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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 716 fasta sequence
[TCGCAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA-CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAAAAAAAAAAAAAA]
[+] EMBL CF282023 [TCGCAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCG CGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCT CCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGC CAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTG ]
[+] EMBL CF305266 [ CAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTC ]
[+] EMBL AK059190 [ AGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTTGCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTA ]
[+] EMBL CF291257 [ ATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTNTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATT ]
[+] EMBL CF281485 [ ATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCCCAGAACAA CCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACC ]
[-] EMBL CF281486 [ ACCTCGATCTCCGCCGGAGAGGGCGTCCGCCGCCATGTCCCAGAACAACCCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTAATAAATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTAAAAAAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGTGCATATCTCCAAaaaa ]
[+] EMBL CF329296 [ GTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTT ]
[-] EMBL CF329297 [ TATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAAAAAAAAAAAAAA]
[+] EMBL C98227 [ cgGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAAAAAAAAAAAAAAAAA]
consensusID : consensus_13268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 643 fasta sequence
[GGCCGCTCCACATCAGAATGGGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTC-AACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAA-CAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCC-G-TGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTGTTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTGCAATGGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAATCTTTTTGCTGCAAAAAAAAAAAAAA]
[+] EMBL BI305584 [GGCCGCTCCACATCAGAATGGGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTC AACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAA CAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCC G TGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTGTTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTGCAATGGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAATCTTT ]
[+] EMBL CB967470 [ CATCAGAATGGGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTC AACATGGTGCTCGAGGACGTTACTGAGTATGAATta ]
[-] EMBL CF282022 [ TGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTCGTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAAACATGGTGCTCGAGGACGTTACTGAGTATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACCAATATAGCTATTTTGGTTCCTGGTGGTTCT CCCCAGATGTGGCATAAGCAAGCACTTCCTGNTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTTTTAGTTAACTGACCTGAAGTAGTGTACCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTTTTTTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGATAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAATCTTTTTGCTGCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13268#0 TCGCAGTTGGAATCCTCCACCCAAAGCAGAAGCCTCCGCCGCCGCAGCGCCGCTACTCTT 60
consensus_13268#1 ------------------------------------------------------------
consensus_13268#0 GCATCGCCTCCGCCGTAGCCGCGCGCGCCCTTCCCGTCGCCGCTTCCACCTCGATCTCCG 120
consensus_13268#1 -------------------------------------GGCCGCT-CCACATCAGAATG-- 20
****** **** ** *
consensus_13268#0 CCGGAGAGGGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAG 180
consensus_13268#1 --GGAGAGTGCGTCCGCCGCCATGTCTCAGAACAACCCCTCCCAGCTCCTCCCCTCAGAG 78
****** ***************************************************
consensus_13268#0 CTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTGATTATGAAGGGTGACAAGGAGCTC 240
consensus_13268#1 CTGATTGACCGCTGCATCGGGTCCAAGATTTGGGTAATTATGAAGGGTGACAAGGAGCTC 138
*********************************** ************************
consensus_13268#0 GTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAG 300
consensus_13268#1 GTCGGCACTCTCTGTGGGTTCGATGTGTACGTCAACATGGTGCTCGAGGACGTTACTGAG 198
************************************************************
consensus_13268#0 TATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGC 360
consensus_13268#1 TATGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGC 258
************************************************************
consensus_13268#0 AACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACT 420
consensus_13268#1 AACAATATAGCTATTTTGGTTCCTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACT 318
************************************************************
consensus_13268#0 TCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAAT 480
consensus_13268#1 TCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGGTGTTTCCTTACTTCAAAT 378
************************************************************
consensus_13268#0 GTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTA 540
consensus_13268#1 GTGTTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTA 438
** *********************************************************
consensus_13268#0 CCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCT 600
consensus_13268#1 CCTGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCT 498
************************************************************
consensus_13268#0 GTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGA 660
consensus_13268#1 GTTTATTACCATTCTTCTGCAACCTGACTCAGTAAACACTAGGTGGTTGAAGAAACCTGA 558
************************************************************
consensus_13268#0 TAATGGAGAGCATATCTACAATTGTTGTATTTGTGGTTCAGCAAAAAAAAAAAAAA---- 716
consensus_13268#1 TAATGGAGAGCATATCTGCAATGGTTGTATTTGTGGTTCAGCAGTGTTGGACTTGATAAT 618
***************** **** ******************** * *
consensus_13268#0 -------------------------
consensus_13268#1 CTTTTTGCTGCAAAAAAAAAAAAAA 643
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||