cluster # 13343

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13343 cluster # 13343 Sequences # 12 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13343#0 length = 918 sequences # 5
consensus_13343#1 length = 884 sequences # 4

consensus_13343#2 length = 813 sequences # 1
consensus_13343#3 length = 663 sequences # 1
consensus_13343#4 length = 286 sequences # 1

consensusID : consensus_13343#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 918
fasta sequence

                              [AAGCCATGGATGGATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTCGTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAG-----AGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGATGCTTGATGCTTGAAAGAAGCACAACAGATGCTTCTGAGGCAGAGGAAATAGAT]

[+] EMBL CB656266             [AAGCCATGGATGGATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTCGTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCT CCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGTGCAGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAAT                                                                                                                                                                 ]
[+] EMBL AK067804             [                         CTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTCGTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAG     AGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGATGCTTGATGCTTGAAAGAAGCACAACAGATGCTTCTGAGGCAGAGGAAATAGAT]
[+] EMBL CB660616             [                                                             TGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGTGCAGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGATGCTTGATGCTTGAAAGAAGCACAAC                            ]
[+] EMBL CB668564             [                                                                                                  AGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAG     AGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAAGGGATGCTTGATGCTTGAAAGAAGCACAACA                           ]
[+] EMBL CB652739             [                                                                                                                                                    GCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAG     AGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTTCTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATTATTGTAACCCTTGGAGAAAgg                                                         ]




>consensus_13343#0
AAGCCATGGATGGATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTC
GTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACA
CCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCC
GCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTC
GCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTC
CAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCA
AGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAA
GATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACC
TATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCT
CCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGAC
ATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGGCAAGC
CAAAGAAAACTTCCTATTTTGATTGATGCCGAACGGAAGAGGGATGGATTGGACGAGCTT
CTCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCCTCAGGCTTGGACAGGAGCC
TCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGCCTAATATCAAGTTTATT
ATTGTAACCCTTGGAGAAAAGGGATGCTTGATGCTTGAAAGAAGCACAACAGATGCTTCT
GAGGCAGAGGAAATAGAT

consensusID : consensus_13343#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 884
fasta sequence

                              [CCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTTATAGAGGATCTTGCAAATATAAATGCCTACTCTCTGTTTTTAATATTTTTTTTGGGTAGGGGCACTCAAATTTCCCATTTGCGTTTAGTGGAAACTATTAGAGTTCTTAGAACATGAATTGTCACTTACTAAAAGTTTATTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACATAGGAATGTTTTTTTTCCTATTCGGAATTCCACTCTTTCTACATGTATGTCTGGGAATATCACTATGAATAGGAAAGCTGCCATGTCCAATTCGTTAATATATAACATATGCAGTGTCAATGCCATGTGTAAGCCTTTTTTCTACACACCTGTAGCATTTTTTT]

[+] EMBL CB645772             [CCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTTATAGAGGATCTTGCAAATATAAATGCCTACTCTCTGTTTTTAATATTTTTTTTGGGTAGGGGCACTCAAATTTCCCATTTGCGTTTAGTGGAAACTATTAGAGTTCTTAGAACATGAATTGTCACTTACTAAAAGTTTATTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACATAGGAATGTTTTTTTTCCTATTCGGAATTCCACTCTTTCTACATGTATGTCTGGGAATATCACTATGAATAGGAAAGCTGCC                                                                                  ]
[+] EMBL AU062709             [                                                                                                                                                                                                                                                                                                                                                                           GTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGNTTGCATGAAACTGCTTTACTAGTTGCTGAAGAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTTATAGAGGATCTTGCAAATATAAATGCCTACTCTCTGTTTTTAATATTTTTTTTGGGTAGGGGCACTCAAATTTCCCATTTGCGTTTAGTGGNAACTATTAGAGTTCTTAGAACATGAATTGTCACTTACTAAAAGTTTATTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACATAGGGATGTTT                                                                                                                                                         ]
[+] EMBL CB639683             [                                                                                                                                                                                                                                                                                                                                                                                    TTCACACTCCTGGTTATCCTCCT TGGTCCCTGAAGA CTCACACAAAAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTTATAGAGGATCTTGCAAATATAAATGCCTACTCTCTGTTTTTAATATTTTTTTTGGGTAGGGGCACTCAAATTTCCCATTTGCGTTTAGTGGAAACTATTAGAGTTCTTAGAACATGAATTGTCACTTACTAAAAGTTTATTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACATAGGAATGTTTTTTTTCCTATTCGGAATTCCACTCTTTCTACATGTATGTCTGGGAATATCACTATGAATAGGAAAGCTGCCATGTCCAATTCGTTAATATATAACATATGCAGTGTCAATGCCATGTGTAAGCCTTTTTTCTACACACCTGTAGCATTTTTTT]
[+] EMBL OSS14677A            [                                                                                                                                                                                                                                                                                                                                                                                       ACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGNTCACACAAGAAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTTTACTAGTTGCTGAAGAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTTATAGAGGATCTTGCAAATATAAATGCCTACTCTCTGTTTTTAATATTTTTTTTGGGTAGGGGCACTCAAATTTCCCATTTGCGTTTAGTGGAAACTATTAGAGTTCTTAGAACATGAATTGTCACTTACTAAAAGTTTATTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACATAGGAATGTTTTTNTTCCTATTCGGAATTCCACTCTTTCTACATGTATGTCTGGGGATATCACTA                                                                                                   ]




