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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1461 fasta sequence
[CATGGACTCAAGGAGTAGAAAATCACGCGCCGCGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAAAACTAATAAACGAGGCCATGAAGCTCCCGTTCCATGTGTTCTGTGATTCTGTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCTGAACCAGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAGCCATCAAGGTACATGGGATGATGGGAGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCATGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTGCTCCCAGTTGGTTGCAGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCATGTATGGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCCGCACTCCTTCCGATTGCACGCTAGCTTATTTACTCTTTATCGAACTTAACAAAGGTTGATCAAATTTATAGAAAAAAAATTAACATCTAAAATATGAAATTAGTTTTATTAAACTTAAAATTGAATGTAGTTTGATAACATGTTTGT]
[+] EMBL CF319623 [CATGGACTCAAGGAGTAGAAAATCACGCGCCGCGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCG ]
[+] EMBL AK110887 [ GCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAAAACTAATAAACGAGGCCATGAAGCTCCCGTTCCATGTGTTCTGTGATTCTGTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCTGAACCAGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAGCCATCAAGGTACATGGGATGATGGGAGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCATGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTGCTCCCAGTTGGTTGCAGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCATGTATGGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCCGCACTCCTTCCGATTGCACGCTAGCTTATTTACTCTTTATCGAACTTAACAAAGGTTGATCAAATTTATAGAAAAAAAATTAACATCTAAAATATGAAATTAGTTTTATTAAACTTAAAATTGAATGTAGTTTGATAACATGTTTGT]
consensusID : consensus_13320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1356 fasta sequence
[CGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGAAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTACTATTGAAATAGTACCTGTATTTTTCAATAAAAACCTGCAATTTGGACCGAACAAGTTGATATCTTCATTGCTACCAGGATGATAAAACCATGGCTGAACCATTTGCATTGGATGACCATCACATCTATTTGATATGCTTCGGTGCTGGATTCAGTGTGGAATGATATTTCTTTGATTTGTCTTGCTTTATCTATGAGCTGTCAGCTATTGAAAAGTATTATTAGTGCTTTTTATTCTTGGGTAGCATATGCCATTTAAATTATTTGAACTTGTGAGATCAATACATCCTGGTGGAAGTTAGTT]
[+] EMBL AK100249 [CGCGACACAATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACTCTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGAAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTACTATTGAAATAGTACCTGTATTTTTCAATAAAAACCTGCAATTTGGACCGAACAAGTTGATATCTTCATTGCTACCAGGATGATAAAACCATGGCTGAACCATTTGCATTGGATGACCATCACATCTATTTGATATGCTTCGGTGCTGGATTCAGTGTGGAATGATATTTCTTTGATTTGTCTTGCTTTATCTATGAGCTGTCAGCTATTGAAAAGTATTATTAGTGCTTTTTATTCTTGGGTAGCATATGCCATTTAAATTATTTGAACTTGTGAGATCAATACATCCTGGTGGAAGTTAGTT]
[+] EMBL AU068096 [ AATCAGTTCACCACCGCAGCCACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCC ]
[+] EMBL C27066 [ GGAGGTGGCGGCGTGCNTGGGCATCTCGGCGGGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCNTATTGGTTTTAAGTGGATTTCCTGTGCACAATGTCATCGATTCTNCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGCTTCCCTGTNANATTTNTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCTAGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAG ]
[+] EMBL OSR08793A [ GGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTCTAGCTGGTGTCATCTC ]
consensusID : consensus_13320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 832 fasta sequence
[AGGGGGGGAAAGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAAGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCAC-TTTTGAAACTCTT-GTTAATCCTGAAAGGACTGTT-CCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA-TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTTACTATTGAAATAGTA-CCTGTATTTTTCAATAAAAACCTGCAATTT-GGACCGAACAAAAAAAAAAAAAAAAAAACACTGTCCATGCCGT]
[+] EMBL CA766808 [AGGGGGGGAAAGAAGTTGCGGCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAAGATCATAGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCAC TTTTGAAACTCTT GTTAATCCTGAAAGGACTGTT CCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGACTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAANGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATATTTTTTCTAGCTGGNGTCATCTCGGCATTAAAGAACTATGNCCTTTTTTACTATTGGAAAAGTACCCTGNATTTTTTAATAAAAACCTGCAATTTNGGACCGAACAAgntgat ]
[+] EMBL CF327643 [ ggactGAAGGAGTAGAA ATGAAACTCTT GTTATTCCTGAAA GACTGTT CCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAAGAGTTTGATCGTTGTTCAACACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU068097 [ TACCACTTTTTGAAACTCTTGGTTAATCCTGAAAGGACTGTTCCCTGACTACGTTGAACATCTCATTAAAATTGGCACTGATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCC TTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAACAAAAAAAAAAAAAAA ]
[-] EMBL CF319622 [ CCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATT GCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCC TTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAACAAAAAAAAAAAAAAAAAAACACTGTCCATGCCGT]
[-] EMBL CF327644 [ TTTAGTGATGTAATCCCACTACTATTGGCATTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAACAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCAGATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAAAAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGATGCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTTGATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCTGTGCACATGCTGGATA TTTTTCTAGCTGGTGTCATCTCGGCATTAAAGAACTATGCCTTTTTTTACTATTGAAATAGTA CCTGTATTTTTCAATAAAAACCTGCAATTT GGACCGAAAAAAA ]
consensusID : consensus_13320#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[ANATGTTATGATATTGTNTCAGGTTTTCCANAAAATGACTTTTGNTNTAAAACTGCCAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTTTTAATTTTTAAAACNCCAGCTTTTTTTAGNGCTTAAACTTATTTAACCTTCTGNGCNCATGCTGGANATTTTTCTAGCNGGNGTCATCTCGGCATTAAANAACTATGCCTTTTTTACTATTGAAANAGNACCTGTATTTTTCAATAAAAACCTGCAATTTGGNCCGAACAAGTTGATATNTTCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU181626 [ANATGTTATGATATTGTNTCAGGTTTTCCANAAAATGACTTTTGNTNTAAAACTGCCAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGCAAGATTTTTTAATTTTTAAAACNCCAGCTTTTTTTAGNGCTTAAACTTATTTAACCTTCTGNGCNCATGCTGGANATTTTTCTAGCNGGNGTCATCTCGGCATTAAANAACTATGCCTTTTTTACTATTGAAANAGNACCTGTATTTTTCAATAAAAACCTGCAATTTGGNCCGAACAAGTTGATATNTTCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13320#1 --------------------------------CGCGACACAATCAGTTCACCACCGCAGC 28
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 CATGGACTCAAGGAGTAGAAAATCACGCGCCGCGCGACACAATCAGTTCACCACCGCAGC 60
consensus_13320#1 CACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCG 88
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 CACCCCTAGCTAAATCCCTCGGCGGCGGGGGAGGTGGCGGCGTGCGTGGGCATCTCGGCG 120
consensus_13320#1 GGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTC 148
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 GGGGTCGTACGCTCATGTCGGCGCTGGTTTGGCTCTGCGTATTGGTTTTAAGTGGATTTC 180
consensus_13320#1 CTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGC 208
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 CTGTGCACAATGTCATCGATTCTTCGATCCATTCAGCTGAGGAACAGTATATGGAGTAGC 240
consensus_13320#1 TTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCT 268
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 TTCCCTGTCAGATTTCTTAAGCAACAAGCCGGATTATCAACTGTAGAATTGCTTGATCCT 300
consensus_13320#1 AGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCG 328
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ----------------------------------------AGGGGGGGAAAGAAGTTGCG 20
consensus_13320#0 AGAAGCTGTGGGAAACGACATTTCACAACACAAGTACAGGAACATGGGAAGGAAGTTGCG 360
consensus_13320#1 GCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCAT 388
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 GCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAAGATCAT 80
consensus_13320#0 GCGGCAGCAACTATTCTAGTTTTTGATCTTGAGACTACTGGCTATTTCCATAAGGATCAT 420
consensus_13320#1 AGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACT 448
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 AGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACT 140
consensus_13320#0 AGAATAGTTGAGTTTGCACTCTGTGATCTTTCTGGAGGAAAGAATAGCACTTTTGAAACT 480
consensus_13320#1 CTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACT 508
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 CTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACT 200
consensus_13320#0 CTTGTTAATCCTGAAAGGACTGTTCCTGACTACGTTGAACATCTCATTAAAATTGGCACT 540
consensus_13320#1 GATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCA 568
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 GATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCA 260
consensus_13320#0 GATCTCGTGTGCAGGCCTGGTATCCCAAGGTTTAGTGATGTAATCCCACTACTATTGGCA 600
consensus_13320#1 TTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAA 628
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 TTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAA 320
consensus_13320#0 TTCGTTCGAAGTCGCCAAGCTCCTGGCAAGCCAGTTCTGTGGGTTGCTCATAACGCAAAA 660
