These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1384 fasta sequence [CTAGAATTGAAATTATTTCTATTGATTTTCCTTGAATTATCTCTTGGTACATTGTGTTTTACGCGTAGTTGGTTAGTTGCTTATGCAGGTAGAGAAAAGAGAAGGGTTTATTAAAGTGTAGCTTTCTAACTATATATCTTGTGCTGTAGACTGTAGCAGTCCTCTTGCTAATTACGCGTGCGCAAGAGAGGGACGGGCGCCGGCGCTGCGCAGGAAATTTTACATAACGCCCAAAAATGGATGAGTGGCTGCCGACGCCATATATCACACACAAGTTGTATTTTTCTAAGCTTTTATTATATCAAAATAGTAAAGTTTTTGAACATATATGATCACGTAAAAGAGCAATCGTCCATCAGTGCTTCCAGTTCCCCCAGGCATATGCTGCACTCCATCTCCGACGACTCATCCCGCCGCGCGGCGATGGTGCGCGTGGTCCGGCAGCCAGATCTTCGGATCAGGCGGCGGCGCACCGGCATGTCGACGTCGGCGATCGGCGCAGCAGAGGAGGAGCACGCACACGGCGTACAGGATGCTGCCGGCGAGGGCCCCTGTGAATAAGGAAAACCCGAACGCTTGCCAGATGGGCAGCTCTTTCAAGAACAGCATCGCGCAACTATATCTTGATAGTATTTGTTTATTTTCTGTTTTTCCAATTCCACTTGAATTGTGTTCTGCGCCGCCCATGCATTTATGCGTAATAATGTGTTGCAAGCATCAATCAGTTATATATGTTGCACCCTTTATATATATGCAGATCCTAAAATAGTAGCATTCCGTTCAAAAAAAAAAATAGTAGCATCAGTGTATTTTAGGTATCTGTACGCACAATATATGGATCTCTTGTTAGCTCGGACTTGATTTTTAATCCTTTTAAGATGAGATAAAAATATTGTTATGATCTGCATACATACAAGAAAGAAATGGATCAACTACGATATTATTATTGCCTGTTGATTGGATCTTTAATTAATCACCGGATAAAAAAAAAAGATCGATCTGTGAGATGCTCTGCTTCCAGAGGCGCGACGAGGCCCTGTCCATGTATGAGTATGAATGTATGATGAGGAGGAGAAGCAAAAGGGTGGCCGTGGCTGCGGCGCAGGAGGACGGTCACGTGTCAGAATCGCATCCGGACCGGACTTGTTCTTCTTCCGCGGGCGGCGCAGCGGAGGCCTCAGGCTTGTGCGGCTTTACGGCTCCTTCACTCAATGCGGTGCTAGCCAGCCAGTAGCCAAGGTCAAGGCTATCGTCACCCGAGATTGAAGATCAAGTGAGTGTTACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCCAAGAGCAAGAAGAAGAAGGAGGCTGCCTCCTCTGCCCTCCCCACTTTGGATAGGCTTCATGAGACTC] [+] EMBL AK107809 [CTAGAATTGAAATTATTTCTATTGATTTTCCTTGAATTATCTCTTGGTACATTGTGTTTTACGCGTAGTTGGTTAGTTGCTTATGCAGGTAGAGAAAAGAGAAGGGTTTATTAAAGTGTAGCTTTCTAACTATATATCTTGTGCTGTAGACTGTAGCAGTCCTCTTGCTAATTACGCGTGCGCAAGAGAGGGACGGGCGCCGGCGCTGCGCAGGAAATTTTACATAACGCCCAAAAATGGATGAGTGGCTGCCGACGCCATATATCACACACAAGTTGTATTTTTCTAAGCTTTTATTATATCAAAATAGTAAAGTTTTTGAACATATATGATCACGTAAAAGAGCAATCGTCCATCAGTGCTTCCAGTTCCCCCAGGCATATGCTGCACTCCATCTCCGACGACTCATCCCGCCGCGCGGCGATGGTGCGCGTGGTCCGGCAGCCAGATCTTCGGATCAGGCGGCGGCGCACCGGCATGTCGACGTCGGCGATCGGCGCAGCAGAGGAGGAGCACGCACACGGCGTACAGGATGCTGCCGGCGAGGGCCCCTGTGAATAAGGAAAACCCGAACGCTTGCCAGATGGGCAGCTCTTTCAAGAACAGCATCGCGCAACTATATCTTGATAGTA TTGTTTATTTTCTGTTTTTCCAATTCCACTTGAATTGTGTTCTGCGCCGCCCATGCATTTATGCGTAATAATGTGTTGCAAGCATCAATCAGCTATATATGTTGCACCCTTTATATATATGCAGATCCTAAAATAGTAGCATTCCGTTC AAAAAAAAAATAGTAGCATCAGTGTATTTTAGGTATCTGTACGCACAATATATGG ] [+] EMBL CB629281 [ TCTTGATAGTATTTGTTTATTTTCTGTTTTTCCAATTCCACTTGAATTGTGTTCTGCGCCGCCCATGCATTTATGCGTAATAATGTGTTGCAAGCATCAATCAGTTATATATGTTGCACCCTTTATATATATGCAGATCCTAAAATAGTAGCATTCCGTTCAAAAAAAAAAATAGTAGCATCAGTGTATTTTAGGTATCTGTACGCACAATATATGGATCTCTTGTTAGCTCGGACTTGATTTTTAATCCTTTTAAGATGAGATAAAAATATTGTTATGATCTGCATACATACAAGAAAGAAATGGATCAACTACGATATTATTATTGCCTGTTGATTGGATCTTTAATTAATCACCGGATAAAAAAAAAAGATCGATCTGTGAGATGCTCTGCTTCCAGAGGCGCGACGAGGCCCTGTCCATGTATGAGTATGAATGTATGATGAGGAGGAGAAGCAAAAGGGTGGCCGTGGCTGCGGCGCAGGAGGACGGTCACGTGTCAGAATCGCATCCGGACCGGACTTGTTCTTCTTCCGCGGGCGGCGCAGCGGAGGCCTCAGGCTTGTGCGGCTTTACGGCTCCTTCACTCAATGCGGTGCTAGCCAGCCAGTAGCCAAGGTCAAGGCTATCGTCACCCGAGATTGAAGATCAAGTGAGTGTTACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCCAAGAGCAAGAAGAAGAAGGAGGCTGCCTCCTCTGCCCTCCCCACTTTGGATAGGCTTCATGAGACTC] [+] EMBL CB629283 [ TCTTGATAGTATTTGTTTATTTTCTGTTTTTCCAATTCCACTTGAATTGTGTTCTGCGCCGCCCATGCATTTATGCGTAATAATGTGTTGCAAGCATCAATCAGTTATATATGTTGCACCCTTTATATATATGCAGATCCTAAAATAGTAGCATTCCGTTCAAAAAAAAAAATAGTAGCATCAGTGTATTTTAGGTATCTGTACGCACAATATATGGATCTCTTGTTAGCTCGGACTTGATTTTTAATCCTTTTAAGATGAGATAAAAATATTGTTATGATCTGCATACATACAAGAAAGAAATGGATCAACTACGATATTATTATTGCCTGTTGATTGGATCTTTAATTAATCACCGGATAAAAAAAAAAGATCGATCTGTGAGATGCTCTGCTTCCAGAGGCGCGACGAGGCCCTGTCCATGTATGAGTATGAATGTATGATGAGGAGGAGAAGCAAAAGGGTGGCCGTGGCTGCGGCGCAGGAGGACGGTCACGTGTCAGAATCGCATCCGGACCGGACTTGTTCTTCTTCCGCGGGCGGCGCAGCGGAGGCCTCAGGCTTGTGCGGCTTTACGGCTCCTTCACTCAATGCGGTGCTAGCCAGCCAGTAGCCAAGGTCAAGGCTATCGTCACCCGAGATTGAAGATCAAGTGAGTGTTACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCCAAGAGCAAGAAGAAGAAGGAGGCTGCCTCCTCTGCCCTCCCCACTTTGGAT ] consensusID : consensus_13277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 948 fasta sequence [TCCGGGGGCGGTGCAGGGTGCGGCCGCACGGCTCGGCGTCGTCAATGCGGGCGATGGTAGCCTGGTAGGTTTGCACTCGTCTGGGGGGATTTGAGAGTCCTTGAGCAAGTGGATCCGTAGCTTTCGTTGGCCATCATCATCTGACAGTAAGAATCCAGAGGTGGGTGTGACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCTCTGCGCTCCCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGTGCTTTCTTCAGAAGAAGGTTTCTGCAGAAGTTGAAAAGGCTAAGGATTATACAAAAGCTAAGAACAAAAGCGCTGCAATTCAGTGTCTAAAGAAAAAGAAGCTGTATGAAACACAAATTGAGCAGCTAGCAAATTTCCAATTGCGAGTTCATGATCAGATAATAATGCTTGAGAGCGCAAAGGCAACCACAGATACCGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCATCAGTCAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAAAATATGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCGACGAGGATGAACTAGAAGCAGAGCTGGAAGATCTGGAGGAGGAAGAGCTCGACCATGAGCTGCCTGAACCACCTCAGAGTACACGCATGGGACCATCAGCGAGAGTTACAACTTCATCTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAATCACAGTTTGGAGGGATTTGTTTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGGAAATAACATGTTGTAAATTCAGTTTGTTGTAGAAAAAAACCCTTCCTTTTATAATTTGTT] [+] EMBL AK070935 [TCCGGGGGCGGTGCAGGGTGCGGCCGCACGGCTCGGCGTCGTCAATGCGGGCGATGGTAGCCTGGTAGGTTTGCACTCGTCTGGGGGGATTTGAGAGTCCTTGAGCAAGTGGATCCGTAGCTTTCGTTGGCCATCATCATCTGACAGTAAGAATCCAGAGGTGGGTGTGACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCTCTGCGCTCCCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGTGCTTTCTTCAGAAGAAGGTTTCTGCAGAAGTTGAAAAGGCTAAGGATTATACAAAAGCTAAGAACAAAAGCGCTGCAATTCAGTGTCTAAAGAAAAAGAAGCTGTATGAAACACAAATTGAGCAGCTAGCAAATTTCCAATTGCGAGTTCATGATCAGATAATAATGCTTGAGAGCGCAAAGGCAACCACAGATACCGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCATCAGTCAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAAAATATGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCGACGAGGATGAACTAGAAGCAGAGCTGGAAGATCTGGAGGAGGAAGAGCTCGACCATGAGCTGCCTGAACCACCTCAGAGTACACGCATGGGACCATCAGCGAGAGTTACAACTTCATCTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAATCACAGTTTGGAGGGATTTGTTTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGGAAATAACATGTTGTAAATTCAGTTTGTTGTAGAAAAAAACCCTTCCTTTTATAATTTGTT] [-] EMBL CF311198 [ TAGCAAATTTCCAATTGCGAGTTCATGATCAGATAATAATGCTTGAGAGCGCAAAGGCAACCACAGATACCGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCATCAGTCAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAAAATATGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCGACGAGGATGAACTAGAAGCAGAGCTGGAAGATCTGGAGGAGGAAGAGCTCGACCATGAGCTGCCTGAACCACCTCAGAGTACACGCATGGAACCATCAGCGAGAGTTACAACTTCATCTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAATCACAGTTTGGAGGGATTTGTTTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGGAAATAACATGTTGTAAATTCAGTTTGTTGTAGAAAAAAACCCTTCCTTTTAAAAaa ] consensusID : consensus_13277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 858 fasta sequence [CTTGCATTTGTGGATATACCATTCCCTGAATATATGGTTATGAACTTATGGTTCCTTAATGTTGAAAAAAATGTTTCTCAAGCTTGTGATGACTTTGTTAATTAAGGTTTAAAGAGTTGAGGGATGAATAATGTCCAGTTTTGAAGTTTAGGGACGAATTTTAGGCTTTGATAGAGTTCAGGGACTTAAAATAATAAAATGTACTTTTCTCTTAGTTAAATGACAAACAACTTCCTGTTTGTTGCAGCTGC-AATTC--AATG-TCTAA----AGAAAAAGAAGTT--GTA-TGAAA-CACAGA-TTGAGCA-GCT-AGC-AAACTTCCAA-TTAC---GGG-TTCATGAT--CA-GATAATAATGCTTGAGAGTGCAAAGGCAACCA-CAGATACTGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCACCAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAGAATATGAGGCAGATA-CAGGAGGCCCTTGCAACACCAATTGGCGCTTCTGCTGATTTTGACGAGGATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTGCCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTACTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTGACCGCAGTTTGGACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGTTTTTTAACATGTTGTAAATTCAGTT-TGCTGTAGAAAAAGCCCTTCCTTTTATGCTAAAAAATGTGTTTCTTCTTCGCTGTTAAAAAAAAA] [-] EMBL CB629284 [CTTGCATTTGTGGATATACCATTCCCTGAATATATGGTTATGAACTTATGGTTCCTTAATGTTGAAAAAAATGTTTCTCAAGCTTGTGATGACTTTGTTAATTAAGGTTTAAAGAGTTGAGGGATGAATAATGTCCAGTTTTGAAGTTTAGGGACGAATTTTAGGCTTTGATAGAGTTCAGGGACTTAAAATAATAAAATGTACTTTTCTCTTAGTTAAATGACAAACAACTTCCTGTTTGTTGCAGCTGC AATTC AATG TCTAA AGAAAAAGAAGTT GTA TGAAA CACAGA TTGAGCA GCT AGC AAACTTCCAA TTAC GGG TTCATGAT CA GATAATAATGCTTGAGAGTGCAAAGGCAACCA CAGATACTGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCACCAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAGAATATGAGGCAGATA CAGGAGGCCCTTGCAACACCAATTGGCGCTTCTGCTGATTTTGACGAGGATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTGCCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTACTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTGACCGCAGTTTGGACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGTTTTTTAACATGTTGTAAATTCAGTTGTGCTGTAGAAAAAGCCCTTCC ] [-] EMBL CB629282 [CTTGCATTTGTGGATATACCATTCCCTGAATATATGGTTATGAACTTATGGTTCCTTAATGTGNAAAAAAATGTTTCTCAAGCTTGTGATGACTTTGTTAATTAAGGTTTAAAGAGTTGAGGGATGAATAATGTCCAGTTTTGAAGTTTAGGGACGAATTTTAGGCTTTGATAGAGTTCAGGGACTTAAAATAATAAAATGTACTTTTCTCTTAGTTAAATGACAAACAACTTCCTGTTTGTTGCAGCTGC AATTC AATG TCTAA AGAAAAAGAAGTT GTA TGAAA CACAGA TTGAGCA GCT AGC AAACTTCCAA TTAC GGG TTCATGAT CA GATAATAATGCTTGAGAGTGCAAAGGCAACCA CAGATACTGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCACCAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAGAATATGAGGCAGATA CAGGAGGCCCTTGCAACACCAATTGGCGCTTCTGCTGATTTTGACGAGGATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTGCCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTACTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTGACCGCAGTTTGGACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGTTTTTTAACATGTTGTAAATTCAGTT TGCTGTAGAAAAAGCCCTTCC ] [+] EMBL BI806410 [ ttcattgaCTGCAAATTCCGAATGTTCTAAAAAGAGAAAAGGAAGTTTGGTATTGAAACCACAGATTTGAGCAGGCTNAGCGAACCTTCCAATTTACCGGGGGTTTCATGATTCCAGGATAATAATGCTTGAGAGTGCAAAGCCAACCA CAGATACTGTTGATGCTTTGCGCTCTGGATCATCT CTGTCAAAGCTATTCACCAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAGAATATGAGGCAGATACCAGGAGGCCCTTGCAACACC ATTGGCGCTTCTGCTGATTTTGACGAGGATGAGCTAGAA CAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTGCCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTACTCAACCAGCCCATGATTTGGCTGAACTGACC AACTTCAAGCAGAGATGGCGCTTTGACC CAGTTTGGACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGTTTTTTAACATGTTGTAAATTCAGTT TGCTGTAGAAAAAGCCCTTCCTTTTATGCTAAAAAA ] [-] EMBL CF312513 [ GCT AGC AAACTTCCAA TTAC GGG TTCATGAT CA GATAATAATGCTTGAGAGTGCAAAGGCAACCACCAGATACTGTTGATGCTTTGCGCTCTGGATCATCTGCTGTCAAAGCTATTCACCAGTCAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAGAATATGAGGCAGATA CAGGAGGCCCTTGCAACACCAATTGGCGCTTCTGCTGACTTTGACGAGGATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTGCCTGAACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTACTCAACCAGCCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTGACCGCAGTTTGGACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGTTTTTTAACATGTTGTAAATTCAGTT TGCTGTAGAAAAAGCCCTTCCTTTTATGCTAATCACTGTGTTTCTTCTTCGCTGTTAAAAAAAAA] consensusID : consensus_13277#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [ATGAGCTGGGGCAAGAGTGAATCCCCTTCCCCCCTCTCACCCTCATGGCTCATGGGCGGTGAGCACCATGTGGTCATCAGTCCGTGTGGTCAACAACGACTTGTGTGCTGTTGTGGAAAACCAACTCAACTCGAGGTGGAGAAATCGCAGGGGCCATTTTTGAGGCTTTTTTGAGACTGTAGCAGTCCTCTTGCTAATTACGCGTGCGCAAGAGAGGGACGGGCGCCGGCGCTCCGCAGGAAATTTTACATAACGCCCAAAAATGGATGAGTGGCTGCCGACGCCATATATCACACACAAGTTGTATTTTTCTAAGCTTTTATTATATCAAAATAGTAAAGTTTTTGAACATATATGATCACGTAAAAGAGCAATCGTCCATCAGTGCTTCAACCCTAAAAGGAAAAA] [-] EMBL CB631787 [ATGAGCTGGGGCAAGAGTGAATCCCCTTCCCCCCTCTCACCCTCATGGCTCATGGGCGGTGAGCACCATGTGGTCATCAGTCCGTGTGGTCAACAACGACTTGTGTGCTGTTGTGGAAAACCAACTCAACTCGAGGTGGAGAAATCGCAGGGGCCATTTTTGAGGCTTTTTTGAGACTGTAGCAGTCCTCTTGCTAATTACGCGTGCGCAAGAGAGGGACGGGCGCCGGCGCTCCGCAGGAAATTTTACATAACGCCCAAAAATGGATGAGTGGCTGCCGACGCCATATATCACACACAAGTTGTATTTTTCTAAGCTTTTATTATATCAAAATAGTAAAGTTTTTGAACATATATGATCACGTAAAAGAGCAATCGTCCATCAGTGCTTCAACCCTAAAAGGAAAAA] consensusID : consensus_13277#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CATGGACTCAAGGAGTAGAAACTCAACGAATCTGACTCTAACCTCCATTTCCTTTACTTTCCCCTCGACTCCTCTTGGTCTTTCACCCTACTGGAACGACCATACAGATTTAGCCATTAATCATCCACCTCTTCCTTCCTAACATAGGCCATCATCATCTGACAGTAAGAATCCAGAGGTGGGTGTGACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCTCTGCGCTCCCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGT] [+] EMBL CF311199 [CATGGACTCAAGGAGTAGAAACTCAACGAATCTGACTCTAACCTCCATTTCCTTTACTTTCCCCTCGACTCCTCTTGGTCTTTCACCCTACTGGAACGACCATACAGATTTAGCCATTAATCATCCACCTCTTCCTTCCTAACATAGGCCATCATCATCTGACAGTAAGAATCCAGAGGTGGGTGTGACAAGAAGATGCTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCTCTGCGCTCCCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGT] consensusID : consensus_13277#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [GAAGGAGTAGAAAAGAGACAAGAGAGTCGGAGCCGCAGCCAGCCAGTGCACTAGGGTCTAGGGCGACTCGCCGAGGTTGTTAACAGCGCATCCGGACCGGACTTGTTCTTCTTCCGCGGGCGGCGCAGCGGAGGCCTCAGGCTTGTGCGGCTGTACGGCTCCGTCACTCAATGCGGTGCTAGCCACTTAGCCAGC] [+] EMBL CF312512 [GAAGGAGTAGAAAAGAGACAAGAGAGTCGGAGCCGCAGCCAGCCAGTGCACTAGGGTCTAGGGCGACTCGCCGAGGTTGTTAACAGCGCATCCGGACCGGACTTGTTCTTCTTCCGCGGGCGGCGCAGCGGAGGCCTCAGGCTTGTGCGGCTGTACGGCTCCGTCACTCAATGCGGTGCTAGCCACTTAGCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13277#0 ------------------------------------------------------------ consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 TCCGGGGGCGGTGCAGGGTGCGGCCGCACGGCTCGGCGTCGTCAATGCGGGCGATGGTAG 60 consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 ------------------------------------------------------------ consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 CCTGGTAGGTTTGCACTCGTCTGGGGGGATTTGAGAGTCCTTGAGCAAGTGGATCCGTAG 120 consensus_13277#2 ---------------CTTGCATTTGTGGATATACCATTCCCTGAATATATGGTTATGAAC 