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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1920 fasta sequence
[AAACTGATCGGGTGGTGCGGCCTCTCTCGCCTTTGATTTACCCTTTCGCGCACCAAACACCAAACCCTCGCCGCCGCCGGCGCCGCCATGCGGATCCCCACGGAGACGGAGACGGAGACGGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGGGCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAACCTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCACGTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCCGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGGGACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCATCTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCCCAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAGAGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAAGGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACATCTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCATATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTTGATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGGAGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAACCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCCCGTAATGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAACCCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCAACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGTTGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGTCCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTGTACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGAGCAAGTTCCCAACACTCCCCTCTCGTTTTCCACGCGCACGCTTTTTAAACTGCTAAACAATATGTTTTTTTAAAAAAAAGTTTCTATACGAAAGTTGTTTTTTAAAAAAATCATATTGATCTATTTTTGGAAAAAAATAGCTAAAATACTTAATTAATCACACGCTAATAGATTACTCCGTTTTCCGTGCGCACTGTGCATGTTCCCATCCTTCCCTAGGATGTGAGCTCCTGCGTCTGCGTGCTACAGTAAGTTATAGGCAAAATTGGTTCGATGCTATATAACCAATTTTGTCAATAATAAAAAGGCTAAAAGTTTATGCC]
[+] EMBL AK073316 [AAACTGATCGGGTGGTGCGGCCTCTCTCGCCTTTGATTTACCCTTTCGCGCACCAAACACCAAACCCTCGCCGCCGCCGGCGCCGCCATGCGGATCCCCACGGAGACGGAGACGGAGACGGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGGGCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAACCTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCACGTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCCGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGGGACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCATCTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCCCAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAGAGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAAGGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACATCTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCATATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTTGATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGGAGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAACCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCCCGTAATGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAACCCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCAACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGTTGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGTCCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTGTACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGA ]
