These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1006 fasta sequence [TTATAGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC-GGCGGCGGGTACGACTACGAGGACGTGAGC-GGAGGCGGCGGCGGCGC-CGCAGCGAAG--TCG-TACAGC-TTCAACGGGCCAAGCGCCCGCGA-TGACCCGGAGGCGAAGCGGCGGCGG-CGGGTGGCGGCGTACAACGTGTTCGCG-ACGCAG-GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC-GACATCCGCTACGGTGGCCTCTGAACTGAT-GAACCTACCCTG-CATATATG-CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGA-GGGGGAGGAATTTGAAGAACTTGCAGGGGTTGGATCCTGCTTAATTTG-AAATTAAGTTGGGTTCACCTAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCGGGCCCATTCCGCCTAATGAGGTGGATTCCCGCCCTCCTGCGCGGGTTAAAACGTGTGGCTGGAAACCCTGGGTTCCAATTATGGCTGAAGCAATCCCTTTGCGTTGGTATGCGAAGAGCCCCCACCCCTCCACGGTGACCCTAAGGAGTGACCCCCTGACGGATTACCCGGGGGGGGGTCCCGGAACGCAC] [+] EMBL BE040726 [TTATAGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGCGGCGGCGGCGGCGC CGCAGCGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGAGGCGAAGCGGCGGCGG CGGGTGGCGGCGTACAACGTGTTCGCG ACGCAG GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC GACATCCGCTACGGTGGCCTCTGAACTGAT GAACCTACCCTG CATATATG CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGTCTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAATTGCCTTATGAAGTTATGGTCAACTGTCAGATCGGTGCTATGTGGTTTCACTTTTTTTTTTTGGTCTTATGAGTTGAGAAAGAGGAGGGGGGAGGGA TTGAAGAACTTGCAGGGGTTGGATCCTGCTTAATTTG AAATTAAGTTGGGTTCACCTAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGGGGGGCCCGGGCCCATTCCGCCTAATGAGGTGGATTCCCGCCCTCCTGCGCGGGTTAAAACGTGTGGCTGGAAACCCTGGGTTCCAATTATGGCTGAAGCAATCCCTTTGCGTTGGTATGCGAAGAGCCCCCACCCCTCCACGGTGACCCTAAGGAGTGACCCCCTGACGGATTACCCGGGGGGGGGTCCCGGAACGCAC] [+] EMBL OSS15047A [ AGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGGCGGCGGGTACGACTACNAGGACGTNAGCGGGAGGCGGCGGCGGCGCNCGAA AAGT TCG TACAGC TTCAACGGGCCAAGCGCCCGGAA TGACCCGGAGGCGAAGGGGCGGCGG CGGGTGGCGGCGTACAACGTNTTCGCG ACGC ] [+] EMBL AK071855 [ CACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGAGGCGGCGGCGGCGC CGCCGCGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGAGGCGAAGCGGCGGCGG CGGGTGGCGGCGTACAACGTGTTCGCG ACGCAG GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC GACATCCGCTACGGTGGCCTCTGAACTGAT GAACCTACCCTG CATATATG CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGA GGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATT ] [+] EMBL OSC29352 [ TCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTNAGC GGAGGCGGCGGCGGNGC CGNA AAGGTTCGTTACAGCTTTCAACGGGCCAAGNGNCCGCGATTGACCCGGAGGCGAAG GGCGGCGG CGGGTTGCGGCGTA ] [+] EMBL OSC29332 [ TCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTNAGC GGAGGCGGCGGCGGCGC GGAAANG T TCGTTACAGC TTCAACGGG ] [+] EMBL AU076286 [ CTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGAGGCGGCGGCGGC CGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGA GCGAAG GGCGGCGGNCGGGTGGCGGCGTACAACGTGTTCGCGAACGCAGNGGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAATTGGATCAAGTCCAGGTTCTCCGGACATCCGCTACGTTGNCCTCTGAACTGATNGAACTTACCCTGNCATATATGCCATATAnta ] [+] EMBL CB685021 [ TAGCCGTTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGC GGCGGCGGGTACGACTACGAGGACGTGAGC GGAGGCGGCGGCGGCGC CGCCGCGAAG TCG TACAGC TTCAACGGGCCAAGCGCCCGCGA TGACCCGGAGGCGAAGCGGCGGCGG CGGGTGGCGGCGTACAACGTGTTCGCG ACGCAG GGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCC