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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1484 fasta sequence
[TTTTTTTAAAACTGTGAAACCATTCATCGTATAAAACTCA-AATGCTG-TGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATA-TG-TGTGCA-TTGGCTG-TTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGG-GGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCG-TTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCG-TGACCGA-CATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCTGAAACAGAAAAGAACAATGAGCAGTGCTGATGAAACAAGCATGCAGCATTAGTAGCTTGTTAATACAATTGCTAAATTAGTTGAAGCATACCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAAACCCAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCNCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACCTGAACAAATAAATAACAAAAAACAAACTCTTTTATCATTCATTAGAATAAAGACAATCGAGAACTAACAAAGAGTATCTAGAGGGACTTACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCG]
[-] EMBL BM037797 [TTTTTTTAAAACTGTGAAACCATTCATCGTATAAAACTCA AATGCTG TGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATA TG TGTGCA TTGGCTG TTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGG GGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCG TTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCG TGACCGA CATGGTTGCTA ]
[+] EMBL CB626927 [ AAACTGTGAAACCATTCATCGTATAAAACTCACACTGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGGCGGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCGACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCTGAAACAGAAAAGAACAATGAGCAGTGCTGATGAAACAAGCATGCAGCATTAGTAGCTTGTTAATACAATTGCTAAATTAGTTGAAGCATACCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAAACCCAGCAAAGCAAAA ]
[-] EMBL CB677671 [ CAAAGACATAACTCTCGACAAGGCTGTGNCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCNCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACCTGAACAAATAAATAACAAAAAACAAACTCTTTTATCATTCATTAGAATAAAGACAATCGAGAACTAACAAAGAGTATCTAGAGGGACTTACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCG]
consensusID : consensus_13276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1372 fasta sequence
[AAATAAAACTGTGAAACCATTCATCGTATAAAAAT-CAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC--AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA-CGCCTGCTTCACCGCTTAATTTGTATCATCT-CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAAGCCGACGACGACGAGTCGAGGGAGAGGTTGGCGGCTGTTAGGTGCGGTGGTGGACTAG]
[-] EMBL AK102376 [AAATAAAACTGTGAAACCATTCATCGTATAAAAAT CAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAAGCCGACGACGACGAGTCGAGGGAGAGGTTGGCGGCTGTTAGGTGCGGTGGTGGACTAG]
[+] EMBL CB659874 [ AAACTGTGAAACCATTCATCGTATAAAAAT CACATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATA ]
[-] EMBL CA764776 [ TGTGAANCCATTCATCGTATAAANCTCCAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTACAAAAAAAAAGACGACCGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAACCGCCTGCTTCACCGCTTAATTTGTATCATCTCCCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGC TATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGGCGGACTCCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCGACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCGAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCAT ]
[-] EMBL AU082924 [ ttttTATAAAAAT CAAATGCTGTTGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCG ANGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGNTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCAC ]
[+] EMBL CB677672 [ AAAT CAAATGCTGTTGTCATTTCCCTGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGT ATTCT ]
[-] EMBL AK061397 [ aaGCTG TGTCATTTTTCAGATAGGTATTCCCTTGTTACAATGTAC AAAAAAAGACAAACGATATTGTTGTGCATTTGGCTGCTTAAAAACCGAAA CGCCTGCTTCACCGCTTAATTTGTATCATCT CCTGTACAGCTGGATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTATAGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAATCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCAAGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTGTAGAAAATGCCGATAACTGTGAATAGTCCAAGCACGATTACTCCCATGATAAAGAGCAATGGTAACCCTGCTTCTCCAGCACCACCCAAGCAACCACCACACTCTCCAGCTGTCGTTGCACAGCCCTCAAAGCATGTAGTGCAATCTGTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAA ]
[-] EMBL CB659871 [ GTCCACATGCAAAGCGTACCAGGTAGATGGCAATCTGCACACATCCCTGGTTGGCAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCATAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACATATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATCGAATCGAAGC ]