[+] EMBL AK121275 [ AACTGATCGGGTGGTGCGGCCTCTCTCGCCTTTGATTTACCCTTTCGCGCACCAAACACCAAACCCTCGCCGCCGCCGGCGCCGCCATGCGGATCCCCACGGAGACGGAGACGGAGACGGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGGGCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAACCTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCACGTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCCGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGGGACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCATCTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCCCAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAGAGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAAGGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACATCTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCATATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTTGATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGGAGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAACCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCACGTAATGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAACCCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCAACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGTTGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGTCCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTGTACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACAAACCATGAAAAGGAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTACCAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGAGCAAGTTCCCAACACTCCCCTCTCGTTTTCCACGCGCACGCTTTTTAAACTGCTAAACAATATGTTTTTTTAAAAAAAAGTTTCTATACGAAAGTTGTTTTTTAAAAAAATCATATTGATCTATTTTTGGAAAAAAATAGCTAAAATACTTAATTAATCACACGCTAATAGATTACTCCGTTTTCCGTGCGCACTGTGCATGTTCCCATCCTTCCCTAGGATGTGAGCTCCTGCGTCTGCGTGCTACAGTAAGTTATAGGCAAAATTGGTTCGATGCTATATAACCAATTTTGTCAATAATAAAAAGGCTAAAAGTTTATGCC]
consensusID : consensus_13313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1846 fasta sequence
[TTCGTCTCGCCTTTGTTTTCCCCTTCGCGCACCAAACACCAAACACCAAACCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGGGACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGACCGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACGGAGATTCCCGGGCGGCCGCCGAAGCGATCCTCCTTAACCCTATCGTTGGACGACGCGGGCGCCTCCAATCCAGCCTCAACCTGGGCGATCCTGAATCGGTACGGCGCCCGGAGGGATTCCTTCCGCGGCGACGACCGCGACCGCACCACGTCGGCGGTCTCCTACACCTCCGGCGGCGACCAGATCTCCGTCTCCTTCGAGCTCGTGAAGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAGGGGCCCCGCCCGTCGGCGGGAACCACATCCTACCCATACGTCATCGCCGCGCACGACAACGTCGTCCTGTTCCAGATCATCTCCCCCGACAAGTACGCTCGCCCTTCCGCCATCGACTACTTCGTCTACAATGCCAACAGCAGCAGCAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTACTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCTGTCCTGCAGCAACAATTCTCCTTCGTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCAATCTTCCGAAACCAACATCTACCTCTTTGCTTCTGGCTCCGATGACTGGAGAGTCTTCAGGAATGTGCCGATCCGCCATGGCGACGGCCTCGCTCACCTGTGCTGGTGGACAACTGATGCAGTGTTGTCGTACCACAATCGCTACATGATCTGGGTGGACTACTTGGTAGCAGGGATGATCGTCGCCAAAGTGGCACATCCAGGAAGGGTTGACCCACCGGAGCCTGTTCTATGGTACGTGCCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGCGAGGATGCCCTCAAGCCTCCCGTAGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATGTTAACCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCTGTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCAACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAGAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAAGATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGATTATGGATGGATTGTATGCTATATTATTTTGTCTCGCATGTCCATATTATTTTTATATTTTTGTTGCTGT]
[+] EMBL AK101747 [TTCGTCTCGCCTTTGTTTTCCCCTTCGCGCACCAAACACCAAACACCAAACCCTCGCCGCCGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGGGACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGACCGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACGGAGATTCCCGGGCGGCCGCCGAAGCGATCCTCCTTAACCCTATCGTTGGACGACGCGGGCGCCTCCAATCCAGCCTCAACCTGGGCGATCCTGAATCGGTACGGCGCCCGGAGGGATTCCTTCCGCGGCGACGACCGCGACCGCACCACGTCGGCGGTCTCCTACACCTCCGGCGGCGACCAGATCTCCGTCTCCTTCGAGCTCGTGAAGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAGGGGCCCCGCCCGTCGGCGGGAACCACATCCTACCCATACGTCATCGCCGCGCACGACAACGTCGTCCTGTTCCAGATCATCTCCCCCGACAAGTACGCTCGCCCTTCCGCCATCGACTACTTCGTCTACAATGCCAACAGCAGCAGTAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTACTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCTGTCCTGCAGCAACAATTCTCCTTCGTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCAATCTTCCGAAACCAACATCTACCTCTTTGCTTCTGGCTCCGATGACTGGAGAGTCTTCAGGAATGTGCCGATCCGCCATGGCGACGGCCTCGCTCACCTGTGCTGGTGGACAACTGATGCAGTGTTGTCGTACCACAATCGCTACATGATCTGGGTGGACTACTTGGTAGCAGGGATGATCGTCGCCAAAGTGGCACATCCAGGAAGGGTTGACCCACCGGAGCCTGTTCTATGGTACGTGCCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGCGAGGATGCCCTCAAGCCTCCCGTAGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATGTTAACCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCTGTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCAACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAGAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAAGATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGATTATGGATGGATTGTATGCTATATTATTTTGTCTCGCATGTCCATATTATTTTTATATTTTTGTTGCTGT]
[+] EMBL CB678483 [ ACCCTCCCCGCCGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGGGACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGACCGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACGGAGATTCCCGGGCGGCCGCCGAAGCGATCCTCCTTAACCCTATCGTTGGACGACGCGGGCGCCTCCAATCCAGCCTCAACCTGGGCGATCCTGAATCGGTACGGCGCCCGGAGGGATTCCTTCCGCGGCGACGACCGCGACCGCACCACGTCGGCGGTCTCCTACACCTCCGGCGGCGACCAGATCTCCGTCTCCTTCGAGCTCGTGAAGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAGGGGCCCCGCCCGTCGGCGGGAACCACATCCTACCCATACGTCATCGCCGCGCACGACAACGTCGTCCTGTTCCAGATCATCTCCCCCGACAAGTACGCTCGCCCTTCCGCCATCGACTACTTCGTCTACAATGCCAACAGCAGCAGCAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTACTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCTGTCCTGCAGCAACAATTCTCCTTCCTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCAATCTTCCGAAACCAACATCTAC ]
[+] EMBL CB661469 [ GCCGCCGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGGGACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGACCGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACGGAGATTCCCGGGCGGCCGCCGAAGCGATCCTCCTTAACCCTATCGTTGGACGACGCGGGCGCCTCCAATCCAGCCTCAACCTGGGCGATCCTGAATCGGTACGGCGCCCGGAGGGATTCCTTCCGCGGCGACGACCGCGACCGCACCACGTCGGCGGTCTCCTACACCTCCGGCGGCGACCAGATCTCCGTCTCCTTCGAGCTCGTGAAGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAGGGGCCCCGCCCGTCGGCGGGAACCACATCCTACCCATACGTCATCGCCGCGCACGACAACGTCGTCCTGTTCCAGATCATCTCCCCCGACAAGTACGCTCGCCCTTCCGCCATCGACTACTTCGTCTACAATGCCAACAGCAGCAGCAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTACTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCTGTCCTGCAGCAACAATTCTCCTTCGTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCAATCTTCCGAAA CAACATCTACCTCTTTGCTTCTGGCTCCGATGACTGGAGAGTCTTCAGGAATGTGCCGATC ]
[+] EMBL CB639446 [ GCCGCCGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGGGACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGACCGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACTGATATTCCCGGGCGGTCGCCTAAGCGATCCTC ]
[+] EMBL AU068829 [ ACTACTTCGTCTACAATGCCAACAGCAGCAGCAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTACTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCTGTCCTGCAGCAACAATTCTCCTTCGTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCAATCTTCCGAAACCAACATCTACCTCTTTGCTTCTGGCTCCGATGACTGGAGAGTCTTCAGGAATGTGCCGATCCGCCATGGCGACGGCCTCGCTCACCTGTGCTGGTGGACAACTGATGCAGTGTTGTCGTACCACAATCGCTACATGATCTGGGTGGACTACTTGGTAGCAGGGATGATCGTCGCCAAAGTG ]
consensusID : consensus_13313#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 807 fasta sequence
[CCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGCGAGGATGCCCTCAAGCCTCCCGTAGTGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATGTTAACCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCTGTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCAACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAA-GATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGATTATGGATGGATTGTATGCTATATTATTTTGTCTCGCAAAAAAAAGAAAA]
