These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 860 fasta sequence [ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC-T-GGACGCCC-AGCCGGAGCTCTTCAT-CCGCCTCGTCCCCTACAA-GCCCTCCAAGAC-TCTCTCCATCATCGACAGCGGC-GTCGGCATGACCAAGTCC-GACCTCGTGAACAATTT-GGGCACCATCGCGCGCTCCGGCACCAAGGAG-TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC-ACCGTC-ACCCTCGACACCGCCGGCGAGC-GCCTCGGCCGC-GG-CACCAAGA-TCACCCTCTTCCTCAAGGACGACCAGCTCG-AGTACCTGGAGGAGCGCCGCCTCAAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGCAAGGAGAAGGAAGGCGACAT] [+] EMBL AK063568 [ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC ACCGTC ACCCTCGACACCGCCGGCGAGC GCCTCGGCCGC GG CACCAAGA TCACCCTCTTCCTCAAGGACGACCAGCTCG AGTACCTGGAGGAGCGCCGCCTCAAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAGAAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGCAAGGAGAAGGAAGGCGACAT] [+] EMBL C28625 [ TCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGNTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC TNNGACGNCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAAGGCCTTCCAAGACTTTTTTCCATCATt ] [+] EMBL C93526 [ ccgCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTT ] [+] EMBL C28643 [ TGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGNTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGCTT GGACGCCCAAGCCGGAGCTCTTCATCCCGCCTCGTCCCCTACAA GCCCTNCAAGAC TCTCTTCATCATCGgc ] [+] EMBL C28285 [ GCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGGCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TNTTTCCATNATNGACAGCGGG GTCGGGATTACCAAGTCC GACCTCGTGAAAATTTT GGGGACCATTG GGGGTTNGGGACCAAGGGG TTttt ] [+] EMBL AU098305 [ ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGCGGTCGGCATGACCAAGTCCGGACCTCGTGAACAATTTGGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTTCATGGAGGCGCTGCANGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTAACTCGTCGCCGAGAAGGTGGTGGTCAACANCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCANGGCGGCGGGTCCTTCAACGGTCAACCTTCGACAACGGCGGCGAGCGGCNTCGGGCGC GGNAACAAAGATTNACCCTCTTCCTCAAGGGAGACCAGCTCG AGTACC ] [+] EMBL AU091591 [ ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGGGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTCGCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCGCAGGCCGGCGGCTCCTTC ACCGTC ACCCTCGACACCGCCGGCGAAC G CTCGGCCGCGGG CACCAAGA TCANCCTCTTTCTCAAGGACGACCAGCTCGAAGTANCT ] [+] EMBL AU098303 [ ACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGTTCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCAGAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGNCC AGCCGGAGCTCTTCAT CCGNCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACC ] [+] EMBL AU063331 [ ACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTNTNCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGGCGCTGCAGGCGAGCGCCGACGTGAGCATGATCGGGCANTTCGGCGTC ] [+] EMBL AU063553 [ ACAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCCTCGTCCCCTACAA GCCCTCCAAGAC TCTCTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGCGCTCCGGCACCAAGGAG TTCATGGAGG ] [+] EMBL C28322 [ nanAAGATCCGCTTCGAGAGCCTCACCGACAAGAGCAAGC T GGACGCCC AGCCGGAGCTCTTCAT CCGCNTCGTCCCCTACAA GCCCTCCAAGAN TCTTTCCATCATCGACAGCGGC GTCGGCATGACCAAGTCC GACCTCGTGAACAATTT GGGCACCATCGCGNGCTNCGGNACCAAGGAG TTCATGGAGGCGC ] consensusID : consensus_13274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTNTGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCTCGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTGGGACATGGGTCGACAGAG] [+] EMBL