45 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 ------------------------------------------------------------ consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 CTTTCGTTGGCCATCATCATCTGACAGTAAGAATCCAGAGGTGGGTGTGACAAGAAGATG 180 consensus_13277#2 TTATGGTT---CCTTAATGTTGAAAAAAATGTTTCTCAAGCT---TGTGAT--GACTTTG 97 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 ------------------------------------------------------------ consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 CTGAAGAAACTGCTATCAAAGCCTAAGAGCAAGAAGAAGGAGGCTGCCTCCTCTGCGCTC 240 consensus_13277#2 TTAATTAAG--GTTTAAAGAGTTGAGGGATGAATAATGTCCAGTTTTGAAGTTTAGGGAC 155 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 -------------------------------------------CTAGAATTGAAATTATT 17 consensus_13277#3 --------------------------------ATGAGCTGGGGCAAGAGTGAATCCCCTT 28 consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 CCCACTTTGGATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGTGCTTTCTT 300 consensus_13277#2 GA-ATTTTAGG----CTTTGATAGAGTTCAGGGACTTAAAATAATAAAATGTACTTTTCT 210 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TCTATTGATTTTCCT--TGAATTAT---CTCTTGGTACATTGTGTTT-----TACGCGTA 67 consensus_13277#3 CCCCCCTCTCACCCTCATGGCTCATGGGCGGTGAGCACCATGTGGTCATCAGTCCGTGTG 88 consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 CAGAAGAAGGTTTCTGCAGAAGTTGAAAAGGCTAAGGATTATACAAAAGCTAAGAACAAA 360 consensus_13277#2 C----------TT-------AGTT-AAATGACAAACAACTTCCTGTTTGTTGCA------ 246 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 GTTGGTTA-GTTGCTTATGCAGGTAGAGAAAAGAGAAGGGTTTATTAAAGTGTAGCTTTC 126 consensus_13277#3 GTCAACAACGACTTGTGTGCTGTTGTGGAAAACCAACTCAACTCGAGGTGGAGAAATCGC 148 consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 AGCGCTGCAATTCAGTGTCTAAAGAAAAAGAAGCTGTATGAAACACAAATTGAGCAGCTA 420 consensus_13277#2 ---GCTGCAATTCAATGTCTAAAGAAAAAGAAGTTGTATGAAACACAGATTGAGCAGCTA 303 consensus_13277#4 ------------CATGGACTCAAGGAGTAGAAACTCAACGAATC-TGACTCTAACCTCCA 47 consensus_13277#0 TAACTATATATCTTGTGCTGT----AGACTGTAGCAGTCCTCTTGCTAATTACGCGTGCG 182 consensus_13277#3 AGGGGCCATTTTTGAGGCTTTTTTGAGACTGTAGCAGTCCTCTTGCTAATTACGCGTGCG 208 consensus_13277#5 ---------------------------------------------------GAAGGAGTA 9 consensus_13277#1 GCAAATTTCCAATTGCGAGTTCATGATCAGATAATAATGCTTGAGAGCGCAAAGGCAACC 480 consensus_13277#2 GCAAACTTCCAATTACGGGTTCATGATCAGATAATAATGCTTGAGAGTGCAAAGGCAACC 363 consensus_13277#4 ------TTTCCTTTACTTTCCCCTCGACTCCTCTTGGTCTTTCACCCTACTGGAACGACC 101 consensus_13277#0 CAAGAGAGGGACGGGCGCCGGCGCTGCGCAGGAAATTT-TACATAACGCCCAAAAATGGA 241 consensus_13277#3 CAAGAGAGGGACGGGCGCCGGCGCTCCGCAGGAAATTT-TACATAACGCCCAAAAATGGA 267 consensus_13277#5 