[-] EMBL CB661470 [CCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGCGAGGATGCCCTCAAGCCTCCCGTAGTGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATGTTAACCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCTGTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCAACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAA GATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGATTATGGATGGATTGTATGCTATATTATTTTGTCTCGCAAAAAAAAGA ]
[-] EMBL CB678484 [ TCGTCAATGTTAACCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCTGTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCAACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTTCTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGGGAAATGCCATCTTACCTGTCTAGAAAAACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAA GATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAACCAGGAAGGGGGATGGATTGTATGCTATATTATTTTGT ]
[+] EMBL CA999963 [ ATGCTGACCAACTTCGGGACCTCGATTCTGAGACCTGCCTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAA GATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGACTATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGATTATGGATGGATTGTATGCTATATTATTTTGTCTAAAAAAAAAAAAAAAA]
[+] EMBL OS0668A [ CTTCCAAATATCCAACCTGAATTCCCCGTTGTTGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGACCCCAATGCCACAACGT GATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTGTACCGGATATTCCAACAAAGGAAGCCCTTCTACTGCCAGAAGGATGTCTGAGGGGCTNTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAAAACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTCTTACCAGTTTGAANGATTGGATGCATCAAAACGACCAGGNTGTGAGCTCCTGCATGTTAGGCTAAATTATAGATG ]
consensusID : consensus_13313#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[AATCGTCTTACCCGTTTGAAGATTGGATGCATCAAANCGACNNGGATGTGAGCTCNTGCATNTTNGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTNGTTGGCAGNCTATGACACCTCGTNGTTGTGTTAAATTATGTATTTTTGCTNGTNTAATCTAAAACAGGNTTATGGNTGGATAAAAAAAAAAAAANAAAAAAAAAAAA]
[+] EMBL AU090547 [AATCGTCTTACCCGTTTGAAGATTGGATGCATCAAANCGACNNGGATGTGAGCTCNTGCATNTTNGGCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTNGTTGGCAGNCTATGACACCTCGTNGTTGTGTTAAATTATGTATTTTTGCTNGTNTAATCTAAAACAGGNTTATGGNTGGATAAAAAAAAAAAAANAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 TTCGTCTCGCCTTTGTTTTCCCCTTCGCGCACCAAACACCAAACACCAAACCCTCGCCGC 60
consensus_13313#0 ------------------------------------------------------------
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CGCCGCCGCCGCCGCCGCCGCCATGCGGATCCCCACGACGGAGACGGAGACGGGGACGGG 120
consensus_13313#0 -AAACTGATCGGGTGGTGCGGCCTCTCTCGCCTTTGATTTACCCTTTCGCGCACCAAACA 59
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GACACGCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCGGGCCGTACACCGGAC 180
consensus_13313#0 CCAAACCCTCGCCGCCGCCGGCGCCGCCATGCGGATCCCCACGGAGACGGAGACGGAGAC 119
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CGACGCATCCCGTCGCGGACCAACGCCGACCAAGGAAACGGAGATTCCCGGGCGGCCGCC 240
consensus_13313#0 GGGGACGGGGGCACGGATTCCCAGCCACAGGCGGCGCAAGGGATCGTCCGACGGTTCGCG 179
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GAAGCGATCCTCCTTAACCCTATCGTTGGACGACGCGGGCGCCTCCAATCCAGCCTCAAC 300
consensus_13313#0 GGCCGTACACCGGCGCAAACCAACGCCGACCAAGGAGACGGAGATTCCCGGCGGCCACGG 239
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CTGGGCGATCCTGAATCGGTACGGCGCCCGGAGGGATTCCTTCCGCGGCGACGACCGCGA 360
consensus_13313#0 GCGGCCGAAGCGGTCCTCCTCAGCCCTGTCGTTGGACGGCGCCGGCGACTCCAACCCAAC 299
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CCGCACCACGTCGGCGGTCTCCTACACCTCCGGCGGCGACCAGATCTCCGTCTCCTTCGA 420