C28525 [CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGCATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACTGAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCCAGNAGAGTCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGAGATCTTCTCGCGGCTCATCTCCAACTCTTCTNTGCGTTNCAAGTCCGTTCGGAGCTACCGCAAGAGAAGTGGCGCCAGCGAGTCTCATCGCTCGCCCTCAAGCCTCAAGCTTNTCATATCGCACGCGCGCATGCAAGCCGCTCNGACAATTGGGACATGGGTCGACAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13274#0 ATCTCTGCACAGCTGCACTTGCATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC 60 consensus_13274#1 ---------------------CATTTCAGCCAGCGACAAGAAAGCACCAAATCTCTTTGC 39 *************************************** consensus_13274#0 ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT 120 consensus_13274#1 ATTCAAGCAGCAGGCAACATTGTTGAGGAGGGATCACCGATCGGATCGGAGCAGTGAACT 99 ************************************************************ consensus_13274#0 GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTTCCAGGCA 180 consensus_13274#1 GAAATGGCGGCGGCGGGGGACGTGCAGATGGCGGAGAAGGAGACGTTCGCGTCC--AGNA 157 **************************************************** * * * consensus_13274#0 GAGATCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTC 240 consensus_13274#1 GAG-TCAACCAGCTGCTCTCCCTCATCATCAACACCTTCTACTCCAACAAG-AGATCTTC 215 *** *********************************************** ******** consensus_13274#0 CTCCGCGAGCTCATCTCCAACTCTTCTGATGCGCTTGACAAGATCCGCTTCGAGAGCCTC 300 consensus_13274#1 TCGCG---GCTCATCTCCAACTCTTCTN-TGCGTT--NCAAG-TCCGTTCGGAG----CT 264 ** ******************* **** * **** **** * *** consensus_13274#0 ACCGACAAGAGCAAGCTGGACGCCCAGCCGGAGCTCTTCATCCGCCTCGTCCCCTACAAG 360 consensus_13274#1 ACCG-CAAGAG-AAGT--GGCGCCAG--CGAGTCTCATCGCTCGCCCTCAAGCCT-CAAG 317 **** ****** *** * **** ** *** ** **** *** **** consensus_13274#0 CCCTCCAAGACTCTCTCCATCATCGACAGCGGCGTCGGCATGACCAAGTCCGACCTCGTG 420 consensus_13274#1 CTTNTCATATCGCACGCGCGCAT-GCAAGCCGCTCNGACA--ATTGGGACATGGGTCGAC 374 * ** * * * * *** * *** ** * ** * * * *** consensus_13274#0 AACAATTTGGGCACCATCGCGCGCTCCGGCACCAAGGAGTTCATGGAGGCGCTGCAGGCG 480 consensus_13274#1 AGAG-------------------------------------------------------- 378 * consensus_13274#0 GGCGCCGACGTGAGCATGATCGGGCAGTTCGGCGTCGGCTTCTACTCCGCCTACCTCGTC 540 consensus_13274#1 ------------------------------------------------------------ consensus_13274#0 GCCGAGAAGGTGGTGGTCACCACCAAGCACAACGACGACGAGCAGTACGTGTGGGAGTCG 600 consensus_13274#1 ------------------------------------------------------------ consensus_13274#0 CAGGCCGGCGGCTCCTTCACCGTCACCCTCGACACCGCCGGCGAGCGCCTCGGCCGCGGC 660 consensus_13274#1 ------------------------------------------------------------ consensus_13274#0 ACCAAGATCACCCTCTTCCTCAAGGACGACCAGCTCGAGTACCTGGAGGAGCGCCGCCTC 720 consensus_13274#1 ------------------------------------------------------------ consensus_13274#0 AAGGACCTCGTCAAGAAGCACTCCGAGTTCATCAGCTACCCCATCTACCTCTGGTCCGAG 780 consensus_13274#1 ------------------------------------------------------------ consensus_13274#0 AAGACCACCGAGAAGGAGATCAGCGACGACGAGGACGACGACATTGACGACTCCAAAGGC 840 consensus_13274#1 ------------------------------------------------------------ consensus_13274#0 AAGGAGAAGGAAGGCGACAT 860 consensus_13274#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||