cluster # 13270

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Oryza sativa
cluster # 13270 cluster # 13270 Sequences # 12 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13270#0 length = 1351 sequences # 1
consensus_13270#1 length = 1154 sequences # 8

consensus_13270#2 length = 635 sequences # 1
consensus_13270#3 length = 307 sequences # 1
consensus_13270#4 length = 203 sequences # 1

consensusID : consensus_13270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1351
fasta sequence

                              [GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCCACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCCGTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCGCGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGCGCGCCGATCGATCGATCGATCGAGGAGGAGCCCTCTACGAGATGGCGGCGGCGGCGGTGCGGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACCGGAGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGGCGACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGACTGGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCATGTCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGTCAGGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGAAGCTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAAACCGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGGTACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAAAACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGACTGCACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGATCTCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAATGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGAGAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAACGAAATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGTACTAAAAATCTCCAAATAAAATATCATGGCCACT]

[+] EMBL AK058528             [GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCCACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCCGTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCGCGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGCGCGCCGATCGATCGATCGATCGAGGAGGAGCCCTCTACGAGATGGCGGCGGCGGCGGTGCGGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACCGGAGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGGCGACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGACTGGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCATGTCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGTCAGGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGAAGCTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAAACCGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGGTACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAAAACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGACTGCACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGATCTCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAATGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGAGAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAACGAAATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGTACTAAAAATCTCCAAATAAAATATCATGGCCACT]




>consensus_13270#0
GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCC
ACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCC
GTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCG
CGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGC
GCGCCGATCGATCGATCGATCGAGGAGGAGCCCTCTACGAGATGGCGGCGGCGGCGGTGC
GGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACCGG
AGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCC
ACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCT
ACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGGCG
ACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGACT
GGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCATG
TCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGTCA
GGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGAAG
CTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAAAC
CGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGGTA
CTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAAAA
CAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGACTG
CACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGATC
TCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAATG
TGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGAGA
AGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAACGA
AATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGTACT
AAAAATCTCCAAATAAAATATCATGGCCACT

consensusID : consensus_13270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1154
fasta sequence

                              [CTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGT-G-CTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA-CGG-CCACTACATC-TGC-TTCTTCC-AGAAACC-TGG-AGTG-GCCG-AAGCTGAATTTGG--TAGAGGTGA-TATAAAGTGT-CTC-TTGAAG-AAATTCTAT-GGAATGCGCAAGGCAGCACCTCTGATTAT-ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG-CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA-AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA--A--AAAAGAATCTGTTCA]

[+] EMBL AK102341             [CTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGT G CTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG AGTG GCCG AAGCTGAATTTGG  TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACT                                                   ]
[+] EMBL AK109484             [ TCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGT G CTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG AGTG GCCG AAGCTGAATTTGG  TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA  A  TCAAGca        ]
[+] EMBL C71971               [         GTCGTCTACTACTNGGCCAGGTGAGGTGCCCAANCANCGCCGTGGTAGNNAGCGCGCNANATGGCGGCGGCGGAGGTNAGGCACCGNACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCG CGTNGACTGCTCGTCCACGGTTTCCCGGAGCTCTGGTACTCGTGGCGCCACCANATGCGCGCCCTCGCCGCGCGGGGTTTCCGCGCCGTGGCG CCGACCTCCGCGGCTACGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB683173             [                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG AGTG GCCG AAGCTGAATTTGG  TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACTTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA  A  AAAAGg         ]
[+] EMBL AU030353             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCGTCGAGTACCACCCGC GAACCCCACGAGG GCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG NGTG GCCG AAGCTGAATTTGG  TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGA GTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA  ATCAAAAaa         ]
[+] EMBL AU030519             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cttaggnccCCTTTTCCGGGGACCGGCCCATTACATCTTGCTTTCTTCCNAGAAACCTTGGNATTGCCCCGAAAGCTGAATTTGGGTTAGAGGTGATTATAAAGTNTCCTCTTTGAAGAAAATNCTTTGGGAATCCCCAAGNCAGCACCTCTGATTATCCCCCCCAGGCAAGACTTTATTTGACNCAATTGATTCAGATGGTACTTCCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGA GTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA  ATCAAAAaa         ]
[+] EMBL BI805802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAGAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGT C AAATCTCTTGGA CCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCC AATATATTGTGAATTTCAAATCA  ACCAGTTTCTGTTCA]
[+] EMBL AU078114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCACAAGGGTGGTCTAAAGGNATGTGTNCCAAATNTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGANGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA  A  A              ]




