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Oryza sativa
cluster # 13315 cluster # 13315       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13315#0 length = 1821 sequences # 7  
consensus_13315#1 length = 698 sequences # 5  

consensusID : consensus_13315#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1821
fasta sequence
                              [GTCCAGAGCGGGAGGCGGCCGGCAATCCGCGACCTCCACCTCCTCCTCCTCCTCCTCTCGTCACCACCACCACGGCGACCCCGTCCTCCTCGCCCCTCTAAAAGCCTCTCCCTTCCTTTCTCTCTCCCCTTCTCGTGGGATCTTGTATTCTTGCGTCGTCTTGGGACTCTTGTGGTGGTCAAGAACGAGGACGAGAGAGGTCGGAGAGCGAGGCGGCGGCTGTGCCGTTGCGCGTGCGGTGCGGGTGAGGTAGCTAGCGAGCGAGAGGGGAGATGGAGGCGGTGGCGGTTGCGGGCGGTGGCGCGGGGCTGACAAGGTGGCAGGCGGCGGCGCTGTCGGCGGTGGCGGGGTGGGTGTGGGCGGCCTCCTCCTTCGACCTCACGCGGCGGTCGCGCGCGCTGGTGCAGCCGTGGGTCACCCGCCGCGTGCTCGCCGAGACGCCGTCCATCGTCAGATTCCAGAAGGTGCATCACAAGTTGCTGGACAGTTTCTTCTCTGTGCTGTCATGCGTTGTCTCTGTCCCTTTCTACACCGGATTCCTCCCTCTCCTCTTCTGGAGCGGACACTCCAAGCTGGCTAGGCAGATGACGCTGCTCATGGCATTCTGCGATTACCTTGGCAATTCTGTGAAGGACGCGGTGTCGGCCCCTCGGCCAAGCTCTCCTCCGGTGAGAAGAGTGACAGCTACTGAAGACGAGAAGGAAAATGCCATGGAATATGGATTGCCTTCATCGCACGCTCTTAATACCGTTTGTTTGATGGGATATCTGCTGCATTATGTCCTAACATATGGATCACACGACAATGTTATGGTTGTCACGGGCTTATCTCTAGCTTTCTTGCTTGTTATGTTAGTTGGCATTGGACGGATATATTTGGGCATGCACAGCTTGATTGATGTTATTGCTGGCATCTGTTTTGGCGTTGTAATCCTGGCATTCTGGTTGGCTGTCCATAATCATGTCGATGCTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTCTGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACACAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATTTCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACA-CCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGAAAAGTG-CAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACA-CCGGCATAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACA-CTGCAAGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTA-TGGGACTGTAAATCCGATGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAGCAACCAGGAAGTATTAACATGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCACGAACTCTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCATTGTATTGATGCAGGTTCTTTGTATCCATTTCAC]

