACCCAGCCACAATT]
[+] EMBL OSS14439A            [                   GCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT  CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGATCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAA CAGTG CAAGGGAGATGGGGTGAATTCTTGTCGATCACTTCAACGGCCGATTTTAAAGCTGGAGCATTATGCTGGCTTTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAG TGCA ATGGTGCTGGGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCA                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU096612             [                    CTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAG NTCAACGCGACCGCCGCNTCCCCTCCGCTCTTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT  CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGATCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCAAAAa                                                                                                  ]
[+] EMBL CB681832             [                        CGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT  CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATG                                                                                                                                           ]
[+] EMBL OSR25321A            [                            CGCTCGCTCTCTCGCTCGCTGCTCCCAAATGGCGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGATCCTCC TCAAACCCGCCCCTT CCCCGNTCGNTGCCT ACT TTTT  CCGGCCCGTCT AT AG CTT CTCCAGGTT CCAGTCCNTCAAGACCAAGGNCACA GAA AATGATCAGACCGAAAAGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AT003530             [                                                                                                   CGCTCCTCC TCAAACCCGCCCCTT CCCCGCTCGCTGCCT CCT TTCT  CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAG CCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTaaaaaaa                                                                                                           ]
[+] EMBL BI805575             [                                                                                                       CCTCCGTCAAACCCGCCCCTTGCCCCGCTCGCTGCCT CCTGTTCT  CCGGCCCGTCT CT CGTCTTCCTCCAGGTT CCAGTCCGTCAAGACCAGGCCCACAGGAAGAATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCCTTGTCTGCCAGGACTGCGAGAGGAAACGGTGC ATAGTGTGCAACCAGTGCCAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCACATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAAC ATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACC AAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCA CCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAAaa                                                             ]
[+] EMBL AT003407             [                                                                                                                     nCCCTTT CANCGGTNGNTGCCTCCCT TTNTTNCGGGCCCGTCTGNTNGG TTT CTGCAGGTTNCCAGTCGGTCAAGACCAAGGCCNCA GAA AATGNTCAGNCNGAAAAGAGTCCTCNGAA GGAAGCAGCCTTGTTTGCCAGGACTGCNA AGNAAACGGTNCAATAGTGTGCAACCAGTG CAAGGGAGATGGGGTNAATTCNTGTCGATCACTTCAACGGCCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGNAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGANCAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTaaaaaaa                                                                                                           ]
[+] EMBL BI794877             [                                                                                                                                CGCTCGCTGCCT CCT TTCT  CCGGCCCGTCT CT CG CTT CTCCAGGTT CCAGTCCGTCAAGACCAAGGCCACA GAA AATGATCAGACCGAAAAGAGTCCTCCGAAGGGAA CAGCCTTGTCTGCCAGGACTGCGA AGGAAACGGTGCCATAGTGTGCAACCAGTG CAAGGGAGATGGGGTGAATTC TGTCGATCACTTCAAC GCCGT TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGT CGGTAGCTGCACATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGA C  ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAAC ATTTGTGCTCCAGGATTGGGCCAATTTCAGGCACC AAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAaaaa                                                                                                          ]
[+] EMBL CA999104             [                                                                                                                                                                                                                                                                                                                                                        CCGA TTTAAAGCTGGAGCATTATGCTGGC TTTGCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAAAAAaa                                                                                        ]
[+] EMBL C73832               [                                                                                                                                                                                                                                                                                                                                                                                                   ccgGGGAAATCTTGTGCGGTA NTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTNTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACANTTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAAggggtt                                                                                                                                                 ]
[+] EMBL AU164214             [                                                                                                                                                                                                                                                                                                                                                                                                               TGTGCGGTAGCTGCA ATGGTGCT GGCTTCTTAGGTGGATTCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGTTTGTGTTTGTATTTTGTATTTGAGCA ATTTTGAGGAATCTGTAATATTTCCACTTTGTGTCATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTCTGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACTTAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAAaaaa                         ]


>consensus_13262#0 GTCCATCTCTCCTCTCCTCGCTCTCGCTCGCTCGCTCTCTCGCTCGCTGCTCCCAAATGG CGGCCACCTCGAGCCTCACGGCGACCGCCGCCTCCCCTCCGCTCCTCCTCAAACCCGCCC CTTCCCCGCTCGCTGCCTCCTTTCTCCGGCCCGTCTCTCGCTTCTCCAGGTTCCAGTCCG TCAAGACCAAGGCCACAGAAAATGATCAGACCGAAAAGAGTCCTCCGAAGGGAAGCAGCC TTGTCTGCCAGGACTGCGAAGGAAACGGTGCAATAGTGTGCAACCAGTGCAAGGGAGATG GGGTGAATTCTGTCGATCACTTCAACGGCCGATTTAAAGCTGGAGCATTATGCTGGCTTT GCAGAGGAAAGCGGGAAATCTTGTGCGGTAGCTGCAATGGTGCTGGCTTCTTAGGTGGAT TCATGAGTACTTCCGATTCAACTGCAGAGTAGTGTGAATGGTTTATATTCTTCTTTTGGT TTGTGTTTGTATTTTGTATTTGAGCAATTTTGAGGAATCTGTAATATTTCCACTTTGTGT CATCTTGAACAATTTGTGCTCCAGGATTGGGGCAATTTCAGGCACCAAAGCGTATAACTC TGTATTATGTCACTACTAGAAGTATCTTATTGCTCTCAGCCTCTCATAACGAAAGAAACT TAGTTTGGGAACTTATTATGATGAATATTAATTTGTACTGTGTTTTCATGTGGCGTAAAC ATGGGAAGTTGGGAACCCAGCCACAATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)