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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 2161 fasta sequence
[CTCTACTGAAAGATGTACTGGTTTTGAGAGCACTGAATCTACACATTATCTGAAAAATACTTTGCAATCTTGGCAAACTAGAGTTATAGTTGTTCTCAACTTGCTTTCTTATTGGTAAAAAAGTTGACTTTTGCCATCTTTTGTGTTCTAATTCACTTTTTGTATCTGTATTTAATTTCTTGGACAGCAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCAGGCTGTGGAAGGTGGAGCTGTACTGCCCAGTGGTCGCCATGATCATGGAGCACCCGGCTCATCAGACGAAAGATGAGAAGCTGCAGTTCTCGCTGAACTACCAGCATCTGGAGGCCGTGATCCAGTTCATCTACAGAGTCACCTTCAGGGAGAACTGGATCGACGTCACCGTCAACGTCGACAACATAAGGTGCGACCTGATCCAGCTGGTGTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCCTGACAGTGAGCCGGTCGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGACTCTGAGAATGTCTGCTTCTGTTATGGAATTCAAAATTATGTTGGGCATTACCCGTAACCCTTGTGCAGGCGCAAACATATGGAGAGACTGAAGATTGGTCACTTGTAGTTGTAGTACCTATTTTTTTTTTTCGTTCTTTTTTTTTTTGGGTCGAAAACCAGGAGTTGTTTTACCTGTTATGAAGATTTCAGAGTTTTAGAATTCAAAAGTTCCTGACGTGTAAGTATTTGTCATGCCATTTGAAAATCTCTAGTTTGAAGTTTAACTCTTTCCCTTGGAAAGCTTCTGTAACTTTTGAACCAGAGTTTGGAGCTGTATATTGGGAGCTCTTGAGGTATGAACCAGACATTTACATGATATTCCAATGTTATAAAA]
[+] EMBL AK066676 [CTCTACTGAAAGATGTACTGGTTTTGAGAGCACTGAATCTACACATTATCTGAAAAATACTTTGCAATCTTGGCAAACTAGAGTTATAGTTGTTCTCAACTTGCTTTCTTATTGGTAAAAAAGTTGACTTTTGCCATCTTTTGTGTTCTAATTCACTTTTTGTATCTGTATTTAATTTCTTGGACAGCAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTC TCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCAGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCAGGCTGTGGAAGGTGGAGCTGTACTGCCCAGTGGTCGCCATGATCATGGAGCACCCGGCTCATCAGACGAAAGATGAGAAGCTGCAGTTCTCGCTGAACTACCAGCATCTGGAGGCCGTGATCCAGTTCATCTACAGAGTCACCTTCAGGGAGAACTGGATCGACGTCACCGTCAACGTCGACAACATAAGGTGCGACCTGATCCAGCTGGTGTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCCTGACAGTGAGCCGGTCGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTCTAATTTTTTTTAATGATTACTTAATCAAGACTCTGAGAATGTCTGCTTCTGTTATGGAATTCAAAATTAT ]
[+] EMBL CB664138 [ GTTTTGAGAGCACTGAATCTACACATTATCTGAAAAATACTTTGCAATCTTGGCAAACTAGAGTTATAGTTGTTCTCAACTTGCTTTCTTATTGGTAAAAAAGTTGACTTTTGCCATCTTTTGTGTTCTAATTCACTTTTTGTATCTGTATTTAATTTCTTGGACAGCAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAA AAGCTGATGCT ]
[+] EMBL CB661966 [ TGGTAAAAAAGTTGACTTTTGCCATCTTTTGTGTTCTAATTCACTTTTTGTATCTGTATTTAATTTCTTGGACAGCAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCANGCTGTGGAAGGT ]
[+] EMBL CB644095 [ CTTGGACAGCAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCAGGCTGTGGAAGGTGGAGCTGTACTGCCCAGTGGTCGCCATGATCATGGAGCACCCGGCTCATCAGACGAAAGATGAGAAGCT ]
[+] EMBL CB648427 [ GTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCAGGCTGTGGAAGGTGGAGCTGTACTGCCCAGTGGTCGCCATGATCATGGAGCACCCGGCTCATCAGACGAAAGATGAGAAGCTGCAGTTCTC ]
[+] EMBL AK119649 [ TGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCAGGCTGTGGAAGGTGGAGCTGTACTGCCCAGTGGTCGCCATGATCATGGAGCACCCGGCTCATCAGACGAAAGATGAGAAGCTGCAGTTCTCGCTGAACTACCAGCATCTGGAGGCCGTGATCCAGTTCATCTACAGAGTCACCTTCAGGGAGAACTGGATCGACGTCACCGTCAACGTCGACAACATAAGGTGCGACCTGATCCAGCTGGTGTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCCTGACAGTGAGCCGGTCGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGACTCTGAGAATGTCTGCTTCTGTTATGGAATTCAAAATTATGTTGGGCATTACCCGTAACCCTTGTGCAGGCGCAAACATATGGAGAGACTGAAGATTGGTCACTTGTAGTTGTAGTACCTATTTTTTTTTTTCGTTCTTTTTTTTTTTGGGTCGAAAACCAGGAGTTGTTTTACCTGTTATGAAGATTTCAGAGTTTTAGAATTCAAAAGTTCCTGACGTGTAAGTATTTGTCATGCCATTTGAAAATCTCTAGTTTGAAGTTTAACTCTTTCCCTTGGAAAGCTTCTGTAACTTTTGAACCAGAGTTTGGAGCTGTATATTGGGAGCTCTTGAGGTATGAACCAGACATTTACATGATATTCCAATGTTATAAAA]