>consensus_13270#1
CTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGA
GCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTG
CGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGTGCTGCTCGTCCACGGC
TTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTC
CGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGAC
TCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAG
CCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTG
CTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAAC
CCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGACGGCCACTACATCTGC
TTCTTCCAGAAACCTGGAGTGGCCGAAGCTGAATTTGGTAGAGGTGATATAAAGTGTCTC
TTGAAGAAATTCTATGGAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGGCAAGACT
TTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATT
TCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGA
TGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAAAGTTCCG
ACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTAC
ATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAG
GGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGG
TTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGT
AAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAAAA
AAAGAATCTGTTCA

consensusID : consensus_13270#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [GCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGAAGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTGGAAGAATTGGTTATCATGGAGGGTGTTGCACATTTCATAAACCAGGAGAAACCAGATGAGGTGTCCGATCATATTGGCCCGCCTCCGCCACGTGCAGGCGCACCCCGCTTGCCACCTCCACCGTCCGGTGCCTCACCTCCGCCGCCGCCATGTCGCGCGCTCGCTACCA]

[-] EMBL CB683585             [GCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGAAGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTGGAAGAATTGGTTATCATGGAGGGTGTTGCACATTTCATAAACCAGGAGAAACCAGATGAGGTGTCCGATCATATTGGCCCGCCTCCGCCACGTGCAGGCGCACCCCGCTTGCCACCTCCACCGTCCGGTGCCTCACCTCCGCCGCCGCCATGTCGCGCGCTCGCTACCA]




>consensus_13270#2
GCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGACGGCCACTA
CATCTGCTTCTTCCAGAAACCTGGAGTGGCCGAAGCTGAATTTGGTAGAGGTGATATAAA
GTGTCTCTTGAAGAAATTCTATGGAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGG
CAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGA
AGACATTTCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTA
CTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAA
AGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAA
AGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTGGAAGAATTGGTTAT
CATGGAGGGTGTTGCACATTTCATAAACCAGGAGAAACCAGATGAGGTGTCCGATCATAT
TGGCCCGCCTCCGCCACGTGCAGGCGCACCCCGCTTGCCACCTCCACCGTCCGGTGCCTC
ACCTCCGCCGCCGCCATGTCGCGCGCTCGCTACCA

consensusID : consensus_13270#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [CAAGCGGCACAGAGCGCGAGTCATGCGACCCACACCGCCCAAATCCTCGGAACGCAAAGCTCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCCGGAGACGGGCGTCGTGCTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGATGCGCGCCTGCGCCGGGGTTCGCG]

[+] EMBL AU078140             [CAAGCGGCACAGAGCGCGAGTCATGCGACCCACACCGCCCAAATCCTCGGAACGCAAAGCTCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCCGGAGACGGGCGTCGTGCTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGATGCGCGCCTGCGCCGGGGTTCGCG]




>consensus_13270#3
CAAGCGGCACAGAGCGCGAGTCATGCGACCCACACCGCCCAAATCCTCGGAACGCAAAGC
TCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCA
ACCACCGCCGTGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTG
GAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCCGGAGACGGGCGTCGTG
CTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGATGCGCGCCTGCGCCGGG
GTTCGCG

consensusID : consensus_13270#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [GCAAGCGGCACAGAGCGCGAGTNATGCGACCCANACCGCCCAAATNCTNGGAACGCAAAGCTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACTACTCGGNCANGTGAGGTGCCCAACCANCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGANGTTTAGGAACCGGACGGTNGAAGTGGCAANCGGGGTGCG]

[+] EMBL AU065732             [GCAAGCGGCACAGAGCGCGAGTNATGCGACCCANACCGCCCAAATNCTNGGAACGCAAAGCTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACTACTCGGNCANGTGAGGTGCCCAACCANCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGANGTTTAGGAACCGGACGGTNGAAGTGGCAANCGGGGTGCG]