consensus_13313#0 CTGGGTGATCCTGAATCGGGTCGGTGCCCGGAGGGATTCCTTCCGCGGCGACCGCACCAC 359
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GCTCGTGAAGCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAGGGGCCCCGCCC 480
consensus_13313#0 GTCGGTGGCCTCCCGCACCTCCGGCGGCAAGGAGATCTCCGTCTCGTTCGAGCTCGCGCC 419
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GTCGGCGGGAACCACATCCTACCCATACGTCATCGCCGCGCACGACAACGTCGTCCTGTT 540
consensus_13313#0 GCCGCCGGAGACCTCCCTCCTCACCCTCGACTGGCCGCAAGGGCCCCGCCCGTCGGAGGG 479
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CCAGATCATCTCCCCCGACAAGTACGCTCGCCCTTCCGCCATCGACTACTTCGTCTACAA 600
consensus_13313#0 GACCACATCCTACCCTTACGTCATCGCGGCGCACGGCAACGTCGTGCTGCTCGAGATCAT 539
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 TGCCAACAGCAGCAGCAGCAGCAACCACCACCCCTCCTTGACGCGGCTGCCCGTCTCCTA 660
consensus_13313#0 CTCCACCGCCAAGTGCCCTCGCCCCATCGACATCGACTACTTCGTCTACAAGGCCAAGCC 599
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CTGGAGGAGGAGAGACACCCTTCGCCCGCGCATCATGAGCAGGGAAGGCACATGTATTCT 720
consensus_13313#0 CAACGGGGAACCCTCCTTGACGCGGCTGCCCGTTTGCTACTGGAAGGGGGCTTCGGGCAG 659
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GTCCTGCAGCAACAATTCTCCTTCGTTCGTTGTGGCTGAGCTCGAGAGAAGATCATGCCA 780
consensus_13313#0 AGACAATCCTCGGCCACGCATCATGAGTAGGGTGGCCATGGGTGTCCTGTCCTGCAGCAA 719
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 ATCTTCCGAAACCAACATCTACCTCTTTGCTTCTGGCTCCGATGACTGGAGAGTCTTCAG 840
consensus_13313#0 GGATTCGTTCGTTGTGGCCGAGATGGAGAGAAGGTCATACCAACCTTCTGCAGCTAACAT 779
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GAATGTGCCGATCCGCCATGGCGACGGCCTCGCTCACCTGTGCTGGTGGACAACTGATGC 900
consensus_13313#0 CTACATGTTTTTCTCCGGCTCCGACGGCTGGAGAGTCTTCAGGGATGTGCGGATTGACCA 839
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 AGTGTTGTCGTACCACAATCGCTACATGATCTGGGTGGACTACTTGGTAGCAGGGATGAT 960
consensus_13313#0 TATCAATGGTGCCGGCTGGTGGTCAACTGATGCAGTGTTATCCTACCGCCGTCGCTACTT 899
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CGTCGCCAAAGTGGCACATCCAGGAAGGGTTGACCCACCGGAGCCTGTTCTATGGTACGT 1020
consensus_13313#0 GATCTGGGTGGACTACTTGAGAGGGATGATTGTTGCCAAATTGGCACATCCAGGAGGAGG 959
consensus_13313#2 -CCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGCGAGGATG 59
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GCCGCTTCCTGTCGATCCAGTTGATGGGAACCCTTATGACATTGACCGTGGGCGAGGATG 1080
consensus_13313#0 AGACCCACAGGAGCCTGCTCTATGGTATGTACCGCTTCCGGTCGATCCGGTTATGGGGAA 1019
consensus_13313#2 CCCTCAAGCCTCCCGTAGTGTGTGTGCCACCCACCATGGCATCAAGTTCGTCAATGTTAA 119
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CCCTCAAGCCTCCCGTAGTGTGT--GCCACCCACCATGGCATCAAGTTCGTCAATGTTAA 1138
consensus_13313#0 CCCTTATGACAGTGAGCGTGGGCGAGGATGCCCTGAAGCTTCCCGTAATGTGTGTGCCAC 1079
consensus_13313#2 CCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCT 179
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CCAACATGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCATCACCCT 1198
consensus_13313#0 CCACCATGGCATCAAGTTCGTCAATATCATCAACCAATGTGGTGGCAGTTTTAGCATAAC 1139
consensus_13313#2 GTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCA 239
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 GTGGTCGTGGCGCGAGGAGGATCAAACATGGGGAGAAGATGCAACATTGGATGCTGACCA 1258
consensus_13313#0 CCTGTGGTCGTGGTGCGAGGACGGAACATGGAGAGAAGATGCGACACTGGATGCTGCCCA 1199
consensus_13313#2 ACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGT 299
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 ACTTCGGGACCTCGATTCTGAGAACCGCCTTCCAAATATCCAACCTGAATTCCCCGTTGT 1318
consensus_13313#0 ACTTTGGGACCTCGATTGTGAAAACCGCCTTCCAAATGTCCAACCAGAATTCCCTATTGT 1259
consensus_13313#2 TGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGA 359
