cluster # 13300

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13300 cluster # 13300 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13300#0 length = 629 sequences # 10

consensus_13300#1 length = 221 sequences # 1
consensus_13300#2 length = 209 sequences # 1

consensusID : consensus_13300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 629
fasta sequence

                              [AACCTGAACCCAGCGTCAATCCGCAAGCAAGGAAAGCCCAAGAAGGGCAAGAGAGGTTTAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT-CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC-TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC-TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG-AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCATCACAACTTTGCAACATATTATGCAAAAAAAAAAA]

[+] EMBL OSC29922             [AACCTGAACCCAGCGTCAATCCGCAAGCAAGGAAAGCCCAAGAAGGGCAAGAGAGGTTTAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCNAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTC                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU093223             [   CTGAACCCAGCGTCAATCCGCAAGCAAGGAAAGCCCAAGAAGGNCAAGAGAGGTTTAGAGCCCCGTCCAAA TCCAAACCAGCCATGGCGACGGCGGNTGGCGGCGCGCGGCGGGCCNTCGCGGGG TGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCATCACAACTTTGCAACATATTATGCAAAAAAAAAAA]
[+] EMBL AU164484             [                CAATCCGCAAGCAAGGAAAGCCCAAGAAGGGCAAGAGAGGTTTAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCT                                                                                             ]
[+] EMBL AU164485             [                 AATCCGCAAGCAAGGAAAGCCCAAGAAGGGCAAGAGAGGTTTAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAaaaa                                            ]
[+] EMBL CF326490             [                                                        TTTAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCC GGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCATCACAACTTTGCAA                     ]
[+] EMBL AU101553             [                                                          TAGAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATAGGTTGATGCCGCTG                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB679742             [                                                             AGCCCCCTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCATCACAACTTTGCAACATATTATGCAtttacct   ]
[+] EMBL C74258               [                                                                                      CATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACANCGCCACTTGCGTCGGCTTTGCTCACCTCCATGCTCNGGCTTAAG CCGGATCTTTGGGGTTGGCTCTCANAAGGGTTTTCAANAACTCTATAACAGGAGTGGTGTTTTGGTCAACACACAAGAAAATTTTTCTGTTAGCn                                                                                                                                                                                           ]
[+] EMBL AK062424             [                                                                                       ATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCCCTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCT CCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGT                                                    ]
[+] EMBL AU101554             [                                                                                                                                           CTTCCTCTTCCAGGGCCTTCTCCCCAGCCGGCGCCGGCTGCGGCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGCCCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTGCACAGCGCCAC TGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATC TTGGGGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCACACAAG AAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAaaa                                             ]




>consensus_13300#0
AACCTGAACCCAGCGTCAATCCGCAAGCAAGGAAAGCCCAAGAAGGGCAAGAGAGGTTTA
GAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCC
CTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCTCCCAGCCGGCGCCGGCTGCG
GCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGC
CCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTG
CACAGCGCCACTGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATCTTGG
GGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGGTCACCAC
ACAAGAAACTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCAATAACATTAGTTACAAGAC
TTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGC
TTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCATCACAA
CTTTGCAACATATTATGCAAAAAAAAAAA

consensusID : consensus_13300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [NGGTGTTTTGGGTCCCCNCAAAAAGAAAATTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCNAAAACNATTAGTTACAAGACTTGTGGACTANAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACNTATNATGGCCTCATGTGCCANATNATTGTCCAAGCGATCATATTCCAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182757             [NGGTGTTTTGGGTCCCCNCAAAAAGAAAATTTTTCTGTTAGCCTTTCCCCCAGCAGGTTCCNAAAACNATTAGTTACAAGACTTGTGGACTANAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTTCTCTGCTTAAAACNTATNATGGCCTCATGTGCCANATNATTGTCCAAGCGATCATATTCCAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13300#1
NGGTGTTTTGGGTCCCCNCAAAAAGAAAATTTTTCTGTTAGCCTTTCCCCCAGCAGGTTC
CNAAAACNATTAGTTACAAGACTTGTGGACTANAATACCCGGGATTTTTGCTGATGGAAT
CTGTACTAAATTTTTTCTCTGCTTAAAACNTATNATGGCCTCATGTGCCANATNATTGTC
CAAGCGATCATATTCCAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13300#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [CCTGCCATGGCTCCGGGGCTTTAAAGCCCCGGGATTCCTTGGGGTTGGCTCTCAGGAAAGGGTGTTTCAACCACCCTCCTATACCAGGATTGGTGTTTTTTGGGTCACCACACAAGAAAACCTTTTCTGGTAGCCTGGTCCCCCAGCAAGGTTCCATCACACTAGTTACAAGACTTGTGGACTATAATACCCGGGATTGTTTGCTGATG]