>consensus_13343#1
CCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCC
TCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTC
GCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGC
GGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATA
TCCAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCC
TGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGAAAA
CTCGTACTTGTATTCACACTCCTGGTTATCCTCCTATGGTCCCTGAAGAGCTCACACAAG
AAAACTTGTTTGCCGCTTTAGACGGTGCTGACATTGTATATTTTGATGTCAGATTGCATG
AAACTGCTTTACTAGTTGCTGAAGAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTT
ATAGAGGATCTTGCAAATATAAATGCCTACTCTCTGTTTTTAATATTTTTTTTGGGTAGG
GGCACTCAAATTTCCCATTTGCGTTTAGTGGAAACTATTAGAGTTCTTAGAACATGAATT
GTCACTTACTAAAAGTTTATTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACA
TAGGAATGTTTTTTTTCCTATTCGGAATTCCACTCTTTCTACATGTATGTCTGGGAATAT
CACTATGAATAGGAAAGCTGCCATGTCCAATTCGTTAATATATAACATATGCAGTGTCAA
TGCCATGTGTAAGCCTTTTTTCTACACACCTGTAGCATTTTTTT

consensusID : consensus_13343#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence

                              [GCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGTAACTCACTCATTTTCTACCTACTCTACATGTTCATTAGATATATATATATGTCCTCATGTTTGTACAACTAGCTAAGTACCCATCTGTTGCAATTGCAACGCAACTTTAAACTTGACAAGTTCTACATAATCCTTTTAAGAGATGATATATACTCCATTCCCAACTAAGCATAACATTCCTAAAAGAAGCAACATATGCAAATCTTTCTTCTAAACAGATGCCCCTTGACTTATTTTAAGTGAAGTACACCCTTTTGGTCACTTGCTTACCAATGGATATGCATTTACAGTTTATTCATTGGTATGATACAATGTACATATCACTTTGGTTCACGTCCTGATGTTAAAAGTGTCCCCTTTTTTTATCTCTTTTTTAAAAATAATCTTACCGTTCAT]

[+] EMBL CB633089             [GCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGCTTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGTAACTCACTCATTTTCTACCTACTCTACATGTTCATTAGATATATATATATGTCCTCATGTTTGTACAACTAGCTAAGTACCCATCTGTTGCAATTGCAACGCAACTTTAAACTTGACAAGTTCTACATAATCCTTTTAAGAGATGATATATACTCCATTCCCAACTAAGCATAACATTCCTAAAAGAAGCAACATATGCAAATCTTTCTTCTAAACAGATGCCCCTTGACTTATTTTAAGTGAAGTACACCCTTTTGGTCACTTGCTTACCAATGGATATGCATTTACAGTTTATTCATTGGTATGATACAATGTACATATCACTTTGGTTCACGTCCTGATGTTAAAAGTGTCCCCTTTTTTTATCTCTTTTTTAAAAATAATCTTACCGTTCAT]




