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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1237 fasta sequence
[CCGAGTTGCACGGCACCACCACCGCCTTCTTCCTTCACTCGACCCGACCGCCGTCTCGTCCGTCTCCCCCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC-AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA-CGTATTACTATTAA--TATCTACTTGCTGCTAAAAAACCGTACTAACGTGTGGCATTGCCTTACCGAAAAAAAAAAAAAAA]
[+] EMBL AK111872 [CCGAGTTGCACGGCACCACCACCGCCTTCTTCCTTCACTCGACCCGACCGCCGTCTCGTCCGTCTCCCCCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA CGTATTACTATTAA TATCTACTTGCTGC ]
[+] EMBL AK104132 [ CCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCTAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTAT ]
[+] EMBL CA753557 [ CTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAG ]
[+] EMBL AU064542 [ CCCAACCCGACCTCCTCACTCGCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCGAGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGTTCTCCATCGACTCCAAGGCCANCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACAACGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTACAAGAGGAGCATTGGGAGCTCTNCTAGTCTACGATATCACC ]
[+] EMBL AA749892 [ TCACT GCCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCGCAGC AGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTC GCAAGT CAGATCCT G CCG TTCG CCGCAACGAGTTC ]
[+] EMBL CK085128 [ GCACCCTCCTCATCGACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTGTCACGAGTGCATACTAC AGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGCGCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGAACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCA ]
[+] EMBL C97534 [ GCGATCTTGAAGACGAGCGGGCCGTGAGCACCGAGGATGCCAAGNAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTCTGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTCACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTNCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTNCCTCTTTTTNAGAATTTTCACGNGATCTTTCTNGACGTACATCCCT CTCAAA AGCTCnggg ]
[+] EMBL AU166141 [ TTCAAAATTCCCAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTNCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA CGTATTACTATTAA TATCTACTTGCTGCTAAAAAA ]
[+] EMBL BI808881 [ AGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAGGGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTTCCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGACCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACACCGTATTACTATTAA aaaaaaaa ]
[+] EMBL AU091578 [ GAATTTTCACGCGATCTTTCTGGACGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTTTGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTGGGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACA CGTATTACTATTAATTTTTTTTCTTGCTGCTATGACACCGTACTAACGTGTGGCATTGCCTTACCGAAAAAAAAAAAAAAA]
consensusID : consensus_13293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[GATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTATGACACCGTAAAAAAA]
[+] EMBL AU063657 [GATTCAGCTGTATTTGTGTGCCTCTTTTTGAGAATTTTCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGTTGGACTATTGGTTGTTTCGGTGATCAGGTGGACGGAATAGCCATGTATGCCGATTGTTTTACATTTCTTAAATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTATGACACCGTAAAAAAA]
consensusID : consensus_13293#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[GTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGNCNNAGATCNTCGCCCGNTTCGCCCGCAACGAGTTCTCCATCGACTNCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGNACNNNNGNCATCGACCACAAGTCCGTCANAGCCCAGATCTGGGACACCGNCGGCCAGGAGAGGTATAGAGCT]
