|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1694 fasta sequence
[CGGCGGCGACGCGGTGCTGTTCATCGGCGACCTGTCGTACGCGGACAACCACCCGGGGCACGACAACAACCGGTGGGACACGTGGGCGCGGTTCGTGGAGCGGAGCGTGGCGTACCAGCCGTGGATCTGGACGACGGGGAACCACGAGCTGGACTTCGCGCCGGAGCTGGGGGAGACGACGCCGTTCAAGCCGTTCACGAACAGGTACCCGACGCCGTTCGGGGCGTCGGGGAGCACGCGGCCGCTGTGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTACGGCAAGTACACGCCGCAGTGGAGGTGGTTGGAGGGGGAGCTGAGGCGCGTGGACAGGGCGGTGACGCCATGGCTGATCGTGTGCGTGCACTCGCCGTGGTACAGCAGCAACGGATACCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACGCCAAGGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAACGTGGCGTACGACATCGCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGTGTACATCAACATCGGCGACGGGGGGAACATCGAGGGGCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCAAGGCACGCTGCAGATCGTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGACGGCGTCAAGGTCGTCGCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCCTTAATTTCCTACGGCCTACTTCCTCTGTCATGTAAAAAACCAATCTATACTAGTATAGGATATGATATATTCTAGTACTACGAATATAGATATACATCTATTCAGATTCATCGTATAAGAATATGTCGCATCCGATTCTAGATTCGTTTTCCGCGGGACGGAGAAAATACCTGCTTAATTTTTTCTTTATTACTAGTACTTTTCTTTTTCTAGATTTCGACCTGAATTCTATTTAGTACGAATGCATCAACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCATTCGGTTCTGTTTGGAGTTTGCTAGTATAATATATTCTTGGTTCTGTTTGGAGTTTGCTATAATATATTCTTTCTTGACGAATTATCTCCATTCGTAAGCGTGCGTTATCCTCGCCTCAACTAATATTGGAATTACAGTTCTTCTGTCCAGAATAGTAGCTTGGCTATCCCTTTGTCTTTTGCTCTGCCGAATAAAACAGCAACTGCAGTTGTTACACAATTTTTCTAAAAAAATCTTAGTCCAAATTCCGAAACAATTCATTCTACTACTTGGGACCTGGGAGTGGAAAAGCAGTTCTGACTGAATAATTCATACGCGTGATAAATTGGGATATTGAGAGCCGTATAGCGAATCAGAATTTTGATATAACGTACTGAATGAACAAGAATGACCTCTGTATTGGGCATATCCGCATATGGCAATTTGTCGACCATCATGGAACAGTTTGATCAAGTTGATGGCATGCGTTTTTAGAGAAAGTTGATGCAATGCACTGGAAATGTAATGTTGTACTCCAAACAGAATTGGGCAAGCCCTGATATGCTATTCCGCC]
[-] EMBL CB633866 [CGGCGGCGACGCGGTGCTGTTCATCGGCGACCTGTCGTACGCGGACAACCACCCGGGGCACGACAACAACCGGTGGGACACGTGGGCGCGGTTCGTGGAGCGGAGCGTGGCGTACCAGCCGTGGATCTGGACGACGGGGAACCACGAGCTGGACTTCGCGCCGGAGCTGGGGGAGACGACGCCGTTCAAGCCGTTCACGAACAGGTACCCGACGCCGTTCGGGGCGTCGGGGAGCACGCGGCCGCTGTGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTACGGCAAGTACACGCCGCAGTGGAGGTGGTTGGAGGGGGAGCTGAGGCGCGTGGACAGGGCGGTGACGCCATGGCTGATCGTGTGCGTGCACTCGCCGTGGTACAGCAGCAACGGATACCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACGCCAAGGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAACGTGGCGTACGACATCGCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGTGTACATCAACATCGGCGACGGGGGGAACATCGAGGGGCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCAAGGCACGC ]
[+] EMBL CA766800 [ GGGGCTCGCCGACGACTTCCGGTGGCCGCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGCAGATCGTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGACGGCGTCAAGGTCGTCGCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCCTTAATTTCCTACGGCCTACTTCCTCTGTCATGTAAAAAACCAATCTATACTAGTATAGGATATGATATATTCTAGTACTACGAATATAGATATACATCTATTCAGATTCATCGTATAAGAATATGTCGCATCCGATTCTAGATTCGTTTTCCGCGGGACGGAGAAAATACCTGCTTAATTTTTTCTTTATTACTAGTACTTTTCTTTTTCTAGATTTCGACCTGAATTCTATTTAGTACGAATGCATCAACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCATTCGGTTCTGTTTGGAGTT ]
