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Oryza sativa
cluster # 13274 cluster # 13274       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13274#0 length = 860 sequences # 11  
consensus_13274#1 length = 378 sequences # 1  

consensusID : consensus_13274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 860
fasta sequence
                              [ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC-T-GGACGCCC-AGCCGGAGCTCTTCAT-CCGCCTCGTCCCCTACAA-GCCCTCCAAGAC-TCTCTCCATCATCGACAGCGGC-GTCGGCATGACCAAGTCC-GACCTCGTGAACAATTT-GGGCACCATCGCGCGCTCCGGCACCAAGGAG-TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC-ACCGTC-ACCCTCGACACCGCCGGCGAGC-GCCTCGGCCGC-GG-CACCAAGA-TCACCCTCTTCCTCAAGGACGACCAGCTCG-AGTACCTGGAGGAGCGCCGCCTCAAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGCAAGGAGAAGGAAGGCGACAT]

[+] EMBL AK063568             [ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC ACCGTC ACCCTCGACACCGCCGGCGAGC GCCTCGGCCGC GG CACCAAGA TCACCCTCTTCCTCAAGGACGACCAGCTCG AGTACCTGGAGGAGCGCCGCCTCAAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGCAAGGAGAAGGAAGGCGACAT]
[+] EMBL C28625               [   TCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGNTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC TNNGACGNCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAAGGCCTTCCAAGACTTTTTTCCATCATt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C93526               [ ccgCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C28643               [             TGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGNTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGCTT GGACGCCCAAGCCGGAGCTCTTCATCCCGCCTCGTCCCCTACAA GCCCTNCAAGAC TCTCTTCATCATCGgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C28285               [              GCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGGCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TNTTTCCATNATNGACAGCGGG GTCGGGATTACCAAGTCC GACCTCGTGAAAATTTT GGGGACCATTG GGGGTTNGGGACCAAGGGG TTttt                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU098305             [                ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGCGGTCGGCATGACCAAGTCCGGACCTCGTGAACAATTTGGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTTCATGGAGGCGCTGCANGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTAACTCGTCGCCGAGAAGGTGGTGGTCAACANCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCANGGCGGCGGGTCCTTCAACGGTCAACCTTCGACAACGGCGGCGAGCGGCNTCGGGCGC GGNAACAAAGATTNACCCTCTTCCTCAAGGGAGACCAGCTCG AGTACC                                                                                                                                                             ]
[+] EMBL AU091591             [                ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC ACCGTC ACCCTCGACACCGCCGGCGAAC G CTCGGCCGCGGG CACCAAGA TCANCCTCTTTCTCAAGGACGACCAGCTCGAAGTANCT                                                                                                                                                            ]
[+] EMBL AU098303             [                ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGNCC AGCCGGAGCTCTTCAT CCGNCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU063331             [                                                                                                                                                                                                                                                                                     ACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTNTNCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGAGCGCCGACGTGAGCATGATCGGGCANTTCGGCGTC                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU063553             [                                                                                                                                                                                                                                                                                     ACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGG                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C28322               [                                                                                                                                                                                                                                                                                    nanAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCNTCGTCCCCTACAA GCCCTCCAAGAN TCTTTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGNGCTNCGGNACCAAGGAG TTCATGGAGGCGC                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_13274#0 ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCA GAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTC CTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTC ACCGACAAGAGCAAGCTGGACGCCCAGCCGGAGCTCTTCATCCGCCTCGTCCCCTACAAG CCCTCCAAGACTCTCTCCATCATCGACAGCGGCGTCGGCATGACCAAGTCCGACCTCGTG AACAATTTGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTCATGGAGGCGCTGCAGGCG GGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTC GCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCG CAGGCCGGCGGCTCCTTCACCGTCACCCTCGACACCGCCGGCGAGCGCCTCGGCCGCGGC ACCAAGATCACCCTCTTCCTCAAGGACGACCAGCTCGAGTACCTGGAGGAGCGCCGCCTC AAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAG AAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGC AAGGAGAAGGAAGGCGACAT



consensusID : consensus_13274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence
                              [CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTNTGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCTCGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTGGGACATGGGTCGACAGAG]

[+] EMBL C28525               [CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTNTGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCTCGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTGGGACATGGGTCGACAGAG]


>consensus_13274#1 CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATT GTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGAC GTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTC ATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTN TGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCT CGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTG GGACATGGGTCGACAGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13274#0      ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC 60
consensus_13274#1      ---------------------CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC 39
                                            ***************************************

consensus_13274#0      ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT 120
consensus_13274#1      ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT 99
                       ************************************************************

consensus_13274#0      GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCA 180
consensus_13274#1      GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCC--AGNA 157
                       **************************************************** *   * *

consensus_13274#0      GAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTC 240
consensus_13274#1      GAG-TCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAG-AGATCTTC 215
                       *** *********************************************** ********

consensus_13274#0      CTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTC 300
consensus_13274#1      TCGCG---GCTCATCTCCAACTCTTCTN-TGCGTT--NCAAG-TCCGTTCGGAG----CT 264
                          **   *******************  **** *   **** **** *  ***      

consensus_13274#0      ACCGACAAGAGCAAGCTGGACGCCCAGCCGGAGCTCTTCATCCGCCTCGTCCCCTACAAG 360
consensus_13274#1      ACCG-CAAGAG-AAGT--GGCGCCAG--CGAGTCTCATCGCTCGCCCTCAAGCCT-CAAG 317
                       **** ****** ***   * ****    **   *** **   ****      *** ****

consensus_13274#0      CCCTCCAAGACTCTCTCCATCATCGACAGCGGCGTCGGCATGACCAAGTCCGACCTCGTG 420
consensus_13274#1      CTTNTCATATCGCACGCGCGCAT-GCAAGCCGCTCNGACA--ATTGGGACATGGGTCGAC 374
                       *    **   * * * *   *** *  *** **   * **  *    * *     ***  

consensus_13274#0      AACAATTTGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTCATGGAGGCGCTGCAGGCG 480
consensus_13274#1      AGAG-------------------------------------------------------- 378
                       *                                                           

consensus_13274#0      GGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTC 540
consensus_13274#1      ------------------------------------------------------------
                                                                                   

consensus_13274#0      GCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCG 600
consensus_13274#1      ------------------------------------------------------------
                                                                                   

consensus_13274#0      CAGGCCGGCGGCTCCTTCACCGTCACCCTCGACACCGCCGGCGAGCGCCTCGGCCGCGGC 660
consensus_13274#1      ------------------------------------------------------------
                                                                                   

consensus_13274#0      ACCAAGATCACCCTCTTCCTCAAGGACGACCAGCTCGAGTACCTGGAGGAGCGCCGCCTC 720
consensus_13274#1      ------------------------------------------------------------
                                                                                   

consensus_13274#0      AAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAG 780
consensus_13274#1      ------------------------------------------------------------
                                                                                   

consensus_13274#0      AAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGC 840
consensus_13274#1      ------------------------------------------------------------
                                                                                   

consensus_13274#0      AAGGAGAAGGAAGGCGACAT 860
consensus_13274#1      --------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)