[+] EMBL AK071708             [GTCCAGAGCGGGAGGCGGCCGGCAATCCGCGACCTCCACCTCCTCCTCCTCCTCCTCTCGTCACCACCACCACGGCGACCCCGTCCTCCTCGCCCCTCTAAAAGCCTCTCCCTTCCTTTCTCTCTCCCCTTCTCGTGGGATCTTGTATTCTTGCGTCGTCTTGGGACTCTTGTGGTGGTCAAGAACGAGGACGAGAGAGGTCGGAGAGCGAGGCGGCGGCTGTGCCGTTGCGCGTGCGGTGCGGGTGAGGTAGCTAGCGAGCGAGAGGGGAGATGGAGGCGGTGGCGGTTGCGGGCGGTGGCGCGGGGCTGACAAGGTGGCAGGCGGCGGCGCTGTCGGCGGTGGCGGGGTGGGTGTGGGCGGCCTCCTCCTTCGACCTCACGCGGCGGTCGCGCGCGCTGGTGCAGCCGTGGGTCACCCGCCGCGTGCTCGCCGAGACGCCGTCCATCGTCAGATTCCAGAAGGTGCATCACAAGTTGCTGGACAGTTTCTTCTCTGTGCTGTCATGCGTTGTCTCTGTCCCTTTCTACACCGGATTCCTCCCTCTCCTCTTCTGGAGCGGACACTCCAAGCTGGCTAGGCAGATGACGCTGCTCATGGCATTCTGCGATTACCTTGGCAATTCTGTGAAGGACGCGGTGTCGGCCCCTCGGCCAAGCTCTCCTCCGGTGAGAAGAGTGACAGCTACTGAAGACGAGAAGGAAAATGCCATGGAATATGGATTGCCTTCATCGCACGCTCTTAATACCGTTTGTTTGATGGGATATCTGCTGCATTATGTCCTAACATATGGATCACACGACAATGTTATGGTTGTCACGGGCTTATCTCTAGCTTTCTTGCTTGTTATGTTAGTTGGCATTGGACGGATATATTTGGGCATGCACAGCTTGATTGATGTTATTGCTGGCATCTGTTTTGGCGTTGTAATCCTGGCATTCTGGTTGGCTGTCCATAATCATGTCGATGCTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTCTGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACACAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATTTCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACA CCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGAAAAGTG CAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACA CCGGCATAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACA CTGCAAGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTA TGGGACTGTAAATCCGATGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAGCAACCAGGAAGTATTAACATGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCACGAACTCTGAAACTTAACTGCAAAGAAATGCCATTCC                                            ]
[+] EMBL AK102189             [                                                                                                                                              TTGTATTCTTGCGTCGTCTTGGGACTCTTGTGGTGGTCAAGAACGAGGACGAGAGAGGTCGGAGAGCGAGGCGGCGGCTGTGCCGTTGCGCGTGCGGTGCGGGTGAGGTAGCTAGCGAGCGAGAGGGGAGATGGAGGCGGTGGCGGTTGCGGGCGGTGGCGCGGGGCTGACAAGGTGGCAGGCGGCGGCGCTGTCGGCGGTGGCGGGGTGGGTGTGGGCGGCCTCCTCCTTCGACCTCACGCGGCGGTCGCGCGCGCTGGTGCAGCCGTGGGTCACCCGCCGCGTGCTCGCCGAGACGCCGTCCATCGTCAGATTCCAGAAGGTGCATCACAAGTTGCTGGACAGTTTCTTCTCTGTGCTGTCATGCGTTGTCTCTGTCCCTTTCTACACCGGATTCCTCCCTCTCCTCTTCTGGAGCGGACACTCCAAGCTGGCTAGGCAGATGACGCTGCTCATGGCATTCTGCGATTACCTTGGCAATTCTGTGAAGGACGCGGTGTCAGCCCCTCGGCCAAGCTCTCCTCCGGTGAGAAGAGTGACAGCTACTGAAGACGAGAAGGAAAATGCCATGGAATATGGATTGCCTTCATCGCACGCTCTTAATACCGTTTGTTTGATGGGATATCTGCTGCATTATGTCCTAACATATGGATCACACGACAATGTTATGGTTGTCACGGGCTTATCTCTAGCTTTCTTGCTTGTTATGTTAGTTGGCATTGGACGGATATATTTGGGCATGCACAGCTTGATTGATGTTATTGCTGGCATCTGTTTTGGCGTTGTAATCCTGGCATTCTGGTTGGCTGTCCATAATCATGTCGATGCTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTCTGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACACAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATTTCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACA CCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGAAAAGTG CAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACA CCGGCATAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACA CTGCAAGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTA TGGGACTGTAAATCCGATGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAGCAACCAGGAAGTATTAACATGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCACGAACTCTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCATTGTATTGATGCAGGTTCTTTGTATCCATTTCAC]
[+] EMBL AU162168             [                                                                                                                                                      TTNCNTCGTCTTGGGACTCTTGTGGTGGTCAAGAACGAGGACGAGAGAGGTCGGAGAGCNAGGCGGCGGCTGTCCCGTTCCGCGTNCGGTGCGGGTAAGGTAGCTAGCNAGCAAAAGGGGAGATGGAGGCGGTGGCGGTTGCGGGCGGTGGCGCGGGGCTGACAAGGTGGCAGGCGGCGGCGCTGTCGGCGGTGGCGGGGTGGGTGTGGGCGGCCTCCTCCTTCNACCTCACGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK060174             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACGGATATATTTGGGCATGCACAGCTTGATTGATGTTATTGCTGGCATCTGTTTTGGCGTTGTAATCCTGGCATTCTGGTTGGCTGTCCATAATCATGTCGATGCTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTCTGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACACAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATTTCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACA CCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGAAAAGTG CAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTATTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACA CCGGCATAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACA CTGCAAGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTA TGGGACTGTAAATCCGATGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAGCAACCAGGAAGTATTAACATGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCACGAACTCTGAAACTTAACTGCAAAGAAATGCCATTCCTTTT                                        ]
[+] EMBL CA999472             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTCTGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACACAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATTTCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCGGGAGGGTTCTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CA998808             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTTTTGTTGTCGCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTCTGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACACAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATTTCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACA CCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGAAAAGTG C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BQ906333             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACACCCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCTTCCGAAAAGTGCCAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCCGGCATAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACACCTGCAAGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTANNGGGACTGTAAATCCGATGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTTTTTTGTCCATAGTANCAACCGGGAAGTATTAACAT CTGTGAAATTTTGTTTCAGGANGAA                                                                                               ]