[+] EMBL AK119972 [ ACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCATTCGGTTCTGTTTGGAGTTTGCTAGTATAATATATTCTTGGTTCTGTTTGGAGTTTGCTATAATATATTCTTTCTTGACGAATTATCTCCATTCGTAAGCGTGCGTTATCCTCGCCTCAACTAATATTGGAATTACAGTTCTTCTGTCCAGAATAGTAGCTTGGCTATCCCTTTGTCTTTTGCTCTGCCGAATAAAACAGCAACTGCAGTTGTTACACAATTTTTCTAAAAAAATCTTAGTCCAAATTCCGAAACAATTCATTCTACTACTTGGGACCTGGGAGTGGAAAAGCAGTTCTGACTGAATAATTCATACGCGTGATAAATTGGGATATTGAGAGCCGTATAGCGAATCAGAATTTTGATATAACGTACTGAATGAACAAGAATGACCTCTGTATTGGGCATATCCGCATATGGCAATTTGTCGACCATCATGGAACAGTTTGATCAAGTTGATGGCATGCGTTTTTAGAGAAAGTTGATGCAATGCACTGGAAATGTAATGTTGTACTCCAAACAGAATTGGGCAAGCCCTGATATGCTATTCCGCC]
consensusID : consensus_13347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1600 fasta sequence
[AGAGTAGCACAAGAAGCAGAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG-GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC-TCGCCGGAGAAGC-TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA-CTTCAACTAC-ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT-CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA-CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAA]
[+] EMBL AK066273 [AGAGTAGCACAAGAAGCAGAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGAGAAGC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGTCTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGTCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAAGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAA ]
[+] EMBL AK058368 [ GAGTAGCACAAGAAGCAGAGTGCGGCTAGTTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGAGAAGC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCT ]
[+] EMBL AB066561 [ GAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGAGAAGC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACG CGTCCCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAG CGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAA ]
[+] EMBL AU065845 [ GAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGGGGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGGNGGTGACGAGCGANTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCNTGCCGCCGGGCTACAATNCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTNTCGTGGGTNACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGCTTCGCCGGAGAAGCTTGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTANTTTAAATTACAACTTCCGGTTTCATCCACCANTTCAACCTtaac ]
[+] EMBL CB655358 [ TCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGCGCCGG GGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGACGCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTGGGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGCAACACGGTCAGGTACGGGAGC TCGCCGGATATTC TGGACCGCGCGGCGGAGGGGAGCCACACGAGGTACGACTA CTTCAACTAC ACCTCCGGCTTCATCCACCACTGCACCCTCACCGGCCTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACAC ]