>consensus_13343#2
GCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGACCACGACCTCCTCGCCCTC
GCCGCCGCCCACCGACCATGGCCTCCGCCGCCGCTTCTTCCTCCAAACCTCCCGTCGTGC
TTGGCTGCGGCGCCGTCTCCGCGGACTACCTCGCCACCGTCGCCTCCTTCCCCAACCCCG
ACGACAAGATCCGAAGCCTAACGCTCAAGGTCCAGGGAGGCGGCAACACTGGCAATGCCT
TGACCGCCGCTGCTCGTTTGGGCCTTCGCCCAAGGATCATATCCAAGGTATCCAATGACC
CACAAGGAAGAAATATTCTCAAGGAGCTGCAAGATGATGGGGTCGACACCTCTCATATCC
TGGTTGCAGAGGAGGGGAATTCACCTTTCACCTATATAATTGTTGACAACCAGACGTAAC
TCACTCATTTTCTACCTACTCTACATGTTCATTAGATATATATATATGTCCTCATGTTTG
TACAACTAGCTAAGTACCCATCTGTTGCAATTGCAACGCAACTTTAAACTTGACAAGTTC
TACATAATCCTTTTAAGAGATGATATATACTCCATTCCCAACTAAGCATAACATTCCTAA
AAGAAGCAACATATGCAAATCTTTCTTCTAAACAGATGCCCCTTGACTTATTTTAAGTGA
AGTACACCCTTTTGGTCACTTGCTTACCAATGGATATGCATTTACAGTTTATTCATTGGT
ATGATACAATGTACATATCACTTTGGTTCACGTCCTGATGTTAAAAGTGTCCCCTTTTTT
TATCTCTTTTTTAAAAATAATCTTACCGTTCAT

consensusID : consensus_13343#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [GGGACACTTTTAACATCAGGACGTGAACCAAAGTGATATGTACATTGTATCATACCAATGAATAAACTGTAAATGCATATCCATTGGTAAGCAAGTGACCAAAAGGGTGTACTTCACTTAAAATAAGTCAAGGGGCATCTGTTTAGAAGAAAGATTTGCATATGTTGCTTCTTTTAGGAATGTTATGCTTAGTTGGGAATGGAGTATATATCATCTCTTAAAAGGATTATGTAGAACTTGTCAAGTTTAAAGTTGCGTTGCAATTGCAACAGATGGGTACTTAGCTAGTTGTACAAACATGAGGACATATATATATATCTAATGAACATGTAGAGTAGGTAGAAAATGAGTGAGTTACGTCTGGTTGTCAACAATTATATAGGTGAAAGGTGAATTCCCCTCCTCTGCAACCTGAAAATTGATGCGGCATCCATGATAATTATTACTGGTAGAAAAGAAGAAAAGGCATAGTAAGTTAAAGTAATTAGTACCAGGATATGAGAGGTGTCGACCCCATCATCTTGCAGCTCCTTGAGAATATTTCTTCCTTGTGGGTCATTGGATACCTGGTAGTGCAGGCTTTCGTAAATAGGAGTAATAATTGAATTGAAGGAGGAGCAAGTGAAGTGGGTAGTACCTTGGATATGATCCTTGGGCGAAGGC]

[+] EMBL CA766168             [GGGACACTTTTAACATCAGGACGTGAACCAAAGTGATATGTACATTGTATCATACCAATGAATAAACTGTAAATGCATATCCATTGGTAAGCAAGTGACCAAAAGGGTGTACTTCACTTAAAATAAGTCAAGGGGCATCTGTTTAGAAGAAAGATTTGCATATGTTGCTTCTTTTAGGAATGTTATGCTTAGTTGGGAATGGAGTATATATCATCTCTTAAAAGGATTATGTAGAACTTGTCAAGTTTAAAGTTGCGTTGCAATTGCAACAGATGGGTACTTAGCTAGTTGTACAAACATGAGGACATATATATATATCTAATGAACATGTAGAGTAGGTAGAAAATGAGTGAGTTACGTCTGGTTGTCAACAATTATATAGGTGAAAGGTGAATTCCCCTCCTCTGCAACCTGAAAATTGATGCGGCATCCATGATAATTATTACTGGTAGAAAAGAAGAAAAGGCATAGTAAGTTAAAGTAATTAGTACCAGGATATGAGAGGTGTCGACCCCATCATCTTGCAGCTCCTTGAGAATATTTCTTCCTTGTGGGTCATTGGATACCTGGTAGTGCAGGCTTTCGTAAATAGGAGTAATAATTGAATTGAAGGAGGAGCAAGTGAAGTGGGTAGTACCTTGGATATGATCCTTGGGCGAAGGC]




