These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1534 fasta sequence [GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAGGCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAGCCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT-GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC-TCCC-GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC-TTCA-GGTTGGAACA-TTCTGCGTCGCCATAGGAGCA-TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAACAAAAAAGA] [+] EMBL AK100086 [GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAGGCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAGCCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACGT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAttt ] [+] EMBL CB685189 [ GGCCCCTTCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAA ] [+] EMBL CB685739 [ GGGCATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAA ] [+] EMBL CA765983 [ caagGGGCGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGGTGTTGGAAAANTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTTCCCGGGANACTTGAAGTAAGCANAGTTGAGTTGCTTCTTTAA GGTTGGAACANTTCTGNGTCGNCATAGGAGCANTTAATTGC ] [+] EMBL CB683356 [ cctcctGATA CAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCA ] [-] EMBL CB661320 [ TATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACGCCTAGGAATGTAAATAATTCGGTTTGGATCTCAaaaaaaaga ] [-] EMBL CB639278 [ ATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGTTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCAGGGTTGGAACA TTCTGCGTCGCCATA ] [-] EMBL CB622474 [ CTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAACAAAAAAGA] [-] EMBL CB622522 [ CTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACAT GGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGTGGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAATGTTACTGATTATCTTTGAAAATAAAAAAAAAGA] [-] EMBL CB660415 [ TATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGC TCCC GGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTC TTCA GGTTGGAACA TTCTGCGTCGCCATAGGAGCA TTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATCTCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTCCCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCTGATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAA ] consensusID : consensus_13288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [GTGACCCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGTTTTTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTTCCTGGAGACAAACGCGTGGGCATTTTGGGCGACACCTGGTGGAATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCATGTACTCATCCCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAGTAATTCGGTTTTGATCTCATTTTGAAAGCTACAAACAAAAAGGGA] [-] EMBL CB685740 [GTGACCCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGTTTTTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTTCCTGGAGACAAACGCGTGGGCATTTTGGGCGACACCTGGTGGAATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCATGTACTCATCCCTAAAGACTAGAAAGATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAGTAATTCGGTTTTGATCTCATTTTGAAAGCTACAAACAAAAAGGGA] consensusID : consensus_13288#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTTTGGGTNGCCATAGGCGTCACCTCCACCTCCCCCTCCTCCTCCACCGCCGCCGCCGCCGCCTCCTCCTCCTCATCCTTGGTCACGGCCCGCCCATCCTTCCCCTCCGCCGCCCGCAGCGC] [-] EMBL CB660414 [CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTTTGGGTNGCCATAGGCGTCACCTCCACCTCCCCCTCCTCCTCCACCGCCGCCGCCGCCGCCTCCTCCTCCTCATCCTTGGTCACGGCCCGCCCATCCTTCCCCTCCGCCGCCCGCAGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13288#0 GCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAG 60 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 GCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAG 120 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 CCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCC 180 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 GCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCT 240 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 AATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTC 300 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 CGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCC 360 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 TTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATG 420 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 CATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCA 480 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 TTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTT 540 consensus_13288#1 ----------------------------------GTGACCCAGCAATGCCATTTCAACTT 26 consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 GAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGT 600 consensus_13288#1 GAGGTTGTCGAAGCTGCCCTGCTTTTTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGT 86 consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 ATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTG 660 consensus_13288#1 ATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTG 146 consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 TTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGAT 720 consensus_13288#1 TTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGAT 206 consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 CTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA 780 consensus_13288#1 CTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA 266 consensus_13288#2 ---------------------CTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATA 39 *************************************** consensus_13288#0 ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA 840 consensus_13288#1 ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA 326 consensus_13288#2 ATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTA 99 ************************************************************ consensus_13288#0 GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT 900 consensus_13288#1 GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT 386 consensus_13288#2 GAGAAGCAGATTGCTGAAGAAGAAGAGGAAGAAATTGAAATGTTGTTGGAAAATTATCTT 159 ************************************************************ consensus_13288#0 CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG 960 consensus_13288#1 CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG 446 consensus_13288#2 CAAAGATGTGAATCAATCCATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATG 219 ************************************************************ consensus_13288#0 GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG 1020 consensus_13288#1 GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG 506 consensus_13288#2 GAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTG 279 ************************************************************ consensus_13288#0 CTTCTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGC 1080 consensus_13288#1 TTTTTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGC 566 consensus_13288#2 CTTCTTCAGGTTGGAACATTTTGGGTNGCCATAGG--CGTCACCTCCA----CCTCCCCC 333 ** **************** ** ** ******** * * * * ** * * consensus_13288#0 ATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGA 1140 consensus_13288#1 ATGAACCTTAAATCGTTCCTGGAGACAAACGCGTGGGCATTTTGGGCGACACCTGGTGGA 626 consensus_13288#2 TCCTCCTCCACCGCCGCCGCCGCCGCCTCCTCCTCCTCATCCTTGGTCACGGCCCGCCCA 393 * * * * * * * * * *** * ** ** * * * consensus_13288#0 ATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAG 1200 consensus_13288#1 ATAGTAGTTGGAGCAGTGGTTGGATTTTTCATCATGTACTCATCCCTAAAGACTAGAAAG 686 consensus_13288#2 TCCTTCCCCTCCGCCGCCCGCAGCGC---------------------------------- 419 * ** * * consensus_13288#0 ATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAATAATTCGGTTTTGATC 1260 consensus_13288#1 ATATTGTAAAACTCTGTAGCATTCGGTACTCCTAGGAATGTAAGTAATTCGGTTTTGATC 746 consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 TCATTTTGAAAGCTATTGATGGAGGCACGTACAGATTCATATGAGATTGCTTTGATGCTC 1320 consensus_13288#1 TCATTTTGAAAGCTACAAACAAAAAGGGA------------------------------- 775 consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 CCACGAATGCTGTCGTGGGCGTCGGTTCTGAACTTTGGACCAAGCGTTCGCTGCACGCCT 1380 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 GATGAAGCTAGCAGCCTAGCACCAAGACCATAGTATTTCGCATCTCTTACATAAAGCCGT 1440 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 GGCGGTTTTCATGACTGCACTGGGTGAGAGTGCTGAACAGTGTAACTCTAGATTGATCAA 1500 consensus_13288#1 ------------------------------------------------------------ consensus_13288#2 ------------------------------------------------------------ consensus_13288#0 TGTTACTGATTATCTTTGAAAATAACAAAAAAGA 1534 consensus_13288#1 ---------------------------------- consensus_13288#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||