[+] EMBL CF323881 [ TCGATCACACCGTCCGTACCTTCTCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGTGACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGCGACGCCGT CCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAACAACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATCTGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTCAAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACACCGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGT ]
[-] EMBL CB674911 [ GCAGCACGGAGCCGTTCTGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTAGGCAATAACAAATACTACTAGCAGAGTCTATCT ]
[-] EMBL CB655359 [ CCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTACGGCAAGTACA CGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGCAAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAACTACCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAAGGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAACATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGTGTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCCGCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTTCGGCCACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTATGCAATAACAAATACTACTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAA]
consensusID : consensus_13347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[ATCCNCGGATTTTGGCCNCNATCCNNGAAAACCAGGANGNGGGGGTTCCACCGTTGCNAAGTACCGGGTTTTGGTNANATTNCGGGAAAANGAAAANACNAAAATGGGGGGGGGAGGGGGTCATTGGGCGGGTTTTTNNANCAGGGGAAGGGGTTCCCGGCNAAATTCNAATTGAGGGCACCGGGGGTTGGGAAACTGAATAAAAACTTGTGACGGCAAGGGACGCCGGCGGCGAAGTGGACGCCCCGGTTACATCACGATCGCGACGGGGGGGAACATCGAGGGGATCGCCAACAAATTCACGGTGCCGCAGCCGGCTATTCGGCGTTCCGGGAGGCCAGCTTTCGGCCAACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTA]
[-] EMBL BE229096 [ATCCNCGGATTTTGGCCNCNATCCNNGAAAACCAGGANGNGGGGGTTCCACCGTTGCNAAGTACCGGGTTTTGGTNANATTNCGGGAAAANGAAAANACNAAAATGGGGGGGGGAGGGGGTCATTGGGCGGGTTTTTNNANCAGGGGAAGGGGTTCCCGGCNAAATTCNAATTGAGGGCACCGGGGGTTGGGAAACTGAATAAAAACTTGTGACGGCAAGGGACGCCGGCGGCGAAGTGGACGCCCCGGTTACATCACGATCGCGACGGGGGGGAACATCGAGGGGATCGCCAACAAATTCACGGTGCCGCAGCCGGCTATTCGGCGTTCCGGGAGGCCAGCTTTCGGCCAACGCCACGCTGGAGATCAAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTCGCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTATTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATTCTTCTTCTTCTTTAGCTTTGGATAATAAATACTCCTACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13347#1 AGAGTAGCACAAGAAGCAGAGTGCGGCTAGCTCACAGTCACCATGGGGATGCTGCGGTGG 60
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 GGAGCTCACCTCCTCCTCCTCCTCCTCGCCGCGGCGACGTGGACGTGCGCCGGCGCCGGC 120
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 GCCGGGGTGACGAGCGAGTACCGGCGGAAGCTGGAGGCGACGGTGGACATGCCGCTCGAC 180
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 GCCGACGTCTTCCGCGTGCCGCCGGGCTACAATGCTCCGCAGCAGGTGCACATCACGCTG 240
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 GGGGACCAGACGGGGACGGCGATGACGGTGTCGTGGGTGACGGCGAACGAGCTGGGGAGC 300
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 AACACGGTCAGGTACGGGAGCTCGCCGGAGAAGCTGGACCGCGCGGCGGAGGGGAGCCAC 360
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 ACGAGGTACGACTACTTCAACTACACCTCCGGCTTCATCCACCACTGCACCCTCACCGGC 420
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 CTCACCCACGCCACCAAGTACTACTACGCCATGGGCTTCGATCACACCGTCCGTACCTTC 480