>consensus_13343#3
GGGACACTTTTAACATCAGGACGTGAACCAAAGTGATATGTACATTGTATCATACCAATG
AATAAACTGTAAATGCATATCCATTGGTAAGCAAGTGACCAAAAGGGTGTACTTCACTTA
AAATAAGTCAAGGGGCATCTGTTTAGAAGAAAGATTTGCATATGTTGCTTCTTTTAGGAA
TGTTATGCTTAGTTGGGAATGGAGTATATATCATCTCTTAAAAGGATTATGTAGAACTTG
TCAAGTTTAAAGTTGCGTTGCAATTGCAACAGATGGGTACTTAGCTAGTTGTACAAACAT
GAGGACATATATATATATCTAATGAACATGTAGAGTAGGTAGAAAATGAGTGAGTTACGT
CTGGTTGTCAACAATTATATAGGTGAAAGGTGAATTCCCCTCCTCTGCAACCTGAAAATT
GATGCGGCATCCATGATAATTATTACTGGTAGAAAAGAAGAAAAGGCATAGTAAGTTAAA
GTAATTAGTACCAGGATATGAGAGGTGTCGACCCCATCATCTTGCAGCTCCTTGAGAATA
TTTCTTCCTTGTGGGTCATTGGATACCTGGTAGTGCAGGCTTTCGTAAATAGGAGTAATA
ATTGAATTGAAGGAGGAGCAAGTGAAGTGGGTAGTACCTTGGATATGATCCTTGGGCGAA
GGC

consensusID : consensus_13343#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [ATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTCGTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGNCCACGACCTCCTCGNCCTCGCCGCCGCCACCGACCATGGGCTCCGCGCCGCTTCTTCTCAAACCTCCGTCGTGCTTGNTGCGGCGCGTCTCGCGGNTACTCGCACGTCGCTCTTCCACCCGCGCAAGTCGAGCTACGTNAAGTCAGGAGGGGAAAATGGATGCTTACGCG]

[+] EMBL OSS15007A            [ATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTCGTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGNCCACGACCTCCTCGNCCTCGCCGCCGCCACCGACCATGGGCTCCGCGCCGCTTCTTCTCAAACCTCCGTCGTGCTTGNTGCGGCGCGTCTCGCGGNTACTCGCACGTCGCTCTTCCACCCGCGCAAGTCGAGCTACGTNAAGTCAGGAGGGGAAAATGGATGCTTACGCG]




>consensus_13343#4
ATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTCGTGGCGATGACGA
TGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACACCAAGACGNCCAC
GACCTCCTCGNCCTCGCCGCCGCCACCGACCATGGGCTCCGCGCCGCTTCTTCTCAAACC
TCCGTCGTGCTTGNTGCGGCGCGTCTCGCGGNTACTCGCACGTCGCTCTTCCACCCGCGC
AAGTCGAGCTACGTNAAGTCAGGAGGGGAAAATGGATGCTTACGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13343#0      AAGCCATGGATGGATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTC 60
consensus_13343#4      -------------ATGGCCCTCTATCTGAGTCAGCTGCATCTCATCTGCATTCCTTCCTC 47
consensus_13343#2      ------------------------------------------------------------
consensus_13343#1      ------------------------------------------------------------
consensus_13343#3      ------------------------------------------------------------
                                                                                   

consensus_13343#0      GTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACA 120
consensus_13343#4      GTGGCGATGACGATGGTACGCATCATCGGCCCAAGTCCAGCTCAATCCTCCTCACCAACA 107
consensus_13343#2      ----------------------------GCCCAAGTCCAGCTCAATCCTCCTCACCAACA 32
consensus_13343#1      ------------------------------------------------------------
consensus_13343#3      ------------------------------------------------------------
                                                                                   

consensus_13343#0      CCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCC 180
consensus_13343#4      CCAAGACGNCCACGACCTCCTCGNCCTCGCCGCCGCC-ACCGACCATGGGCTCCGC-GCC 165
consensus_13343#2      CCAAGACGACCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCC 92
consensus_13343#1      ---------CCACGACCTCCTCGCCCTCGCCGCCGCCCACCGACCATGGCCTCCGCCGCC 51
consensus_13343#3      -------------------------------------------------------GGGAC 5
                                                                                * *