[-] EMBL C71880 [ GTNTCGAGGCAGANCCGGCACTGGAACTGGTCCCCGGCCNCGGCCTCGATNTCGATCTCCGACGGCGGTGGGATNAGCGGCGACGACTCCGACGCCGACGACGCCGCCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTACAACCCTCCTCCTCCTNCCATNCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGANCGAATCGAAGCCG ]
consensusID : consensus_13276#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence
[GTTATAGCAAATAGAAGCAGAGGTGCTTGTTTCGAAGGACACATGCCTCGAATAAGTCACAAGCAAACTATAACATATTCAAGTGACAACAATTACCATGCATTAAACAGGGAAAAGTAGCTTGCTCTTTCGTATTCGATACATATATCATTCACTCTCATATCACATTTCTACACTTAAATTCCTTTTTACAAGCCCATCTCACCCATCATACATGAAACAAGATTGAGCCATTGAGGTTCATCGTGTACGCACTGCACATTTAACCTTGTAAAACCTACAGCTCCCATGTGATTGAGTTATATGGATGCATGGTGAACTATCATGATAATTATTTCAATCAGGGTACAATTTCATCAAACAATCATGCAAAACTAAGTGCAAGAAATAACAAGTTTGATATGATAAAGTAATTTACCACATATGTAATAAAAACTAACTTCATTGTCAAATCCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGTGAAAACGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCGCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCG]
[-] EMBL CB626926 [GTTATAGCAAATAGAAGCAGAGGTGCTTGTTTCGAAGGACACATGCCTCGAATAAGTCACAAGCAAACTATAACATATTCAAGTGACAACAATTACCATGCATTAAACAGGGAAAAGTAGCTTGCTCTTTCGTATTCGATACATATATCATTCACTCTCATATCACATTTCTACACTTAAATTCCTTTTTACAAGCCCATCTCACCCATCATACATGAAACAAGATTGAGCCATTGAGGTTCATCGTGTACGCACTGCACATTTAACCTTGTAAAACCTACAGCTCCCATGTGATTGAGTTATATGGATGCATGGTGAACTATCATGATAATTATTTCAATCAGGGTACAATTTCATCAAACAATCATGCAAAACTAAGTGCAAGAAATAACAAGTTTGATATGATAAAGTAATTTACCACATATGTAATAAAAACTAACTTCATTGTCAAATCCCCAGGCTGTCCTCAACCAGTAATTCTGTAATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGAAGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGTAAGGAGCTTTACAAGTGGTGCAATGTGAAAACGCAAATCCTTCCTTCACGGCTCTCCAGTGGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGAAATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCGCCGGCCTCGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13276#0 TTTTTTTAAAACTGTGAAACCATTCATCGTATAAAACTCAAATGCTGT-GTCATTTTTCA 59
consensus_13276#1 ---AAATAAAACTGTGAAACCATTCATCGTATAAAAATCAAATGCTGTTGTCATTTTTCA 57
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 GATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACGAACGATATG--TGTGCATT-GG 116
consensus_13276#1 GATAGGTATTCCCTTGTTACAATGTACAAAAAAAGACAAACGATATTGTTGTGCATTTGG 117
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 CTG-TTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTG 175
consensus_13276#1 CTGCTTAAAAACCGAAACGCCTGCTTCACCGCTTAATTTGTATCATCTCCTGTACAGCTG 177
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 GATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAACCATGGGCTA-------T 228
consensus_13276#1 GATAGTGCCGCAAGTCCTAAATTAAGGTCATCATTGGTATAATCATGGGCTACAGATTAT 237
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 AGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGCGG-GGACTCCAA 287
consensus_13276#1 AGAAGCCCCAGAGACTTCAGCTGTTGGACATGCTCCGAAGGGAGAGGGGGCGGACACCAA 297
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 TCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTGGTTAACATTCGTTT-GCA 346
consensus_13276#1 TCCGCGCGCTCGCCATCGACATCTTCCACAACATATTCCTTAGTTAACATTCGTTTTGCA 357
consensus_13276#2 --------GTTATAGCAAATAGAAGCAGAGGTGCTTGTTTCGAAGGACACATGCCTCGAA 52
* * * * * * *** * * * *
consensus_13276#0 AGAATATGGTAGTGTCTCTGCCAGATCCG-TGACCGAC-ATGGTTGCTACCAAGACGCTG 404
consensus_13276#1 AGAATATGGTAGTGTCTCTGCCAGATCCGCTGACCCACCATGGTTGCTACCAAGACGCTG 417
consensus_13276#2 TAAGTCACAAGCAAACTATAACATATTCAAGTGACAACAATTACCATGCATTAAACAGGG 112
* * ** * ** ** * * ** ** * ** *
consensus_13276#0 TAGAAAATGCCGATAACT-GTGAATAGTCCAAGCACGATT-ACTCCCATGATAAAGAGCA 462
consensus_13276#1 TAGAAAATGCCGATAACT-GTGAATAGTCCAAGCACGATT-ACTCCCATGATAAAGAGCA 475
consensus_13276#2 AAAAGTAGCTTGCTCTTTCGTATTCGATACATATATCATTCACTCTCATATCACATTTCT 172
* * * * * * ** * ** * *** **** *** * * *
consensus_13276#0 ATGGTAACCCTGCTTCTC-CAGCACCACCCAAGCAACCAC-CACACTCTCCAGCTGTCGT 520
consensus_13276#1 ATGGTAACCCTGCTTCTC-CAGCACCACCCAAGCAACCAC-CACACTCTCCAGCTGTCGT 533
consensus_13276#2 ACACTTAAATTCCTTTTTACAAGCCCATCTCACCCATCATACATGAAACAAGATTGAGCC 232
* * * * *** * ** *** * * * * ** ** **
consensus_13276#0 TGCACAGCCCTCAAAGCATGTAGTGCA-ATCTGTCCACATGCAAAGCGTACCAGGTAGAT 579
consensus_13276#1 TGCACAGCCCTCAAAGCATGTAGTGCA-ATCTGTCCACATGCAAAGCGTACCAGGTAGAT 592
consensus_13276#2 ATTGAGGTTCATCGTGTACGCACTGCACATTTAACCTTGTAAAACCTACAGCTCCCATGT 292
* * * * * * **** ** * ** * ** * * * *
consensus_13276#0 GGC-AATCTGCACACATCCTGAAACAGAAAAGAACAATGAGCAGTGCTGATGAAACAAGC 638
consensus_13276#1 GGC-AATCTGCACACATCC----------------------------------------- 610