consensus_13320#1 CAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCA 688
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 CAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCA 380
consensus_13320#0 CAATTTGATGCTCGTTTCCTTGCTCAGGAGTTTGATCGTTGTTCAGCACCACTTCCTGCA 720
consensus_13320#1 GATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGAAAA 748
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 GATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAA 440
consensus_13320#0 GATTGGCTGTTTTTTGACACCCTTCTCTTGGCAAAAAAGATGGTGAAAGCAGAGGGGAAA 780
consensus_13320#1 AAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGAT 808
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 AAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGAT 500
consensus_13320#0 AAACGTCGTACAAGCTTGGAGGCACTGAGAGAACACTATGGCATCGTCTCGCATGACGAT 840
consensus_13320#1 GCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTT 868
consensus_13320#3 -----------------ANATGTTATGATATTGTNTCAGGTTTTCCANAAAATGACTTTT 43
consensus_13320#2 GCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTT 560
consensus_13320#0 GCGCATAGAGCAATGCGAGATGTTATGATATTGTCTCAGGTTTTCCAGAAAATGACTTTT 900
* *************** ************ ************
consensus_13320#1 GATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGC 928
consensus_13320#3 GNTNTAAAACTGCCAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGC 103
consensus_13320#2 GATCTAAAACTGACAAATGAAGAACTAATAAACGAGGCCATGAAGGCAAGTGAATTCAGC 620
consensus_13320#0 GATCTAAAACTGACAAATGAAAAACTAATAAACGAGGCCATGAAGCT---CCCGTTCCAT 957
* * ******** ******** *********************** ***
consensus_13320#1 AAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCT 988
consensus_13320#3 AAGATTTTTTAATTTTTAAAACNCCAGCTTTTTTTAGNGCTTAAACTTATTTAACCTTCT 163
consensus_13320#2 AAGATTTCTTAATTTTTAAAACTCCAGCTTTTTTTAGTGCTTAAACTTATTTAACCTTCT 680
consensus_13320#0 GTG-TTCTGTGATTCT--GTCTGCTTGCTTTTTCTATGGACCAGTTTCGAACAGCAGTCT 1014
* ** * *** * * ******* ** * * * * * ***
consensus_13320#1 GTGC---ACATGCTGGATATTTT--TCTAGCTGGTGTCATCTCGGCATTAAAGAACTATG 1043
consensus_13320#3 GNGC---NCATGCTGGANATTTT--TCTAGCNGGNGTCATCTCGGCATTAAANAACTATG 218
consensus_13320#2 GTGC---ACATGCTGGATATTTT--TCTAGCTGGTGTCATCTCGGCATTAAAGAACTATG 735
consensus_13320#0 GAACCAGAGAGAGAAGAAATTTAGATGTCTCGGAGGTTTGCACACGATCAACGGATCAAG 1074
* * * ** **** * * * * ** * * ** ** * * *
consensus_13320#1 CCTTT--------TTT-ACTATTGAAA-------TAGTACCTGTA-----TTTTTCAATA 1082
consensus_13320#3 CCTTT--------TTT-ACTATTGAAA-------NAGNACCTGTA-----TTTTTCAATA 257
consensus_13320#2 CCTTT--------TTTTACTATTGAAA-------TAGTACCTGTA-----TTTTTCAATA 775
consensus_13320#0 CCATCAAGGTACATGGGATGATGGGAGGGAAACCTGGTACCCGTACGCCCTCTTGCAGCA 1134
** * * * ** * * * *** *** * ** ** *
consensus_13320#1 AAA-------ACCTGCAATTTGGACCG-AACAAGTTGATATCTTCATTGCTACCAGGATG 1134
consensus_13320#3 AAA-------ACCTGCAATTTGGNCCG-AACAAGTTGATATNTTCATTGCTAAAAAAAAA 309
consensus_13320#2 AAA-------ACCTGCAATTTGGACCG-AACAAA-----------------AAAAAAAAA 810
consensus_13320#0 TGAGAAATGGACCTGCAGGATCAGCTATAGCACATGCATGTTTTGCTCCCAGTTGGTTGC 1194
* ******* * * * **
consensus_13320#1 ATAAAACCATGGCTGAACCATTTGCATTGGATGACCATCACATCTATTTGATATGCTTCG 1194
consensus_13320#3 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 330
consensus_13320#2 AAAAAAACACTGTCCATGCCGT-------------------------------------- 832
consensus_13320#0 AGCTTCAACACATGGGAAACGGGCGGCTCCACATCCATCTTGCGCTGACCGCGTCCTGCA 1254
*
consensus_13320#1 GTGCTGGATTCAGTGTGGAATGATATTTCTTTGATTTGTCTTGCTTTATCTATGAGCTGT 1254
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 TGTATGGCGCCAGCATCGGCCACGAGGCTTCGATTTCTTCTTCCTGCCCCGCCATGACCC 1314
consensus_13320#1 CAGCTATTGAAAAGTATTATTAGTGCTTTTTATTCTTGGGTAGCATATGCCATTTAAATT 1314
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 GCACTCCTTCCGATTGCACGCTAGCTTATTTACTCTTTATCGAACTTAACAAAGGTTGAT 1374
consensus_13320#1 ATTTGAACTTGTGAGATCAATACATCCTGGTGGAAGTTAGTT------------------ 1356
consensus_13320#3 ------------------------------------------------------------
consensus_13320#2 ------------------------------------------------------------
consensus_13320#0 CAAATTTATAGAAAAAAAATTAACATCTAAAATATGAAATTAGTTTTATTAAACTTAAAA 1434
consensus_13320#1 ---------------------------
consensus_13320#3 ---------------------------
consensus_13320#2 ---------------------------
consensus_13320#0 TTGAATGTAGTTTGATAACATGTTTGT 1461
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||