>consensus_13315#0 GTCCAGAGCGGGAGGCGGCCGGCAATCCGCGACCTCCACCTCCTCCTCCTCCTCCTCTCG TCACCACCACCACGGCGACCCCGTCCTCCTCGCCCCTCTAAAAGCCTCTCCCTTCCTTTC TCTCTCCCCTTCTCGTGGGATCTTGTATTCTTGCGTCGTCTTGGGACTCTTGTGGTGGTC AAGAACGAGGACGAGAGAGGTCGGAGAGCGAGGCGGCGGCTGTGCCGTTGCGCGTGCGGT GCGGGTGAGGTAGCTAGCGAGCGAGAGGGGAGATGGAGGCGGTGGCGGTTGCGGGCGGTG GCGCGGGGCTGACAAGGTGGCAGGCGGCGGCGCTGTCGGCGGTGGCGGGGTGGGTGTGGG CGGCCTCCTCCTTCGACCTCACGCGGCGGTCGCGCGCGCTGGTGCAGCCGTGGGTCACCC GCCGCGTGCTCGCCGAGACGCCGTCCATCGTCAGATTCCAGAAGGTGCATCACAAGTTGC TGGACAGTTTCTTCTCTGTGCTGTCATGCGTTGTCTCTGTCCCTTTCTACACCGGATTCC TCCCTCTCCTCTTCTGGAGCGGACACTCCAAGCTGGCTAGGCAGATGACGCTGCTCATGG CATTCTGCGATTACCTTGGCAATTCTGTGAAGGACGCGGTGTCGGCCCCTCGGCCAAGCT CTCCTCCGGTGAGAAGAGTGACAGCTACTGAAGACGAGAAGGAAAATGCCATGGAATATG GATTGCCTTCATCGCACGCTCTTAATACCGTTTGTTTGATGGGATATCTGCTGCATTATG TCCTAACATATGGATCACACGACAATGTTATGGTTGTCACGGGCTTATCTCTAGCTTTCT TGCTTGTTATGTTAGTTGGCATTGGACGGATATATTTGGGCATGCACAGCTTGATTGATG TTATTGCTGGCATCTGTTTTGGCGTTGTAATCCTGGCATTCTGGTTGGCTGTCCATAATC ATGTCGATGCTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTC TGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACA CAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATT TCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCG GGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCT CGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCT ATGTTCCAGCGCTGAAGGCTTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCG GTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCA TAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATAT TCACTCATTTAAGTTTGTAGTGAACACTGCAAGATGCATTCTACTTGGAGACTTGCAAAA TCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGA TGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAG CAACCAGGAAGTATTAACATGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCA CGAACTCTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCATTGTATTGATGCA GGTTCTTTGTATCCATTTCAC