GACATCCGCTACGGTGGCCTCTGAACTGAT GAACCTACCCTG CATATATG CATATATACATATATATGATAATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGA GGGGGAGGAATTTGAAGAACTTGCAGGGGT ] consensusID : consensus_13299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 676 fasta sequence [ACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGAT-CAAGTCCAA-GTTCT-AAAACATCCGC-TA-CGGTGG-CCTCTGAACTGA-TGAACCTACCCTGCATA-TATG-CA-TA-TA-TACATATATATGA-TAATATATCT-ATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAAGCCATGTCCTCTGTTTCTAAAAAAAAAAAAA] [-] EMBL CF334142 [ACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTCAAGTCCACCGTCCGGAGCAGCTTCAAGTGGAT CAAGTCCAA GTTCT AAAACATCCGC TA CGGTGG CCTCTGAACTGA TGAACCTACCCTGCATA TATG CA TA TA TACATATATATGA TAATATATCT ATCTATGTATGTATACTGCTACATATATGATACAGA ] [+] EMBL CF334141 [ ATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTCAAGTCCACCGT ] [+] EMBL AU090615 [ CACCGTCCGGAGCAGCTTCAAGTGGATNCAAGTCCAAGGTTCTNCCGACATCCGCTTACCTGTGG CCTCTGAACNGA TGAACCTACCCTGCATA TATG CA TA TA TACATATATATGA TAATATATCTAATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAAGCCATGTCCTCTGTTTCTAAAAAAAAAAAAA] [+] EMBL AU076287 [ GGTGGCCCNCTGAACTGATTGAACCTACCCTGCATATTATGCCATTATTATTACATATATATGATTAATATATCT ATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATAGCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGTGAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCTATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTTGAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAAGCCAaa ] consensusID : consensus_13299#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [AGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGNCCTCACCGGGGGCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGNCNGGCGGCCGAANGTTCGGTAACAAGCTTTCAACGGGCCAAGCGCCCGCGANTGACCCGGAGCGAAGNGCGGCNGCGGGTGGCGGCGTACAACGTGTTCGCGACGAGGGGAGGCTCA] [+] EMBL C27954 [AGCTCAGCTAAGCTCCATTACTACCCAGCTTCTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGNCCTCACCGGGGGCAAATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAGCACTCGGCGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGCGNCNGGCGGCCGAANGTTCGGTAACAAGCTTTCAACGGGCCAAGCGCCCGCGANTGACCCGGAGCGAAGNGCGGCNGCGGGTGGCGGCGTACAACGTGTTCGCGACGAGGGGAGGCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13299#0 TTATAGCACTGCCTCTCCTCCAAGCTAGCAGCTCAGCTAAGCTCCATTACTACCCAGCTT 60 consensus_13299#1 ------------------------------------------------ACTACCCAGCTT 12 consensus_13299#2 -----------------------------AGCTCAGCTAAGCTCCATTACTACCCAGCTT 31 ************ consensus_13299#0 CTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAA 120 consensus_13299#1 CTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGACCTCACCGGAATCAA 72 consensus_13299#2 CTCCTCATCCCTCTCAAGATCAAGAACTCATCAAGAAGCCTGCGNCCTCACCGGGGGCAA 91 ******************************************** ********* *** consensus_13299#0 ATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAG 180 consensus_13299#1 ATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAG 132 consensus_13299#2 ATCGTCAGTGGCGGCGTGGTCGCTGTGACGATGGAGAAGTGCAGGTCGGTGCCGCACGAG 151 ************************************************************ consensus_13299#0 CACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGC 240 