[-] EMBL CB644096 [ ACAACATAAGGTGCGACCTGATCCAGCTGGTGTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCCTGACAGTGAGCCGGTCGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATGGGTTTAATTTTTTTTAATGATTACTTAATCAAaaaaaaaaa ]
[-] EMBL CB669694 [ GTGCGACCTGATCCAGCTGGTGTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCCTGACAGTGAGCCGGTCGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGACTCTGAGAATGTCTGC ]
[-] EMBL CB648428 [ GTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCCTGACAGTGAGCCGGTCGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGACTCTGAGAATGTCTGCTTCTGTTATGGAATTCAAAATTATGTTGGGCATTACCCGTA ]
consensusID : consensus_13284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence
[AGCCCTGAATCTACACATTATCTGAAAAATACTTTGCAATCTTGGCAAACTACACAATGATGGAGTTCATAAAGCTGGAACTCTTCTTCATCCATGGCTTCTGCCGCTGCTCCTGACATCTGGCACTGGACCACAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCATATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCACGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAACCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCATGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTG]
[+] EMBL CB669695 [AGCCCTGAATCTACACATTATCTGAAAAATACTTTGCAATCTTGGCAAACTACACAATGATGGAGTTCATAAAGCTGGAACTCTTCTTCATCCATGGCTTCTGCCGCTGCTCCTGACATCTGGCACTGGACCACAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCATATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCACGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGGTGCTGCGAAGAACCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCATGTGGCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTG]
[+] EMBL CB639739 [ GCACTGAATCT CACATTATCTGAAAAATACTTTGCAATCTTGGCAAACTAGACAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGTTGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTG ]
consensusID : consensus_13284#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GGGGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGAGGATATCCATGCAGTTGACGCCGGTGGTGCAGACGGACATCCTCTCCATGACAGTGAGCCGGTTGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGAAAAAAAAAAGA]
[-] EMBL CB661967 [GGGGAAGCAGGGCTACGGCTCCGACGAGAAGCACTTCCCGTCGAGGATATCCATGCAGTTGACGCCGGTGGTGCAGACGGACATCCTCTCCATGACAGTGAGCCGGTTGACGGACAACCCCGCCCAGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCTCAGCGCAGCACCGGCGACCATCGGCATCACCATGTCGGCGCACGAGACGGTGACGAGGACACTCCGGCCATGGAAGTTCGAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAGGGCAGGGAGGTGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAGCCGCGGTCATGGTTCAGGAACCGGTACACCAACCCGGGCAGGCCGTTCACCAGGGGCGGCGGCGTGATCTTCGCCGGCGATGAGTACGGCGAGAGCGTTTGCTGGAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAGGATATGGGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGTTGAGACCAGGAGGGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATCTGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGAAAAAAAAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13284#0 CTCTACTGAAAGATGTACTGGTTTTGAGAGCACTGAATCTACACATTATCTGAAAAATAC 60
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TTTGCAATCTTGGCAAACTAGAGTTATAGTTGTTCTCAACTTGCTTTCTTATTGGTAAAA 120
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 AAGTTGACTTTTGCCATCTTTTGTGTTCTAATTCACTTTTTGTATCTGTATTTAATTTCT 180