consensusID : consensus_13315#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 698
fasta sequence
                              [TTCCCCAATCGTGAGGTCCCCCTCCTTTTCAGCCCCCAATTACCGGTTAGGGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCCTCCTAGTGTGAAATTTTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGC-TTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCATAAGGTTCGTTCAGTACGCCAG-CCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACCCTG-CA-AGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGATGATCTCC-CCTTTATTTTTATTTTTGCGTGGTGTG-TGTAGA-GGTGTTTTGTCCATAGTAGC-AACCA-GGAAGTATTAACC--TGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCCCCCCGAACTTTGAAACTTAACTGCA-AAGAAATGCCATTCCTTTTCTTGCA--GTATTGAAAAAAAAAAAAAAANCAAAAAAAAAAAAAAAAAAAGAACAAAAA]

[-] EMBL CA762286             [TTCCCCAATCGTGAGGTCCCCCTCCTTTTCAGCCCCCAATTACCGGTTAGGGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCCTCCTAGTGTGAAATTTTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGC TTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCATAAGGTTCGTTCAGTACGCCAG CCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACCCTG CA AGATGCATTTTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATTTTATGGGGCTGTAAATCCGATGATCTCC CCTTTATTTTTATTTTTGCGTGGTGTG TGTAGA GGTGTTTTGTCCATAGTAGC AACCA GGAAGTATTAACC  TGCTGTGAAATTTTGTTTCATGATGAAGACAGCGGCCCCCCCGAACTTTGAAACTTAACTGCA AAGAAATGCCATTCCTTTTCTTGCATTGTATTGAAAAAAAAAAAA                                 ]
[-] EMBL CA762285             [TTCCCCAATCGTGAGGTCCCCCTCCTTTTCAGCCCCCAATTACCGGTTAGGGTATTTGTCGGGAGGGTTCTCGTGGGGATCCCAACCCTCCTAGTGTGAAATTTTGCAGTAAAGCTCTCTCGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGC TTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCATAAGGTTCGTTCAGTACGCCAG CCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACCCTG CA AGATGCATTTTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATTTTATGGGGCTGTAAATCCGATGATCTCC CCTTTATTTTTATTTTTGCGTGGTGTG TGTAGA GGTGTTTTGTCCATAGTAGC AACCA GGAAGTATTAACC  TGCTGTGAAATTTTGTTTCATGATGAAGACAGCGGCCCCCCCGAACTTTGAAACTTAACTGCA AAGAAATGCCATTCCTTTTCTTGCATTGTATTGAAAAAAAAAAAA                                 ]
[+] EMBL BM422078             [                                                                                                                                                                    ATTGTATCAACCTGCTATGTTCCAGCGCTGAAGGCGTTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCGGTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCATAAGGTTCGTTCAGTACGCCAGCCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACACTGCCA AGATGCATTCTACTTGGAGACTTGCAAAATCCCCAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGATGATCTCCACCTTTATTTTTATTTTTGCGTGGTGTGCTGTAGACGGTGTTTTGTCCATAGTAGC AACCACGGAAGTATTAACCATTGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCACGAACTNTGAAACTTAACTGCA AAGAAATGCCATTCCTTTTCTNGCA    AAAAAAAAAAAAAAAANCANCAAAAAAAAAAAAAAAAAAAGAACAAAA ]
[+] EMBL BM038771             [                                                                                                                                                                                                                                                                                      GGCGTACGATGTGGACACCGGCATAAGGTTC TTCAGTACGCCAC CCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATATTCACTCATTTAAGTTTGTAGTGAACCCTG CACAGATGCATTCTACTTGGAGACTTGCCAAATCCCCAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGATGATCTCC CCTTTATTTTTATTTTTGCGTGGTGTG TGTAGA GGTGTTTTGTCCATAGTAGC CACCC GGAAGTATTAACC  TGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCCCCCCGAACTCTGAAACTTAACTCCACAAGAAATNCCCTTCCTTTTCTT CC  CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA]
[+] EMBL C98485               [                                                                                                                                                                                                                                                                                                                                                                        ATTCACTCATTTAAGTTTGTAGTGAACACTG CA AGATGCATTCTACTTGGAGACTTGCAAAATCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGATGATCTCC ACTTTATTTTTATTTTTGCGTGGTGTG TGTANA GGTGTTTTGTCCATAGTAGCAAACCA GGAAGTATTAACA  TGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCACGAACTCTGAAACTTAACTGCA AAGAAATGCCATTCCTTTTCTTGCA    A   AAAAAAAAAAAAAAA  AAAAAA                      ]