consensus_13299#1 CACTCGGCGGCGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGC 192 consensus_13299#2 CACTCGGCG-CGTACTACGGCTGCGGCGGCGGGTACGACTACGAGGACGTGAGCGGAGGC 210 ********* ************************************************** consensus_13299#0 GGCGGCGGCGCCGCAGCGAAGTCGTACAGCTTCAACGGGCCAAGCGCCCGCGATGACCCG 300 consensus_13299#1 GGCG-------------------------------------------------------- 196 consensus_13299#2 GNCNGGC----------------------------------------------------- 217 * * consensus_13299#0 GAGGCGAAGCGGCGGCGGCGGGTGGCGGCGTACAACGTGTTCGCGACGCAGGGGAGGCTC 360 consensus_13299#1 ------------------------------TACAACGTGTTCGCGACGCAGGGGAGGCTC 226 consensus_13299#2 ------------------------------GGCCGAANGTTCGGTA-ACAAGCTTTCAAC 246 * ***** * ** * * consensus_13299#0 AAGTCCACCGTCCG-GAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTCCGACATCCGCTA 419 consensus_13299#1 AAGTCCACCGTCCG-GAGCAGCTTCAAGTGGATCAAGTCCAAGTTCTAAAACATCCGCTA 285 consensus_13299#2 GGGCCAAGCGCCCGCGANTGACCCGGAGCGAAGNGCGGCNGCGGGTGGCGGCGTACAACG 306 * * * ** *** ** * ** * * * * * * * * consensus_13299#0 CGGTGGCCTCTGAACTGATGAACCTACCCTGCATATATGCATATATACATATATATGATA 479 consensus_13299#1 CGGTGGCCTCTGAACTGATGAACCTACCCTGCATATATGCATATATACATATATATGATA 345 consensus_13299#2 TGTTCGCGAC-GAGGGGAGGCTCA------------------------------------ 329 * * ** * ** ** * * consensus_13299#0 ATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATA 539 consensus_13299#1 ATATATCTATCTATGTATGTATACTGCTACATATATGATACAGACTTGCATGCATGCATA 405 consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 GCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGT 599 consensus_13299#1 GCTAAATTAAGTTGAAGCTGATATGTGCATGTTTGAGGAGCTATGATGAACTGTGTGTGT 465 consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 GAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCT 659 consensus_13299#1 GAGTGATCTACTGATCTTGAGTTGCCTTATGAAGTTATGGTCAACTGCCAGATCGGTGCT 525 consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 ATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTT 719 consensus_13299#1 ATGTGTTTTCACTTTTTTTTTTGGGTCTTATGAGTTGAGAAAGAAGAGGGGGAGGAATTT 585 consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 GAAGAACTTGCAGGGGTTGGATCCTGCTTAATTTG-AAATTAAGTTGGGTTCACCTAAAA 778 consensus_13299#1 GAAGAACTTGCAGTGGTTGTATCCTGCTTAATTTGCAAATTAAGTTGTATCAACTATCAA 645 consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 AAAAAAAA----------AAAAAAAAAAAAACCTCGGGGGGGGCCCGGGCCCATTCCGCC 828 consensus_13299#1 GCCATGTCCTCTGTTTCTAAAAAAAAAAAAA----------------------------- 676 consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 TAATGAGGTGGATTCCCGCCCTCCTGCGCGGGTTAAAACGTGTGGCTGGAAACCCTGGGT 888 consensus_13299#1 ------------------------------------------------------------ consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 TCCAATTATGGCTGAAGCAATCCCTTTGCGTTGGTATGCGAAGAGCCCCCACCCCTCCAC 948 consensus_13299#1 ------------------------------------------------------------ consensus_13299#2 ------------------------------------------------------------ consensus_13299#0 GGTGACCCTAAGGAGTGACCCCCTGACGGATTACCCGGGGGGGGGTCCCGGAACGCAC 1006 consensus_13299#1 ---------------------------------------------------------- consensus_13299#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||