cluster # 13288

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Oryza sativa
cluster # 13288 cluster # 13288 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13288#0 length = 1534 sequences # 10

consensus_13288#1 length = 775 sequences # 1
consensus_13288#2 length = 419 sequences # 1

consensusID : consensus_13288#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1534
fasta sequence

                              [GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAGGCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAGCCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT-GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC-TCCC-GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC-TTCA-GGTTGGAACA-TTCTGCGTCGCCATAGGAGCA-TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAACAAAAAAGA]

[+] EMBL AK100086             [GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAGGCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAGCCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACGT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAttt       ]
[+] EMBL CB685189             [                                                                                                                                               GGCCCCTTCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB685739             [                                                                                                                                                          GGGCATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA765983             [                                                                                                                                                                                                         caagGGGCGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGGTGTTGGAAAANTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTTCCCGGGANACTTGAAGTAAGCANAGTTGAGTTGCTTCTTTAA GGTTGGAACANTTCTGNGTCGNCATAGGAGCANTTAATTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB683356             [                                                                                                                                                                                                                                                                                                               cctcctGATA CAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB661320             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACGCCTAGGAATGTAAATAATTCGGTTTGGATCTCAaaaaaaaga                                                                                                                                                                                                                                                                      ]
[-] EMBL CB639278             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGTTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCAGGGTTGGAACA TTCTGCGTCGCCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB622474             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAACAAAAAAGA]
[-] EMBL CB622522             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAAAAAAAAAGA]
[-] EMBL CB660415             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAA                                                                                                   ]




>consensus_13288#0
GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAG
GCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAG
CCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCC
GCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCT
AATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTC
CGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCC
TTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATG
CATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCA
TTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTT
GAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGT
ATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTG
TTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGAT
CTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA
ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA
GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT
CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG
GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG
CTTCTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGC
ATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGA
ATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAG
ATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATC
TCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTC
CCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCT
GATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGT
GGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAA
TGTTACTGATTATCTTTGAAAATAACAAAAAAGA

consensusID : consensus_13288#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 775
fasta sequence

                              [GTGACCCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGTTTTTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTTCCTGGAGACAAACGCGTGGGCATTTTGGGCGACACCTGGTGGAATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCATGTACTCATCCCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAGTAATTCGGTTTTGATCTCATTTTGAAAGCTACAAACAAAAAGGGA]

[-] EMBL CB685740             [GTGACCCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGTTTTTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTTCCTGGAGACAAACGCGTGGGCATTTTGGGCGACACCTGGTGGAATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCATGTACTCATCCCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAGTAATTCGGTTTTGATCTCATTTTGAAAGCTACAAACAAAAAGGGA]




>consensus_13288#1
GTGACCCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATAC
AAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTC
TACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGG
TTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATC
CTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTG
ATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAA
TTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGA
GACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGA
GACTTGAAGTAAGCAGAGTTGAGTTGTTTTTTCAGGTTGGAACATTCTGCGTCGCCATAG
GAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTTCCTGGAGACAAACGCGT
GGGCATTTTGGGCGACACCTGGTGGAATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCA
TGTACTCATCCCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTA
GGAATGTAAGTAATTCGGTTTTGATCTCATTTTGAAAGCTACAAACAAAAAGGGA

consensusID : consensus_13288#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTTTGGGTNGCCATAGGCGTCACCTCCACCTCCCCCTCCTCCTCCACCGCCGCCGCCGCCGCCTCCTCCTCCTCATCCTTGGTCACGGCCCGCCCATCCTTCCCCTCCGCCGCCCGCAGCGC]

[-] EMBL CB660414             [CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTTTGGGTNGCCATAGGCGTCACCTCCACCTCCCCCTCCTCCTCCACCGCCGCCGCCGCCGCCTCCTCCTCCTCATCCTTGGTCACGGCCCGCCCATCCTTCCCCTCCGCCGCCCGCAGCGC]




>consensus_13288#2
CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTC
GACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAA
GAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCAT
GGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAAC
TTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTT
TGGGTNGCCATAGGCGTCACCTCCACCTCCCCCTCCTCCTCCACCGCCGCCGCCGCCGCC
TCCTCCTCCTCATCCTTGGTCACGGCCCGCCCATCCTTCCCCTCCGCCGCCCGCAGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13288#0      GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAG 60
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      GCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAG 120
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      CCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCC 180
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      GCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCT 240
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      AATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTC 300
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      CGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCC 360
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      TTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATG 420
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      CATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCA 480
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      TTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTT 540
consensus_13288#1      ----------------------------------GTGACCCAGCAATGCCATTTCAACTT 26
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      GAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGT 600
consensus_13288#1      GAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGT 86
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      ATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTG 660
consensus_13288#1      ATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTG 146
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      TTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGAT 720
consensus_13288#1      TTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGAT 206
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      CTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA 780
consensus_13288#1      CTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA 266
consensus_13288#2      ---------------------CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA 39
                                            ***************************************

consensus_13288#0      ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA 840
consensus_13288#1      ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA 326
consensus_13288#2      ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA 99
                       ************************************************************

consensus_13288#0      GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT 900
consensus_13288#1      GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT 386
consensus_13288#2      GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT 159
                       ************************************************************

consensus_13288#0      CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG 960
consensus_13288#1      CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG 446
consensus_13288#2      CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG 219
                       ************************************************************

consensus_13288#0      GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG 1020
consensus_13288#1      GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG 506
consensus_13288#2      GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG 279
                       ************************************************************

consensus_13288#0      CTTCTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGC 1080
consensus_13288#1      TTTTTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGC 566
consensus_13288#2      CTTCTTCAGGTTGGAACATTTTGGGTNGCCATAGG--CGTCACCTCCA----CCTCCCCC 333
                        ** **************** ** ** ********  * * *  * **      *    *

consensus_13288#0      ATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGA 1140
consensus_13288#1      ATGAACCTTAAATCGTTCCTGGAGACAAACGCGTGGGCATTTTGGGCGACACCTGGTGGA 626
consensus_13288#2      TCCTCCTCCACCGCCGCCGCCGCCGCCTCCTCCTCCTCATCCTTGGTCACGGCCCGCCCA 393
                            *   *   *   *   *   *   * * *   ***  * **  **  *  *   *

consensus_13288#0      ATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAG 1200
consensus_13288#1      ATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCATGTACTCATCCCTAAAGACTAGAAAG 686
consensus_13288#2      TCCTTCCCCTCCGCCGCCCGCAGCGC---------------------------------- 419
                           *       ** *      *                                     

consensus_13288#0      ATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATC 1260
consensus_13288#1      ATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAGTAATTCGGTTTTGATC 746
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      TCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTC 1320
consensus_13288#1      TCATTTTGAAAGCTACAAACAAAAAGGGA------------------------------- 775
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      CCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCT 1380
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      GATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGT 1440
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      GGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAA 1500
consensus_13288#1      ------------------------------------------------------------
consensus_13288#2      ------------------------------------------------------------
                                                                                   

consensus_13288#0      TGTTACTGATTATCTTTGAAAATAACAAAAAAGA 1534
consensus_13288#1      ----------------------------------
consensus_13288#2      ----------------------------------