>consensus_13315#1 TTCCCCAATCGTGAGGTCCCCCTCCTTTTCAGCCCCCAATTACCGGTTAGGGTATTTGTC GGGAGGGTTCTCGTGGGGATCCCAACCCTCCTAGTGTGAAATTTTGCAGTAAAGCTCTCT CGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCT ATGTTCCAGCGCTGAAGGCTTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCG GTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCA TAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATAT TCACTCATTTAAGTTTGTAGTGAACCCTGCAAGATGCATTCTACTTGGAGACTTGCAAAA TCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGA TGATCTCCCCTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAG CAACCAGGAAGTATTAACCTGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCCCCC CGAACTTTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCAGTATTGAAAAAAA AAAAAAAANCAAAAAAAAAAAAAAAAAAAGAACAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13315#0      GTCCAGAGCGGGAGGCGGCCGGCAATCCGCGACCTCCACCTCCTCCTCCTCCTCCTCTCG 60
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TCACCACCACCACGGCGACCCCGTCCTCCTCGCCCCTCTAAAAGCCTCTCCCTTCCTTTC 120
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TCTCTCCCCTTCTCGTGGGATCTTGTATTCTTGCGTCGTCTTGGGACTCTTGTGGTGGTC 180
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      AAGAACGAGGACGAGAGAGGTCGGAGAGCGAGGCGGCGGCTGTGCCGTTGCGCGTGCGGT 240
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      GCGGGTGAGGTAGCTAGCGAGCGAGAGGGGAGATGGAGGCGGTGGCGGTTGCGGGCGGTG 300
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      GCGCGGGGCTGACAAGGTGGCAGGCGGCGGCGCTGTCGGCGGTGGCGGGGTGGGTGTGGG 360
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      CGGCCTCCTCCTTCGACCTCACGCGGCGGTCGCGCGCGCTGGTGCAGCCGTGGGTCACCC 420
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      GCCGCGTGCTCGCCGAGACGCCGTCCATCGTCAGATTCCAGAAGGTGCATCACAAGTTGC 480
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TGGACAGTTTCTTCTCTGTGCTGTCATGCGTTGTCTCTGTCCCTTTCTACACCGGATTCC 540
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TCCCTCTCCTCTTCTGGAGCGGACACTCCAAGCTGGCTAGGCAGATGACGCTGCTCATGG 600
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      CATTCTGCGATTACCTTGGCAATTCTGTGAAGGACGCGGTGTCGGCCCCTCGGCCAAGCT 660
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      CTCCTCCGGTGAGAAGAGTGACAGCTACTGAAGACGAGAAGGAAAATGCCATGGAATATG 720
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      GATTGCCTTCATCGCACGCTCTTAATACCGTTTGTTTGATGGGATATCTGCTGCATTATG 780
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TCCTAACATATGGATCACACGACAATGTTATGGTTGTCACGGGCTTATCTCTAGCTTTCT 840
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TGCTTGTTATGTTAGTTGGCATTGGACGGATATATTTGGGCATGCACAGCTTGATTGATG 900
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TTATTGCTGGCATCTGTTTTGGCGTTGTAATCCTGGCATTCTGGTTGGCTGTCCATAATC 960
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      ATGTCGATGCTTTTGTTGTCTCCGGTCAAAATGTTACAACCTTCTGGGCGAGCCTTTCTC 1020
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      TGTTGCTGTGCTTCGCATATCCAAAACCAGAATTCCCAACTCCTAGCTTTGAATACCACA 1080
consensus_13315#1      ------------------------------------------------------------
                                                                                   