consensus_13343#0      GCTTCTTCCTCCAAACCTC---CCGTCGTGCT-TGGCTGCGGCGCCGTCTCCGCGGACTA 236
consensus_13343#4      GCTTCTTC--TCAAACCTC---C-GTCGTGCT-TGN-TGCGGCGC-GTCTC-GCGGNTAC 215
consensus_13343#2      GCTTCTTCCTCCAAACCTC---CCGTCGTGCT-TGGCTGCGGCGCCGTCTCCGCGGACTA 148
consensus_13343#1      GCTTCTTCCTCCAAACCTC---CCGTCGTGCT-TGGCTGCGGCGCCGTCTCCGCGGACTA 107
consensus_13343#3      ACTTTTAACATCAGGACGTGAACCAAAGTGATATGTACATTGTATCATACCAATGAATAA 65
                        *** *     **   *     *    *** * **      *     *  *   *     

consensus_13343#0      CCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGAC--AAGATCCGAAGCCTAACGCTC 294
consensus_13343#4      TCGCACGTCGCTCTTCCACCCGCGCAAGTCGAGCTACGTNAAGTCAGGAGGGGAAAATGG 275
consensus_13343#2      CCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGAC--AAGATCCGAAGCCTAACGCTC 206
consensus_13343#1      CCTCGCCACCGTCGCCTCCTTCCCCAACCCCGACGAC--AAGATCCGAAGCCTAACGCTC 165
consensus_13343#3      ACT-GTAAATG-CATATCCATTGGTAAG-CAAGTGACCAAAAG---GGTGTACTTCACTT 119
                        *          *     *      **  *     **   *     *  *          

consensus_13343#0      AAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTT 354
consensus_13343#4      ATGCTTACGCG------------------------------------------------- 286
consensus_13343#2      AAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTT 266
consensus_13343#1      AAGGTCCAGGGAGGCGGCAACACTGGCAATGCCTTGACCGCCGCTGCTCGTTTGGGCCTT 225
consensus_13343#3      AAAAT-AAGTCAAGGGGCATC--------TGTTTAGAAGAAAGATTTGCATATGTTGCTT 170
                       *   *   *                                                   

consensus_13343#0      CGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAG 414
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      CGCCCAAGGATCATATCCAAGGTATCCAATGACCCACAAGGAAGAAATATTCTCAAGGAG 326
consensus_13343#1      CGCCCAAGGATCATATCCAAGG-------------------AAGAAATATTCTCAAGGAG 266
consensus_13343#3      CTTTTAGGAATGTTATGCTTAGTTGGGAATG---------GAGTATATATCATCTCTTAA 221
                                                                                   

consensus_13343#0      CTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCT 474
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      CTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCT 386
consensus_13343#1      CTGCAAGATGATGGGGTCGACACCTCTCATATCCTGGTTGCAGAGGAGGGGAATTCACCT 326
consensus_13343#3      AAGGATTATGTAGAACTTGTCAAGTTTAAAGTTGCG-TTGCAATTGCAACAGATGGGT-- 278
                                                                                   

consensus_13343#0      TTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGT 534
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      TTCACCTATATAATTGTTGACAACCAGACGTAACTCACTCATTTTCTACCTACTCTACAT 446
consensus_13343#1      TTCACCTATATAATTGTTGACAACCAGACGAAAACTCGTACTTGTATTCACACTCCTGGT 386
consensus_13343#3      ---ACTTAGCTAGTTGT--ACAAACATGAGGACATATATATATATCTAATGAACATGTAG 333
                                                                                   

consensus_13343#0      TATCCTCCTATGGTCCCTGAAGAGCTCACACAAG--AAAACTTGTTTGCCGCTTTAGACG 592
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      GTTCATTAGATATATATATATGTCCTCATGTTTG--TACAACTAGCTAAGTACCCATCTG 504
consensus_13343#1      TATCCTCCTATGGTCCCTGAAGAGCTCACACAAG--AAAACTTGTTTGCCGCTTTAGACG 444
consensus_13343#3      AGTAGGTAGAAAATGAGTGAGTTACGTCTGGTTGTCAACAATTATATAGGTGAAAGGTGA 393
                                                                                   