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 TGACATGGAAAACCCTTACGCCGTTTGCTTCTTGTTGAACGAGCGCTACCACACTGCTGA 1378
consensus_13313#0 TGACATGGAAAACCCTTACACCGTTTGCTTCTTGTTGAACGAGGGCAACTACATTGT--- 1316
consensus_13313#2 CCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTG 419
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 CCCCAATGCCACAACGTGGATGATCAAGGTGCACATGAAGAAGAAGGTTCTACTAGATTG 1438
consensus_13313#0 CCCTGAAGCCACAACATGGATGATCAAGGTCCACATGAAGAAGAAGATTCTACTAGGTTG 1376
consensus_13313#2 TACCGGATATTCCAACAAAGGAAGCCCTTCT---------------------ACTGCCAG 458
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 TACCGGATATTCCAACAAAGGAAGCCCTTCT---------------------ACTGCCAG 1477
consensus_13313#0 TACTAGTTATTCTAAAAATGGAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAG 1436
consensus_13313#2 AAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAA 518
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 AAGGATGTCTGAGGGGCTCTCCTTCATCTCCAGCGAAATGCCATCTTACCTGTCTAGAAA 1537
consensus_13313#0 AAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATGCCATATTACCTGTCTGGACA 1496
consensus_13313#2 AACCATCAAAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTC 578
consensus_13313#3 -----------------------------------------------------AATCGTC 7
consensus_13313#1 AACCATCAGAAGGCAGGAGGTTGATAAGCTAGGAATATGACAGGAGATTCAGGAATCGTC 1597
consensus_13313#0 AACCATGAAAAG----GAAGTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTC 1552
*** ***
consensus_13313#2 TTACCAGTTTGAAGATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGG 638
consensus_13313#3 TTACCCGTTTGAAGATTGGATGCATCAAANCGACNNGGATGTGAGCTCNTGCATNTTNGG 67
consensus_13313#1 TTACCAGTTTGAAGATTGGATGCATCAAAACGACCAGGATGTGAGCTCCTGCATGTTAGG 1657
consensus_13313#0 TTACCAGTTTGAAGATTGGATCCATCAAA-CACTGTGTTTGCAAGAGCAAGTTCCCAACA 1611
***** *************** ******* * * ** ** * *
consensus_13313#2 CTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGAC 698
consensus_13313#3 CTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTNGTTGGCAGNC 127
consensus_13313#1 CTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGTAGTTGGCAGAC 1717
consensus_13313#0 CTCCCCTCTCGTTTTCCACGCGCACGCTTTTTAAACTGCTAAACAATATGTTT------T 1665
** * * * * * * * ** * *** * ** * **
consensus_13313#2 TATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGAT 758
consensus_13313#3 TATGACACCTCGTNGTTGTGTTAAATTATGTATTTTTGCTNGTNTAATCTAAAACAGGNT 187
consensus_13313#1 TATGACACCTCGTAGTTGTGTTAAATTATGTATTTTTGCTCGTATAATCTAAAACAGGAT 1777
consensus_13313#0 TTTAAAAAAAAGTTTCTATACGAAAGT-TGTTTTTTAAAAAAATCATATTGATCTATTTT 1724
* * * * ** * * *** * *** **** * * * * *
consensus_13313#2 TATGGATGGATTGTATGCTATATTATTTTGTCTCGCAAAAAAAAGAAAA----------- 807
consensus_13313#3 TATGGNTGGATAAAAAAAAAAAA-----------ANAAAAAAAAAAAA------------ 224
consensus_13313#1 TATGGATGGATTGTATGCTATATTATTTTGTCTCGCATGTCCATATTATTTTTATATTTT 1837
consensus_13313#0 TGGAAAAAAATAGCTAAAATACTTAATTAATCACACGCTAATAGATTACTCCGTTTTCCG 1784
* ** * *
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 TGTTGCTGT--------------------------------------------------- 1846
consensus_13313#0 TGCGCACTGTGCATGTTCCCATCCTTCCCTAGGATGTGAGCTCCTGCGTCTGCGTGCTAC 1844
consensus_13313#2 ------------------------------------------------------------
consensus_13313#3 ------------------------------------------------------------
consensus_13313#1 ------------------------------------------------------------
consensus_13313#0 AGTAAGTTATAGGCAAAATTGGTTCGATGCTATATAACCAATTTTGTCAATAATAAAAAG 1904
consensus_13313#2 ----------------
consensus_13313#3 ----------------
consensus_13313#1 ----------------
consensus_13313#0 GCTAAAAGTTTATGCC 1920
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||