consensus_13315#0      CAGCATTCAATGGGGTGGCTTTTGGAATTGTCTATGGAATCCAACAAACCTACTTCCATT 1140
consensus_13315#1      -----------------------------------------------------------T 1
                                                                                  *

consensus_13315#0      TCCACAATCCTGATGTCCCCCTCATTTTCAGCCCACAATTACCGCTTATTGTATTTGTCG 1200
consensus_13315#1      TCCCCAATCGTGAGGTCCCCCTCCTTTTCAGCCCCCAATTACCGGTTAGGGTATTTGTCG 61
                       *** ***** *** ********* ********** ********* ***  **********

consensus_13315#0      GGAGGGTTCTCGTGGGGATCCCAACCATCCTAGTTGTGAAATTCTGCAGTAAAGCTCTCT 1260
consensus_13315#1      GGAGGGTTCTCGTGGGGATCCCAACCCTCCTAGT-GTGAAATTTTGCAGTAAAGCTCTCT 120
                       ************************** ******* ******** ****************

consensus_13315#0      CGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCT 1320
consensus_13315#1      CGAAATGGCTTCTACCGGTGATGTGCAACACCCTGGGCATTCCTATTGTATCAACCTGCT 180
                       ************************************************************

consensus_13315#0      ATGTTCCAGCGCTGAAGGCTTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCG 1380
consensus_13315#1      ATGTTCCAGCGCTGAAGGCTTCCGAAAAGTGCAAGGTCAAGTCCGACGCGAAGCAGGGCG 240
                       ************************************************************

consensus_13315#0      GTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCA 1440
consensus_13315#1      GTTATCTCCAGAAGGTGTTCTCCCTCTTTCCACAGAAGGCGTACGATGTGGACACCGGCA 300
                       ************************************************************

consensus_13315#0      TAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATAT 1500
consensus_13315#1      TAAGGTTCGTTCAGTACGCCAGCCTTGCATGGTCAGTGGTCGACCTGGTGCCGGCCATAT 360
                       ************************************************************

consensus_13315#0      TCACTCATTTAAGTTTGTAGTGAACACTGCAAGATGCATTCTACTTGGAGACTTGCAAAA 1560
consensus_13315#1      TCACTCATTTAAGTTTGTAGTGAACCCTGCAAGATGCATTCTACTTGGAGACTTGCAAAA 420
                       ************************* **********************************

consensus_13315#0      TCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGA 1620
consensus_13315#1      TCCCAAATGGGCTATTCCTACTCATGAGAGAGAGATAATCTTATGGGACTGTAAATCCGA 480
                       ************************************************************

consensus_13315#0      TGATCTCCACTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAG 1680
consensus_13315#1      TGATCTCCCCTTTATTTTTATTTTTGCGTGGTGTGTGTAGAGGTGTTTTGTCCATAGTAG 540
                       ******** ***************************************************

consensus_13315#0      CAACCAGGAAGTATTAACATGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCACCA 1740
consensus_13315#1      CAACCAGGAAGTATTAACCTGCTGTGAAATTTTGTTTCATGATGAAGACAGCGACCCCCC 600
                       ****************** ************************************* ** 

consensus_13315#0      CGAACTCTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCATTGTATTGATGCA 1800
consensus_13315#1      CGAACTTTGAAACTTAACTGCAAAGAAATGCCATTCCTTTTCTTGCA--GTATTGAAAAA 658
                       ****** ****************************************  *******   *

consensus_13315#0      GGTTCTTTGTATCCATTTCAC------------------- 1821
consensus_13315#1      AAAAAAAAAANCAAAAAAAAAAAAAAAAAAAGAACAAAAA 698
                                     *    *                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)