consensus_13343#0      GTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTT-TACTAGTTGCTGAA 651
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      TTGCAATTGCAACGCAACTTTAAACTTGACAAGTTCTACATAATC-CTTTTAAGAGATGA 563
consensus_13343#1      GTGCTGACATTGTATATTTTGATGTCAGATTGCATGAAACTGCTT-TACTAGTTGCTGAA 503
consensus_13343#3      ATTCCCCTCCTCTGCAACCTGAAAATTGATGCGGCATCCATGATAATTATTACTGGTAGA 453
                                                                                   

consensus_13343#0      GAGGCAAGCCAAAGAAAACTTCCTATTTTGATTGATGCCGAACG---GAAGAGGGATGGA 708
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      TATATACTCCATTCCCAACTAAGCATAAC-ATTCCTAAAAGAAG---CAACATATGCAAA 619
consensus_13343#1      GAGGTAATATTTTCCTGGCACAAAATTTTATCTTCTTATAGAGGATCTTGCAAATATAAA 563
consensus_13343#3      AAAGAAGAAAAGGCATAGTAAGTTAAAGTAATTAGTACCAGGATA--TGAGAGGTGTCGA 511
                                                                                   

consensus_13343#0      TTGGACGAGCTTC----TCAATTTCGCATCTTATGTTGTATGCTCTGCAAAATTTCC-TC 763
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      TCTTTCTTCTAAA----CAGATGCCCCTTGACTTATTTTAAGTGAAGTACACCCTTT-TG 674
consensus_13343#1      TGCCTACTCTCTG----TTTTTAATATTTTTTTTGGGTAGGGGCACTCAAATTTCCCATT 619
consensus_13343#3      CCCCATCATCTTGCAGCTCCTTGAGAATATTTCTTCCTTGTGGGTCATTGGATACCTGGT 571
                                                                                   

consensus_13343#0      AGGCTTGGACAGGAGCCTCATCAACACCGGTTGCTTTGGTGTCCATGCTTTTAAGATTGC 823
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      GTCACTTGCTTACCAATGGATATGCATTTACAGTTTATTCATTGGTATGATACAATGTAC 734
consensus_13343#1      TGCGTTTAGTGGAAACTATTAGAGTTCTTAGAACATGAATTGTCACTTACTAAAAGTTTA 679
consensus_13343#3      AGTGCAGGCTTTCGTAAATAGGAGTAATAATTGAATTGAAGGAGGAGCAAGTGAAG-TGG 630
                                                                                   

consensus_13343#0      CTAATATCAAGTTTATTATTGTAACC--CTTGGAGAAAAGGGATGCTTGATGCTTGAAAG 881
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      ATATCACTTTGGTTCACGTCCTGATG--TTAAAAGTGTCCCCTTTTTTTATCTCTTTTTT 792
consensus_13343#1      TTCCAGTTCTATACAACTTAATGGGCAACTGATACCATACATAGGAATGTTTTTTTTCCT 739
consensus_13343#3      GTAGTACCTTGGATATGATCCTTGGG---CGAAGGC------------------------ 663
                                                                                   

consensus_13343#0      AAGCACAACAGATGCTTCTGAGGCAGAGGAAATAGAT----------------------- 918
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      AAAAATAATCTTACCGTTCAT--------------------------------------- 813
consensus_13343#1      ATTCGGAATTCCACTCTTTCTACATGTATGTCTGGGAATATCACTATGAATAGGAAAGCT 799
consensus_13343#3      ------------------------------------------------------------
                                                                                   

consensus_13343#0      ------------------------------------------------------------
consensus_13343#4      ------------------------------------------------------------
consensus_13343#2      ------------------------------------------------------------
consensus_13343#1      GCCATGTCCAATTCGTTAATATATAACATATGCAGTGTCAATGCCATGTGTAAGCCTTTT 859
consensus_13343#3      ------------------------------------------------------------
                                                                                   

consensus_13343#0      -------------------------
consensus_13343#4      -------------------------
consensus_13343#2      -------------------------
consensus_13343#1      TTCTACACACCTGTAGCATTTTTTT 884
consensus_13343#3      -------------------------