GAAAAGAGACAAGAGAGTCGGAGC--CGCAGCCAGCCAGTGCACTAGGGTCTAGGGCGAC 67 consensus_13277#1 ACAGATACCGTTGATGCTTTGCGCTCTGGATCATC--TGCTGTCAAAGCTATTCATCAGT 538 consensus_13277#2 ACAGATACTGTTGATGCTTTGCGCTCTGGATCATC--TGCTGTCAAAGCTATTCACCAGT 421 consensus_13277#4 ATACAGAT--TTAGCCATTAATCATCCACCTCTTCCTTCCTAACATAGGCCATCATCA-T 158 * * * * consensus_13277#0 TGA--GTGGCTGCCGACGCCATATATCACACACAAGTTGTATTTTTCTAAGCTTTTATTA 299 consensus_13277#3 TGA--GTGGCTGCCGACGCCATATATCACACACAAGTTGTATTTTTCTAAGCTTTTATTA 325 consensus_13277#5 TCGCCGAGGTTGTTAACAGCGCAT-CCGGACCGGACTTGT-TCTTCTTCCGCGGGCGGCG 125 consensus_13277#1 CAGTGAGTATTGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAAAATA 598 consensus_13277#2 CAGTGAGTATCGATGACATTGAAAATGCCATTGAAGAGGCAAATGAACACACAGAGAATA 481 consensus_13277#4 CTGACAGTAAGAATCCAGAGGTGGGTGTGAC--AAGAAGATGCTGAAGAAACTGCTATCA 216 * * * * * consensus_13277#0 TATCAAAATAGTAAAGTT---------------TTTGAACATATATGATCACGTAAAAGA 344 consensus_13277#3 TATCAAAATAGTAAAGTT---------------TTTGAACATATATGATCACGTAAAAGA 370 consensus_13277#5 CAGCGGAGGCCTCAGGCT---------------TGTGCGGCTGTACGGCTCCGTCACTCA 170 consensus_13277#1 TGAGGCAGATACAGGAGGCACTTGCAACACCAATTGGCGCTTCTGCTGATTTCGACGAGG 658 consensus_13277#2 TGAGGCAGATACAGGAGGCCCTTGCAACACCAATTGGCGCTTCTGCTGATTTTGACGAGG 541 consensus_13277#4 AAGCCTAAGAGCAAGAAG--------AAGGAGGCTGCCTCCTCTGCGCTCCCCACTTTGG 268 * * * consensus_13277#0 GCAATCGTCCATCAGTGCTTCCAGTTCCCCCAGGCATATGCTGCACTCCATCTCCGACGA 404 consensus_13277#3 GCAATCGTCCATCAGTGCTTC-AACCCTAAAAGGAAAAA--------------------- 408 consensus_13277#5 ATGCGGTGCTAGCCACTTAGCCAGC----------------------------------- 195 consensus_13277#1 ATGAACTAGAAGCAGAGCTGGAAGATCTGGAGGAGGAAGAGCTCGACCATGAGCTGCCTG 718 consensus_13277#2 ATGAGCTAGAAGCAGAGCTGGAAGATCTAGAGGAGGAAGAGCTCGAGAATGATCTGCCTG 601 consensus_13277#4 ATCGTCTCCATGAGACTCTAGAAATGCTGGAGAAGAAAGAGT------------------ 310 * consensus_13277#0 CTCATCCCGCCGCGCGGCGATGGTGCGCGTGGTCCGGCAGCCAGATCTTCGGATCAGGCG 464 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 AACCACCTCAGAGTACACGCATGGGACCATCAGCGAGAGTTACAACTTCATCTCAACCAG 778 consensus_13277#2 AACCACCTCAGAGGACAAGTATGGAACCTTCAGCGAGAGTTACGACTAC---TCAACCAG 658 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 GCGGCGCACCGGCATGTCGACGTCGGCGATCGGCGCAGCAGAGGAGGAGCACGCACACGG 524 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 CCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTAATCACAGTTTG 838 consensus_13277#2 CCAATGATTTGGCTGAACTGACCAAACTTCAAGCAGAGATGGCGCTTTGACCGCAGTTTG 718 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 CGTACAGGATGCTGCCGGCGAGGGCCCCTGTGAATAAGGAAAACCCGAACGCTTGCCAGA 584 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 GAGGGATTTGTTTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGGAAAT-AACAT 897 consensus_13277#2 GACGGAATTGTCTGTATTTTGCTGACATCCTGTTTGTGTAGTGTACTCGTTTTTTAACAT 778 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TGGGCAGCTCTTTCAAGAACAGCATCGCGCAACTATATCTTGATAGTATTTGTTTATTTT 644 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 GTTGTAAATTCAGTTTGTTGTAGAAAAAAACCCTTCCTTTTAT-------AATTTGTT-- 948 consensus_13277#2 GTTGTAAATTCAGTTTGCTGTAGAAAAAG-CCCTTCCTTTTATGCTAAAAAATGTGTTTC 837 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 CTGTTTTTCCAATTCCACTTGAATTGTGTTCTGCGCCGCCCATGCATTTATGCGTAATAA 704 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 TTCTTCGCTGTTAAAAAAAAA--------------------------------------- 858 consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TGTGTTGCAAGCATCAATCAGTTATATATGTTGCACCCTTTATATATATGCAGATCCTAA 764 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 AATAGTAGCATTCCGTTCAAAAAAAAAAATAGTAGCATCAGTGTATTTTAGGTATCTGTA 824 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 CGCACAATATATGGATCTCTTGTTAGCTCGGACTTGATTTTTAATCCTTTTAAGATGAGA 884 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TAAAAATATTGTTATGATCTGCATACATACAAGAAAGAAATGGATCAACTACGATATTAT 944 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TATTGCCTGTTGATTGGATCTTTAATTAATCACCGGATAAAAAAAAAAGATCGATCTGTG 1004 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 AGATGCTCTGCTTCCAGAGGCGCGACGAGGCCCTGTCCATGTATGAGTATGAATGTATGA 1064 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TGAGGAGGAGAAGCAAAAGGGTGGCCGTGGCTGCGGCGCAGGAGGACGGTCACGTGTCAG 1124 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 AATCGCATCCGGACCGGACTTGTTCTTCTTCCGCGGGCGGCGCAGCGGAGGCCTCAGGCT 1184 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 TGTGCGGCTTTACGGCTCCTTCACTCAATGCGGTGCTAGCCAGCCAGTAGCCAAGGTCAA 1244 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 GGCTATCGTCACCCGAGATTGAAGATCAAGTGAGTGTTACAAGAAGATGCTGAAGAAACT 1304 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 GCTATCAAAGCCCAAGAGCAAGAAGAAGAAGGAGGCTGCCTCCTCTGCCCTCCCCACTTT 1364 consensus_13277#3 ------------------------------------------------------------ consensus_13277#5 ------------------------------------------------------------ consensus_13277#1 ------------------------------------------------------------ consensus_13277#2 ------------------------------------------------------------ consensus_13277#4 ------------------------------------------------------------ consensus_13277#0 GGATAGGCTTCATGAGACTC 1384 consensus_13277#3 -------------------- consensus_13277#5 -------------------- consensus_13277#1 -------------------- consensus_13277#2 -------------------- consensus_13277#4 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||