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TGGACAGCAATGATGGAGTTCATAGAGCTGGAGCTCTTCTTCATCCATGGCTTCTGCCGT 240
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TGCTCCTGACATCTGGCACTGGACCAGAAGCCTCCCCAACCCCAAGCACTGGAGGGGAAA 300
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 ATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAGTCTCTGAACCTCATCAT 360
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 CAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCCATCTGTGCTGAACACCA 420
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAATCTGTTAATGGCTCAGA 480
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTCAGGTATGGCCCTTACTC 540
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 CAACAAGATGTCACCCTTCAGGCTGCCAAATGTTCAGGTATCTGAAGATACAGGCAAAAT 600
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 CTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATCTACGAAGCTCCGTCCAC 660
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 CCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATACGCGGCGACATGTGGGG 720
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TGCTGCGAAGAAGCTGATGCTTGCCATGGGGTCAGACATGGAGGAGCAGTGGATGCGGTC 780
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 ACTGAACCTCGCCGTCACCAACTGGATCATAGAGACTCGCCGGTCAGGTGGCACGCCGGT 840
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 GTCGCCTTTCACGGTCTTCTCCTACGCTGTCTCGGCGATCAGGCTGTGGAAGGTGGAGCT 900
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 GTACTGCCCAGTGGTCGCCATGATCATGGAGCACCCGGCTCATCAGACGAAAGATGAGAA 960
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 GCTGCAGTTCTCGCTGAACTACCAGCATCTGGAGGCCGTGATCCAGTTCATCTACAGAGT 1020
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 CACCTTCAGGGAGAACTGGATCGACGTCACCGTCAACGTCGACAACATAAGGTGCGACCT 1080
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 GATCCAGCTGGTGTCGGAGACGCTGATGGCGAAGCAGGGCTACGGCTCCGACGAGAAGCA 1140
consensus_13284#2 ---------------------------GGGGAAGCAGGGCTACGGCTCCGACGAGAAGCA 33
consensus_13284#1 -----------------------------AGCCCTGAATCTACACATTATCTGAAAAATA 31
* **** * ** ** *
consensus_13284#0 CTTCCCG-TCGCGGATATCACTGCAGCTGACGCCGCTGGTGCAGACGGACATCCTCTCCC 1199
consensus_13284#2 CTTCCCG-TCGAGGATATCCATGCAGTTGACGCCGGTGGTGCAGACGGACATCCTCTCCA 92
consensus_13284#1 CTTTGCAATCTTGGCAAACTACACAA-TGATGGAGTTCATAAAGCTGGAACTCTTCTTCA 90
*** * ** ** * * ** *** * * * * ** *** ** *** *
consensus_13284#0 T-----------------------GACAGTGAGC--CGGTCGACGGACAACCCCG--CCC 1232
consensus_13284#2 T-----------------------GACAGTGAGC--CGGTTGACGGACAACCCCG--CCC 125
consensus_13284#1 TCCATGGCTTCTGCCGCTGCTCCTGACATCTGGCACTGGACCACAAGCCTCCCCAACCCC 150
* **** ** ** ** * **** ***
consensus_13284#0 AGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCT-CAGCGCAGCACCGGCGA-CCAT 1290
consensus_13284#2 AGGAGGTCGACACAGAGATGGGCCTCGACGCGACGCT-CAGCGCAGCACCGGCGA-CCAT 183
consensus_13284#1 AAGCACTGGAGGGGAAAATCCTACTATCTTCAAATCTGCAACTCTCCATCAACAAACCAG 210
* * * ** * ** ** * * ** ** * * ** * * * ***
consensus_13284#0 CGGCATCACCATGTCGGCGCACGAGACGGTGA--CGAGGACACTCCGGCCATGGAAGTTC 1348
consensus_13284#2 CGGCATCACCATGTCGGCGCACGAGACGGTGA--CGAGGACACTCCGGCCATGGAAGTTC 241
consensus_13284#1 TCTCTGAACCTCATCATCAGCTGGCACTCTGAAACCCAATCCTTCAATCTGTCTTACTCC 270
* *** ** * * ** *** * * ** * * * * *
consensus_13284#0 GAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAG 1408