>consensus_13270#4
GCAAGCGGCACAGAGCGCGAGTNATGCGACCCANACCGCCCAAATNCTNGGAACGCAAAG
CTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACTACTCGGNCANGTGAGGTGCCC
AACCANCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGANGTTTAGGAACCGGACG
GTNGAAGTGGCAANCGGGGTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13270#0      GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCC 60
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      ------------------------------------------------------------
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      ACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCC 120
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      ------------------------------------------------------------
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      GTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCG 180
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      ------------------------------------------------------------
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      CGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGC 240
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      ----------------------------------CTCCTACTAGTCGTCTACTACTCGGC 26
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      GCGCCGATCGATCGATCGATCGAGGAGGAGCCC--TCTACGAGATGGCGGCGGCGGCGGT 298
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      CAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGT 86
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      GCGGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACC 358
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      GAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCC 146
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      GGAGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCG 418
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      GGAGGACGGGCCCGCCGTGCTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCG 206
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      CCACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGG 478
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      CCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGG 266
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      CTACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGG 538
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      CTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGG 326
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      CGACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGA 598
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      CGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGA 386
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      CTGGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCA 658
consensus_13270#2      ------------------------------------------------------------
consensus_13270#1      CTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTT 446
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      TGTCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGT 718
consensus_13270#2      ---------------------------GCGGAACCCCACGAGGAGCCCCGTACAAACCCT 33
consensus_13270#1      CGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCT 506
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      CAGGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGA 778
consensus_13270#2      CAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGA 93
consensus_13270#1      CAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGA 566
consensus_13270#3      -----------------------------------------------------CAAGCGG 7
consensus_13270#4      ----------------------------------------------------GCAAGCGG 8
                                                                                 * 

consensus_13270#0      AGCTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAA 838
consensus_13270#2      AGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAA 153
consensus_13270#1      AGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAA 626
consensus_13270#3      CACAGAGCGCGAGTCATGCGACCCACACCGCCC--------AAATCCTCGGAACGCA-AA 58
consensus_13270#4      CACAGAGCGCGAGTNATGCGACCCANACCGCCC--------AAATNCTNGGAACGCA-AA 59
                         * **    *    *   **   * *    *            *    **** **  **

consensus_13270#0      ACCGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGG 898
consensus_13270#2      GGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGG 213
consensus_13270#1      GGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGG 686
consensus_13270#3      GCTCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACT-ACTCGGCCAGGTGAGGTGC 117
consensus_13270#4      GCTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACT-ACTCGGNCANGTGAGGTGC 118
                            *  **   * * **  *     * ** * *    * *  *       * ** ** 

consensus_13270#0      TACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAA 958
consensus_13270#2      TACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAA 273
consensus_13270#1      TACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAA 746
consensus_13270#3      CCAACCACCGCCGTG-TAGCGAGCGCGCGACATG-------GCGGCGGCGGAGGTG-AGG 168
consensus_13270#4      CCAACCANCGCCGTGGTAGCGAGCGCGCGACATG-------GCGGCGGCGGANGTTTAGG 171
                               *  * **      **     *****          *  *    *        

consensus_13270#0      AACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGAC 1018
consensus_13270#2      GACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGAC 333
consensus_13270#1      GACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGAC 806
consensus_13270#3      CACCGG----ACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCC 224
consensus_13270#4      AACCGG----ACGGTNGAAGTGGCAANCGGGGTGCG------------------------ 203
                        ** **    ** *  *   *      *       *                        

consensus_13270#0      TGCACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGA 1078
consensus_13270#2      TGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGA 393
consensus_13270#1      TGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGA 866
consensus_13270#3      GGAGACGGGCGTCGTGCTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGAT 284
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      TCTCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAA 1138
consensus_13270#2      CCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATG 453
consensus_13270#1      CCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATG 926
consensus_13270#3      GCGCGCCTGCGCCGGGGTTCGCG------------------------------------- 307
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      TGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGA 1198
consensus_13270#2      TGTGCCAAATCTGGAAGAATTGGTTATCATGGAGGGTGTTGCACATTTCATAAACCAGGA 513
consensus_13270#1      TGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGA 986
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      GAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAAC 1258
consensus_13270#2      GAAACCAGATGAGGTGTCCGATCATATTGGCCCG--CCTCCGCCACGTGCAGGCGCACCC 571
consensus_13270#1      GAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAA-GTTCTGATATGTGC 1045
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      GAAATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGT- 1317
consensus_13270#2      CGCTTGCCACCTCCACCGTCCGGTGCCT-CACCTCCGCCGCCGCCATG--TCGCGCGCTC 628
consensus_13270#1      AAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCA-TTATGCCAGT 1104
consensus_13270#3      ------------------------------------------------------------
consensus_13270#4      ------------------------------------------------------------
                                                                                   

consensus_13270#0      ACTAAAAATCTCCAAATAAAATATCATGGCCACT---------------- 1351
consensus_13270#2      GCTACCA------------------------------------------- 635
consensus_13270#1      ACTGATATCTTCCAAATATATTGTGAATTTCAAAAAAAAGAATCTGTTCA 1154
consensus_13270#3      --------------------------------------------------
consensus_13270#4      --------------------------------------------------