[+] EMBL AU068550 [GTGTTCAAGGTGGTGCTGATCGGGGACTCCGCCGTCGGCAAGNCNNAGATCNTCGCCCGNTTCGCCCGCAACGAGTTCTCCATCGACTNCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGNACNNNNGNCATCGACCACAAGTCCGTCANAGCCCAGATCTGGGACACCGNCGGCCAGGAGAGGTATAGAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13293#0 CCGAGTTGCACGGCACCACCACCGCCTTCTTCCTTCACTCGACCCGACCGCCGTCTCGTC 60
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 CGTCTCCCCCGCTTCCTCCGCCTCCAAAACCCCCCCATCCCAACCCGACCTCCTCACTCG 120
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 CCCTCCCCTCGCGCTTCGCTTCGCTCCGATCCGACCGCCGCCGCCGCCGCCGCCACAGCG 180
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 AGAAGAGAGAGAGGGAGATGGCGGGCGGGGAGAAGGTGGACTACGTGTTCAAGGTGGTGC 240
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 TGATCGGGGACTCCGCCGTCGGCAAGTCCCAGATCCTCGCCCGCTTCGCCCGCAACGAGT 300
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 TCTCCATCGACTCCAAGGCCACCATCGGCGTCGAGTTCCAGACCCGCACCCTCCTCATCG 360
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 ACCACAAGTCCGTCAAGGCCCAGATCTGGGACACCGCCGGCCAGGAGAGGTATAGAGCTG 420
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 TCACGAGTGCATACTACAGAGGAGCATTGGGAGCTCTCCTAGTCTACGATATCACCAAGC 480
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 GCCAGAGCTTTGATCACATCCCTCGCTGGCTGGAGGAGCTCCGTGGCCATGCGGACAAGA 540
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 ACATAGTCATCATGCTGGTTGGCAACAAGAGCGATCTTGAAGACGAGCGGGCCGTGAGCA 600
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 CCGAGGATGCCAAGGAGTTTGCTGAGAAGGAGAACCTCTTCTTCCTGGAGACCTCCGCTC 660
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 TGCAGGCCACCAACGTCGAGAACGCCTTCCAGACCGTCCTGTCAGAGATATTCAAAATTC 720
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 ACAGCAAGAAGAACATGGCAGCGGACCCAAAAGCAAACGGCGCTGCCCCATCGCTAGCAG 780
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 GGAAGAAGGTCGTCGTCCCGGGCCCAGCGCAGGAGATCCCCAAGAGCAAGTGCTGCAGTT 840
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 CCATGTGATCTTACTCTACTCAGATTCAGCTGTATTTGTG-TGCCTCTTTTTGAGAATTT 899
consensus_13293#1 ----------------------GATTCAGCTGTATTTGTG-TGCCTCTTTTTGAGAATTT 37
consensus_13293#2 -------------------------------GTGTTCAAGGTGGTGCTGATCGGGGACTC 29
** ** * ** ** * * * * *
consensus_13293#0 TCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGT- 958
consensus_13293#1 TCACGCGATCTTTCTGGATGTACATCCCTGCTCAAATAGCTCTAGGCTGCGAGTATTGT- 96
consensus_13293#2 ---CGCCGTCGG-CAAGNCNNAGATCNTCGCCCGNTTCGCCC---GCAACGAGTTCTCCA 82
*** ** * * * *** ** * * ** * ** ***** *
consensus_13293#0 TGGACTATT-GGTTGTTTCGGTGATCAGGTGGACGGGATAGCTTAGAATTTGTGACATTT 1017
consensus_13293#1 TGGACTATT-GGTTGTTTCGGTGATCAGGTGGACGG------------------------ 131
consensus_13293#2 TCGACTNCAAGGCCACCATCGGCGTCGAGTTC-CAG------------------------ 117
* **** ** * ** ** * *
consensus_13293#0 TGTCACTTCTCTCAGCTGGAGTAGGGTGCGAGCAGAGGAGCTCTATTTTTCATAGGAGTG 1077
consensus_13293#1 ------------------------------------------------------------
consensus_13293#2 ------------------------------------------------------------
consensus_13293#0 GGTTAATTTGTGGGGGTTAATTACCAATAGCCATGTATGCCGATTGTTTTACATTTCTTA 1137
consensus_13293#1 -------------------------AATAGCCATGTATGCCGATTGTTTTACATTTCTTA 166
consensus_13293#2 --------------------------ACCCGNACNNNNGNCATCGACCACAAGTCCGTCA 151
* * * * * * * *
consensus_13293#0 AATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTAAAAAACCGT 1197
consensus_13293#1 AATCCTTTATGTATTGTTACACGTATTACTATTAATATCTACTTGCTGCTATGACACCGT 226
consensus_13293#2 NAGCCCAGATCTGGGACACCGNCGGCCAGGAGAGGTATAGAGCT---------------- 195
* ** ** * * * * *** * *
consensus_13293#0 ACTAACGTGTGGCATTGCCTTACCGAAAAAAAAAAAAAAA 1237
consensus_13293#1 AAAAAAA--------------------------------- 233
consensus_13293#2 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||