[+] EMBL BI808064             [CCTGCCATGGCTCCGGGGCTTTAAAGCCCCGGGATTCCTTGGGGTTGGCTCTCAGGAAAGGGTGTTTCAACCACCCTCCTATACCAGGATTGGTGTTTTTTGGGTCACCACACAAGAAAACCTTTTCTGGTAGCCTGGTCCCCCAGCAAGGTTCCATCACACTAGTTACAAGACTTGTGGACTATAATACCCGGGATTGTTTGCTGATG]




>consensus_13300#2
CCTGCCATGGCTCCGGGGCTTTAAAGCCCCGGGATTCCTTGGGGTTGGCTCTCAGGAAAG
GGTGTTTCAACCACCCTCCTATACCAGGATTGGTGTTTTTTGGGTCACCACACAAGAAAA
CCTTTTCTGGTAGCCTGGTCCCCCAGCAAGGTTCCATCACACTAGTTACAAGACTTGTGG
ACTATAATACCCGGGATTGTTTGCTGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13300#0      AACCTGAACCCAGCGTCAATCCGCAAGCAAGGAAAGCCCAAGAAGGGCAAGAGAGGTTTA 60
consensus_13300#1      ------------------------------------------------------------
consensus_13300#2      ------------------------------------------------------------
                                                                                   

consensus_13300#0      GAGCCCCGTCCAAACTCCAAACCAGCCATGGCGACGGCGGCTGGCGGCGCGCGGCGGGCC 120
consensus_13300#1      ------------------------------------------------------------
consensus_13300#2      ------------------------------------------------------------
                                                                                   

consensus_13300#0      CTCGCGGGGCTGCGCTCGGCTTCCTCTTCCAGGGCCTTCTCCCAGCCGGCGCCGGCTGCG 180
consensus_13300#1      ------------------------------------------------------------
consensus_13300#2      ------------------------------------------------------------
                                                                                   

consensus_13300#0      GCGGCGGCTCGTTCCCCTGAGCTCGCGGCCTTCTCTCTGCCTCGCTCCACTCGCCGGCGC 240
consensus_13300#1      ------------------------------------------------------------
consensus_13300#2      ------------------------------------------------------------
                                                                                   

consensus_13300#0      CCCGCGATCTCGAGGGTCCCGGTGGAGGCGCTCGGCGGCGCGCATGGGTTGATGCCGCTG 300
consensus_13300#1      ------------------------------------------------------------
consensus_13300#2      ------------------------------------------------------------
                                                                                   

consensus_13300#0      CACAGCGCCACTGCGTCGGCTTTGCTCACCTCCATGCTCGGGCTTAAGCCCGGATCTTGG 360
consensus_13300#1      ------------------------------------------------------------
consensus_13300#2      ------------------------------------------------------------
                                                                                   

consensus_13300#0      GGTTGGCTCTCAGAAGGGTTTGCAACACCTCTATAACAGGAGTGGTGTTTTGG-TCACCA 419
consensus_13300#1      ------------------------------------------NGGTGTTTTGGGTCCCCN 18
consensus_13300#2      -------------------------------------CCTGCCATGGCTCCGGGGCTTTA 23
                                                                     * *  **  *    

consensus_13300#0      CACAAG--AAACTTTTCTG--TTAGCCTTTCCCCCAGCAGGTTCCAATAACA-TTAGTTA 474
consensus_13300#1      CAAAAAGAAAATTTTTCTG--TTAGCCTTTCCCCCAGCAGGTTCCNAAAACNATTAGTTA 76
consensus_13300#2      AAGCCCCGGGATTCCTTGGGGTTGGCTCTCAGGAAAGGGTGTTTCAACCACCCTCCTATA 83
                        *        * *  *  *  ** **  *      **   *** * *  **  *    **

consensus_13300#0      CAAGACTTGTGGACTATAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTT 534
consensus_13300#1      CAAGACTTGTGGACTANAATACCCGGGATTTTTGCTGATGGAATCTGTACTAAATTTTTT 136
consensus_13300#2      CCAGGATTG------GTGTTTTTTGGGTCACCACACAAGAAAACCTTTTCTGGTAGCCTG 137
                       * **  ***          *    ***          *   ** ** * **       * 

consensus_13300#0      CTCTGCTTAAAACTTATGATGGCCTCATGTGCCAGATGATTGTCCAAGCGATCATATTCA 594
consensus_13300#1      CTCTGCTTAAAACNTATNATGGCCTCATGTGCCANATNATTGTCCAAGCGATCATATTC- 195
consensus_13300#2      GTCCCCCAGCAAGGTTCCATCACACTAGTTACAAGACT----TGTGGACTATAATACCCG 193
                        **  *    **  *   **  *   *  * * * *      *     * ** ***  * 

consensus_13300#0      TCACAACTTTGCAACATATTATGCAAAAAAAAAAA 629
consensus_13300#1      ---CAA------AAAAAAAAAAAAAAAAAAAAAAA 221
consensus_13300#2      GGATTGTTTGCTGATG------------------- 209
                                    *