consensus_13276#2 GATTGAGTTATATGGATGC----------------------------------------- 311
* * * * ** *
consensus_13276#0 ATGCAGCATTAGTAGCTTGTTAATACAATTGCTAAATTAGTTGAAGCATACCCTGGTTGG 698
consensus_13276#1 ----------------------------------------------------CTGGTTGG 618
consensus_13276#2 -------------------------------------------------------ATGGT 316
* *
consensus_13276#0 CAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCA 758
consensus_13276#1 CAGCAACAAAGACATAACTCTCGACAAGGCTGTGCCAGGTCATTCCGTACTCTTCGGTCA 678
consensus_13276#2 GAACTATCATGATAATTATTTCAATCAGG--GTACAATTTCATCAAACAATCATG---CA 371
* * * * ** * * ** * *** ** * * **** * ** * **
consensus_13276#0 TAACAAGTTATGAAGCATCCTGATAAACCCAGCAAAGCAAAAAATAGCAATGCCCCACAT 818
consensus_13276#1 TAACAAGTTATGAAGCATCCTGATAACCCAAGCAAAGCAAAAAATAGCAATGCCCCACAT 738
consensus_13276#2 AAACTAAGTGCAAGA------AATAA--CAAGTTTGATATGATAAAGTAATTTACCACAT 423
*** * * * **** * ** * * * ** *** ******
consensus_13276#0 ATGTAATAAAAACTAACTTCATTGTCAAATGCNCAGGCTGTCCTCAACCAGTAATTCTGT 878
consensus_13276#1 ATGTAATAAAAACTAACTTCATTGTCAAATGCCCAGGCTGTCCTCAACCAGTAATTCTGT 798
consensus_13276#2 ATGTAATAAAAACTAACTTCATTGTCAAATCCCCAGGCTGTCCTCAACCAGTAATTCTGT 483
****************************** * ***************************
consensus_13276#0 AATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGACCTGAACAAATAAATAA 938
consensus_13276#1 AATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGAC---------------- 842
consensus_13276#2 AATCCATCAATAAAATGCACCAAATACGCTAATGCAGATATGAC---------------- 527
********************************************
consensus_13276#0 CAAAAAACAAACTCTTTTATCATTCATTAGAATAAAGACAATCGAGAACTAACAAAGAGT 998
consensus_13276#1 ------------------------------------------------------------
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 ATCTAGAGGGACTTACAAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGA 1058
consensus_13276#1 ----------------AAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGA 886
consensus_13276#2 ----------------AAACTGCACTAGAGCAAAGATGAATAATATATCTCTAGTAACGA 571
********************************************
consensus_13276#0 AGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGT 1118
consensus_13276#1 AGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGT 946
consensus_13276#2 AGAAACGAAATTTCAATGTTCGCCATTTCCTATCAGTGTGAACATGAACCCTCAAATAGT 631
************************************************************
consensus_13276#0 AAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGT 1178
consensus_13276#1 AAGGAGCTTTACAAGTGGTGCAATGCGAAAAGGCAAATCCTTCCTTCACGGCTCTCCAGT 1006
consensus_13276#2 AAGGAGCTTTACAAGTGGTGCAATGTGAAAACGCAAATCCTTCCTTCACGGCTCTCCAGT 691
************************* ***** ****************************
consensus_13276#0 GGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGA 1238
consensus_13276#1 GGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGA 1066
consensus_13276#2 GGTCGAGGCAGTCGCGGTGGACGTACTTGGACGTCCCCTTGCACTTGCACGGCGCGATGA 751
************************************************************
consensus_13276#0 AATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCT 1298
consensus_13276#1 AATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCCCCGGCCT 1126
consensus_13276#2 AATCCCTCCCGTCGGTCTCGAGGCAGATCCGGCACTGGAACTGGTCCCCGGCGCCGGCCT 811
**************************************************** *******
consensus_13276#0 CGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCG 1358
consensus_13276#1 CGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCGACGACTCCGACGCCGACGACGCCG 1186
consensus_13276#2 CGATGTCGATCTCCGACGGCGGTGGGATCAGCGGCG------------------------ 847
************************************
consensus_13276#0 CCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTAC 1418
consensus_13276#1 CCCCCCGCGCCGGCTGCTCCCCCATCGACGATCCACCGCAGCCTGCCCCCGCGCTTCTAC 1246
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 AACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATC 1478
consensus_13276#1 AACCCTCCTCCTCCTCCCATCCGAAACCCTAGCTCCTCCTCCTCCTCGCCTCGATCGATC 1306
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 GAATCG------------------------------------------------------ 1484
consensus_13276#1 GAATCGAAGCCGACGACGACGAGTCGAGGGAGAGGTTGGCGGCTGTTAGGTGCGGTGGTG 1366
consensus_13276#2 ------------------------------------------------------------
consensus_13276#0 ------
consensus_13276#1 GACTAG 1372
consensus_13276#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||