These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 563 fasta sequence [GCTTATTGGAGAGAAAAAAGGGTCGAAGCGCAA-CAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC-ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG-CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC-TGCCTCCGCCTC-TGAT-GGGCCAGCACC-TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT-ATTTGTT-ATTTTC-ATGTGTTGTTTTCGCATTTT-ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC-TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAAAAGACCAAAAA] [+] EMBL C73252 [GCTTATTGGAGAGAAAAAAGGGTCGAAGCGCAA NAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGAC ] [+] EMBL AU094174 [ CTTATTGGAGAGAAAAAAGGGTCGAAGCGCAAGCAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCATTCAGTAAGACCAAAAA] [+] EMBL C72687 [ CTTATTGGAGAGAAAAAAGGGTCGAAGCGCAA CAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCCTTGCCTCCGCCTCTTGATGGGGCCAGCACCTTGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTTAATTTTC ATGTGTTGTTTTCGCATTTT ATATNACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTAATGCCTGC CATT ] [+] EMBL AU165520 [ TTATTGGAGAGAAAAAAGGGTCGAAGCGCAAGCAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTG TAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCGACGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCNCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATAaaaaaaaa ] [+] EMBL AK121194 [ TATTGGAGAGAAAAAAGGGTCGAAGCGCAAGCAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGCT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATG ] [+] EMBL AU064015 [ GAGAGAAAAAAGGGTCGAAGCGCAA GAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCANC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGNATATAATTTGTN ATTTTCAATGTGTTGTTTTTGGATTTT ATATAAC ] [+] EMBL AU065102 [ GAGAGAAAAAAGGGTCGAAGCGCAA NNAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGAATGGTCGTTCCCTCCGACTCCGACTCCGCNCCCGCCCCCGCCCC TGCTTCCGCCTC TTAN GGG CAACACCTTGCGCAATCC ] [+] EMBL C73236 [ GTCGAAGCGCAA NAAATCGATCAGCAACACAAGATGAAGAAGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TAAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTN ATTTTC ATGTGTTGTTTTCGCATTTTAATATAACCATGCGCGCTCTAGNTGTACATGCAGCC ] [+] EMBL C73211 [ AGATGCGGATGGCAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TNAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTAATTCCTTCCTTTTAATTACGGTAAATG AACANTTTCTTCCATGCATACATGNTGGTc ] [+] EMBL AU182495 [ ACGCCAAGAACGCCCNATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAA ] [+] EMBL AU172657 [ CGCCAAGAACGCCC ATGCCGGTGGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCG CGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGACTCCGCCCCCGCCCCCGCCCC TGCCTCCGCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCANACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAAAAaaa ] [+] EMBL AU094953 [ GCCTC TGAT GGGCCAGCACC TGCGCCATCCCCCAACAATTAATTCAACATCGACCTAGCATATATATATACGTATAT ATTTGTT ATTTTC ATGTGTTGTTTTCGCATTTT ATATAACCATGCGCGCTCTAGTTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAAACACTTTC TCCATGCATACATGGTTGTTCTTATTTTATTTATTATAAGGATATATATATATATATATATGCGCAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||