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Oryza sativa
cluster # 13308 cluster # 13308       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13308#0 length = 600 sequences # 10  
consensus_13308#1 length = 466 sequences # 1  
consensus_13308#2 length = 410 sequences # 1  

consensusID : consensus_13308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 600
fasta sequence
                              [ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA-CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC-AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA-TCCCCATTCCCAGCTGC-TAGGCTCGATCT-CCCGCCGCCGCCGGCCATGATGCGTACGT-GGCATATATACGCGT-GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]

[+] EMBL AK062529             [ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCG                                       ]
[+] EMBL AU066167             [  ATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATGGCGGCCTNCGGNATTCCCCATTCCCAACTTCTTAGGnt                                                                                                                                                                                                                                                                 ]
[+] EMBL AU066346             [  ATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTAA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGAAAGA                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU095292             [             TTCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTA CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAAGGCGTGAG TTGAA TAAT ATTATCCAGTACGCGt                                                                                                                                              ]
[+] EMBL AU095295             [              TCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTA CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGGA TCCCCATTCCCAGCTGC TAGGCTCGATCTCCCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGTGGGTGTGTACGTGCGCTTGAAGAAAA GGCGT ANTTTG ATTAATAATTATCCA TACGCG                                                                                                                                               ]
[+] EMBL C74648               [              TCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCAAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATNGCCGCCTGNGG A TCCCCAT                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU101533             [              TCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCAGCCGCCGGCCATGATGCGTACGTGGGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACG                                                                                                                                                 ]
[+] EMBL AU101534             [                                                                                                                                                           cCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGNC CCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]
[+] EMBL AU031210             [                                                                                                                                                                                                                                               cGCCTCTGCCNAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCNTCCCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCNT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]
[+] EMBL AU031205             [                                                                                                                                                                                                                                                                                                                                   CA TCCCCATTCCCAGCTGC TAGGNTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCANTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA]


>consensus_13308#0 ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAA TGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAG CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGACCCGATCTTCTA CGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTG CCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACG CAAGACCATCGCCGCCTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGC CGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAA AGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTG CCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTA TGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA



consensusID : consensus_13308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence
                              [CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT]

[+] EMBL AK063117             [CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT]


>consensus_13308#1 CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTC GAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGG GCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTG CTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGC GTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCC CAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACA TATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACAT ATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT



consensusID : consensus_13308#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA]

[+] EMBL AU161979             [TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA]


>consensus_13308#2 TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAG TCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAA GACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGG CATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAAT AATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGA AGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13308#0      ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAA 60
consensus_13308#2      ------------------------------------------------------------
consensus_13308#1      ----------------------------CGATCACATTCGATCACATTCGGCTAGTAACC 32
                                                                                   

consensus_13308#0      TGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAG 120
consensus_13308#2      ------------------------------------------------------------
consensus_13308#1      AAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAG 92
                                                                                   

consensus_13308#0      CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA-CCCGATCTTCT 179
consensus_13308#2      -------------------TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCT 41
consensus_13308#1      ATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCT 152
                                          ****** * ** *** *** * **** *  ***********

consensus_13308#0      ACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGT 239
consensus_13308#2      ACGG-ACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGT 100
consensus_13308#1      TCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGC------AGGGGT 206
                        *** ******** ** * ************ * * *    *******      ******

consensus_13308#0      GCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCAC 299
consensus_13308#2      GCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCAC 160
consensus_13308#1      GCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCAC 266
                       ** ************************************** ****** ***********

consensus_13308#0      GCAAGACCATCGCCGCCTGCGGCATCCCCATTCCCAGCTGC---TAGGCTCGATCTCC-- 354
consensus_13308#2      GCAAGACCATCGCCG--TGCGGCATCCCCATTCCCAGCTGC---TAGGCTCGATCTCC-- 213
consensus_13308#1      GCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGC 326
                       ******  *******  ************ ****** ****   *******  ** **  

consensus_13308#0      ----CGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTAC-GTGC 409
consensus_13308#2      ----CGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTAC-GTGC 268
consensus_13308#1      CGTTCACCGGTGCGGGCCATGATGTGTG-GCAACATATATAAATATATGGTGTACTGCGT 385
                           * ***  ** ********** **  *   ********    *   ****** * * 

consensus_13308#0      GCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGA 469
consensus_13308#2      GCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGA 328
consensus_13308#1      GCTTGAATAAAATAAAG------------GACAAT------GTGTGGAAACATATATAAA 427
                       ******* ****    *             * ***      **  *  *   *  **  *

consensus_13308#0      TCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGT 529
consensus_13308#2      TCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGT 388
consensus_13308#1      TATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT--------------------- 466
                       *  *** *** *  * * ***     ** * ***  **                      

consensus_13308#0      TAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAA 589
consensus_13308#2      TAATTGGAGTAAAAAAAAAAAA-------------------------------------- 410
consensus_13308#1      ------------------------------------------------------------
                                                                                   

consensus_13308#0      AAAAAAAAAAA 600
consensus_13308#2      -----------
consensus_13308#1      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)