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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 860 fasta sequence
[ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC-T-GGACGCCC-AGCCGGAGCTCTTCAT-CCGCCTCGTCCCCTACAA-GCCCTCCAAGAC-TCTCTCCATCATCGACAGCGGC-GTCGGCATGACCAAGTCC-GACCTCGTGAACAATTT-GGGCACCATCGCGCGCTCCGGCACCAAGGAG-TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC-ACCGTC-ACCCTCGACACCGCCGGCGAGC-GCCTCGGCCGC-GG-CACCAAGA-TCACCCTCTTCCTCAAGGACGACCAGCTCG-AGTACCTGGAGGAGCGCCGCCTCAAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGCAAGGAGAAGGAAGGCGACAT]
[+] EMBL AK063568 [ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC ACCGTC ACCCTCGACACCGCCGGCGAGC GCCTCGGCCGC GG CACCAAGA TCACCCTCTTCCTCAAGGACGACCAGCTCG AGTACCTGGAGGAGCGCCGCCTCAAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGCAAGGAGAAGGAAGGCGACAT]
[+] EMBL C28625 [ TCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGNTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC TNNGACGNCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAAGGCCTTCCAAGACTTTTTTCCATCATt ]
[+] EMBL C93526 [ ccgCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTT ]
[+] EMBL C28643 [ TGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGNTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGCTT GGACGCCCAAGCCGGAGCTCTTCATCCCGCCTCGTCCCCTACAA GCCCTNCAAGAC TCTCTTCATCATCGgc ]
[+] EMBL C28285 [ GCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGGCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TNTTTCCATNATNGACAGCGGG GTCGGGATTACCAAGTCC GACCTCGTGAAAATTTT GGGGACCATTG GGGGTTNGGGACCAAGGGG TTttt ]
[+] EMBL AU098305 [ ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGCGGTCGGCATGACCAAGTCCGGACCTCGTGAACAATTTGGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTTCATGGAGGCGCTGCANGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTAACTCGTCGCCGAGAAGGTGGTGGTCAACANCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCANGGCGGCGGGTCCTTCAACGGTCAACCTTCGACAACGGCGGCGAGCGGCNTCGGGCGC GGNAACAAAGATTNACCCTCTTCCTCAAGGGAGACCAGCTCG AGTACC ]
[+] EMBL AU091591 [ ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC ACCGTC ACCCTCGACACCGCCGGCGAAC G CTCGGCCGCGGG CACCAAGA TCANCCTCTTTCTCAAGGACGACCAGCTCGAAGTANCT ]
[+] EMBL AU098303 [ ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGNCC AGCCGGAGCTCTTCAT CCGNCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACC ]
[+] EMBL AU063331 [ ACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTNTNCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGAGCGCCGACGTGAGCATGATCGGGCANTTCGGCGTC ]
[+] EMBL AU063553 [ ACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGG ]
[+] EMBL C28322 [ nanAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCNTCGTCCCCTACAA GCCCTCCAAGAN TCTTTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGNGCTNCGGNACCAAGGAG TTCATGGAGGCGC ]
consensusID : consensus_13274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTNTGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCTCGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTGGGACATGGGTCGACAGAG]
[+] EMBL C28525 [CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTNTGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCTCGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTGGGACATGGGTCGACAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13274#0 ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC 60
consensus_13274#1 ---------------------CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC 39
***************************************
consensus_13274#0 ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT 120
consensus_13274#1 ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT 99
************************************************************
consensus_13274#0 GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCA 180
consensus_13274#1 GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCC--AGNA 157
**************************************************** * * *
consensus_13274#0 GAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTC 240
consensus_13274#1 GAG-TCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAG-AGATCTTC 215
*** *********************************************** ********
consensus_13274#0 CTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTC 300
consensus_13274#1 TCGCG---GCTCATCTCCAACTCTTCTN-TGCGTT--NCAAG-TCCGTTCGGAG----CT 264
** ******************* **** * **** **** * ***
consensus_13274#0 ACCGACAAGAGCAAGCTGGACGCCCAGCCGGAGCTCTTCATCCGCCTCGTCCCCTACAAG 360
consensus_13274#1 ACCG-CAAGAG-AAGT--GGCGCCAG--CGAGTCTCATCGCTCGCCCTCAAGCCT-CAAG 317
**** ****** *** * **** ** *** ** **** *** ****
consensus_13274#0 CCCTCCAAGACTCTCTCCATCATCGACAGCGGCGTCGGCATGACCAAGTCCGACCTCGTG 420
consensus_13274#1 CTTNTCATATCGCACGCGCGCAT-GCAAGCCGCTCNGACA--ATTGGGACATGGGTCGAC 374
* ** * * * * *** * *** ** * ** * * * ***
consensus_13274#0 AACAATTTGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTCATGGAGGCGCTGCAGGCG 480
consensus_13274#1 AGAG-------------------------------------------------------- 378
*
consensus_13274#0 GGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTC 540
consensus_13274#1 ------------------------------------------------------------
consensus_13274#0 GCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCG 600
consensus_13274#1 ------------------------------------------------------------
consensus_13274#0 CAGGCCGGCGGCTCCTTCACCGTCACCCTCGACACCGCCGGCGAGCGCCTCGGCCGCGGC 660
consensus_13274#1 ------------------------------------------------------------
consensus_13274#0 ACCAAGATCACCCTCTTCCTCAAGGACGACCAGCTCGAGTACCTGGAGGAGCGCCGCCTC 720
consensus_13274#1 ------------------------------------------------------------
consensus_13274#0 AAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAG 780
consensus_13274#1 ------------------------------------------------------------
consensus_13274#0 AAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGC 840
consensus_13274#1 ------------------------------------------------------------
consensus_13274#0 AAGGAGAAGGAAGGCGACAT 860
consensus_13274#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||