consensus_13284#2 GAGCACTCGGTGCACGGCAACACGGCGGCGCTGAACTGGTTCCTGCACGGCGGCGCGGAG 301
consensus_13284#1 ATCTGTGCTGAACACCATGATCCAGTCTCACTCTGGAGCTCCCATTATTCCAGATTGAAA 330
* * *** * * * * ** * * ** * * * * *
consensus_13284#0 GGCAGGGAGG-----TGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAG---CCGC 1460
consensus_13284#2 GGCAGGGAGG-----TGTTCTCCAGCGAGCCGCACAAGCGGGAGCTGCTCCAG---CCGC 353
consensus_13284#1 TCTGTTAATGGCTCATATTTTGCCATCCATTTCTTCCACGATATCATCTGCGGGGTCCTC 390
* * * ** * * * ** * * ** * * ** *
consensus_13284#0 GGTCATGGTTCAGGAACCGGTA------CACCAACCCGG--GCAGGCCGTTCA-----CC 1507
consensus_13284#2 GGTCATGGTTCAGGAACCGGTA------CACCAACCCGG--GCAGGCCGTTCA-----CC 400
consensus_13284#1 AGGTATGGCCCTTACTCCAACAAGATGTCACCCTTCACGCTGCCAAATGTTCAGGTATCT 450
* **** * ** * **** * * ** ***** *
consensus_13284#0 AGGGGCGGCGGCGTGATCTTCG--CCGGCGATGAGTACGGCGAGAGC----GTTTGC-TG 1560
consensus_13284#2 AGGGGCGGCGGCGTGATCTTCG--CCGGCGATGAGTACGGCGAGAGC----GTTTGC-TG 453
consensus_13284#1 GAAGATACAGGCAAAATCTTCAACCTGGCAGCACTCACTCTTGCACTCATGGTCTGCATC 510
* *** ****** * *** ** * ** *** *
consensus_13284#0 GAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAG--GATA 1618
consensus_13284#2 GAGGATGCCCGCCGCGGCGGCGGGCAAGACGGTGGAGTGGGAGATGAAGGGGAG--GATA 511
consensus_13284#1 TACGAAGCTCCGTCCACCCTCCGACGAGACCTCATCGGCACGGTCAGTGCGCAGCTGATA 570
* ** ** * * * * * * **** * * * * ** ****
consensus_13284#0 TG-GGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGT--TGAGACCAG----GAG 1671
consensus_13284#2 TG-GGTGACGTACTGGCCAAACAAGAAGAGGACGCTGCATGT--TGAGACCAG----GAG 564
consensus_13284#1 CGCGGCGACATGTGGGGTGC-TGCGAAGAACCTGATGCTTGCCATGGGGTCAGACATGGA 629
* ** *** * ** ***** * *** ** ** * *** *
consensus_13284#0 GGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATC 1731
consensus_13284#2 GGTCGAGTTCAGAGAGCTACTGCGTCTCACCATCAGAGAGTAGACCAATTTGTCATCATC 624
consensus_13284#1 GGAGCAGTGGATGCGGTCACTGAACCTCGCCGTCACCAACTGGATCA--TAGAGACTCGC 687
** *** * * **** *** ** *** * * ** ** * * * *
consensus_13284#0 TGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGACTCTGA 1791
consensus_13284#2 TGGTTTCATATTTGAAAATTGTTTTAATTTTTTTTAATGATTACTTAATCAAGAAAAAAA 684
consensus_13284#1 CGGTCATGTG---GCACGCCGGTGTCGCCTTTCACGGTCTTCTCCTACGCTG-------- 736
*** * * * * * * *** * * * ** *
consensus_13284#0 GAATGTCTGCTTCTGTTATGGAATTCAAAATTATGTTGGGCATTACCCGTAACCCTTGTG 1851
consensus_13284#2 AAAGA------------------------------------------------------- 689
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 CAGGCGCAAACATATGGAGAGACTGAAGATTGGTCACTTGTAGTTGTAGTACCTATTTTT 1911
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TTTTTTCGTTCTTTTTTTTTTTGGGTCGAAAACCAGGAGTTGTTTTACCTGTTATGAAGA 1971
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TTTCAGAGTTTTAGAATTCAAAAGTTCCTGACGTGTAAGTATTTGTCATGCCATTTGAAA 2031
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 ATCTCTAGTTTGAAGTTTAACTCTTTCCCTTGGAAAGCTTCTGTAACTTTTGAACCAGAG 2091
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TTTGGAGCTGTATATTGGGAGCTCTTGAGGTATGAACCAGACATTTACATGATATTCCAA 2151
consensus_13284#2 ------------------------------------------------------------
consensus_13284#1 ------------------------------------------------------------
consensus_13284#0 TGTTATAAAA 2161
consensus_13284#2 ----------
consensus_13284#1 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||