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 TCCTTCACCACGCCGCCCAAGCCCGCTCCCGACGCCCCCTTCAAGTTCGGCCTCATCGGT 540
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ------------------------------------------------------------
consensus_13347#1 GACCTCGGGCAGACGTTCGACTCGAACAGCACGCTGGCGCACTACGAGGCCAACGGCGGC 600
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 -----------------------------------------------------CGGCGGC 7
consensus_13347#1 GACGCCGTCCTCTTCGTCGGCGACCTCTCCTACGCCGACAACTACCCTCTCCACGACAAC 660
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 GACGCGGTGCTGTTCATCGGCGACCTGTCGTACGCGGACAACCACCCGGGGCACGACAAC 67
consensus_13347#1 AACCGCTGGGACACGTGGGCGCGCTTCGTCGAGCGCAGCGTCGCGTACCAGCCATGGATC 720
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 AACCGGTGGGACACGTGGGCGCGGTTCGTGGAGCGGAGCGTGGCGTACCAGCCGTGGATC 127
consensus_13347#1 TGGACCGCCGGCAACCACGAGCTGGACTACGCGCCGGAGCTGGGCGAGACGGTCCCCTTC 780
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TGGACGACGGGGAACCACGAGCTGGACTTCGCGCCGGAGCTGGGGGAGACGACGCCGTTC 187
consensus_13347#1 AAGCCCTTCACCCACCGGTACCCGACGCCGTACCGCGCCGCCGGCAGCACGGAGCCGTTC 840
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 AAGCCGTTCACGAACAGGTACCCGACGCCGTTCGGGGCGTCGGGGAGCACGCGGCCGCTG 247
consensus_13347#1 TGGTACTCCGTCAAGATCGCCTCCGCGCACGTCATCGTGCTGGCCTCCTACTCCGCCTAC 900
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TGGTACTCGGTGAGGATGGCGTCGGCGCACGTGATCGTGCTGGCGTCGTACGCGGCGTAC 307
consensus_13347#1 GGCAAGTACACGCCGCAGTGGACATGGCTGCAGGAGGAGCTCGCCACCCGCGTCGACCGC 960
consensus_13347#2 -------------------------ATCCNCGGATTTTGGCCNCNATCCNNGAAAACCAG 35
consensus_13347#0 GGCAAGTACACGCCGCAGTGGAGGTGGTTGGAGGGGGAGCT---GAGGCGCGTGGACAGG 364
* * * * * **
consensus_13347#1 AAGCTCACCCCGTGGCTCATCGTGCTCATGCACTCG-CCGTGGTACAACAGCAACAACTA 1019
consensus_13347#2 GANGNGG----GGGTTCCACCGTTGCNAAGTACCGGGTTTTGGTNANATTNCGGGAAA-A 90
consensus_13347#0 GCGGTGACGCCATGGCTGATCGTGTGCGTGCACTCG-CCGTGGTACAGCAGCAACGGATA 423
* * *** * ** * **** * *
consensus_13347#1 CCACTACATGGAGGGGGAGACGATGCGCGTCCAGTTCGAGCGGTGGCTCGTCGACGCCAA 1079
consensus_13347#2 NGAAAANACNAAAATGGGGGGGGGAGGGGGTCA--TTGGGCGG--GTTTTTNNAN--CAG 144
consensus_13347#0 CCACTACATGGAGGGGGAGTCGATGCGCGTGGAGTTCGAGCGGTGGCTCGTCGACGCCAA 483
* * * * ** * * * * * * * **** * * * * **
consensus_13347#1 GGTGGACGTGGTGCTCGCCGGCCACGTCCACTCGTACGAGCGCAGCCGGAGGTTCGCGAA 1139
consensus_13347#2 GG--GAAGGGGTTC---CCGGCNAAATTCNAAT---TGAGGGCA-CCGGGGGTTGGGAAA 195
consensus_13347#0 GGCCGACGTGGTGCTCGCCGGGCACGTCCACTCGTACGAGCGGACGCGGCGGGTGTCGAA 543
** ** * *** * **** * * * *** * * *** ** * **
consensus_13347#1 CATCGACTACAACATCGTGAACGGCAAGGCGACGCCGGCGGCGAACGTGGACGCGCCGGT 1199
consensus_13347#2 C--TGAATAAAAACTTGTGA-CGGCAAGG-GACGCCGGCGGCGAA-GTGGACGCCCCGGT 250
consensus_13347#0 CGTGGCGTACGACATCGCCAACGGGATGGCGACGCCGGTGTTCAACCGGTCGGCGCCGGT 603
* * ** * * * * *** * ** ******** * ** * ** *****
consensus_13347#1 GTACATCACGATCGGCGACGGGGGGAACATCGAGGGGATCGCCAACAACTTCACGGTGCC 1259
consensus_13347#2 -TACATCACGATCGCGACGGGGGGGAACATCGAGGGGATCGCCAACAAATTCACGGTGCC 309
consensus_13347#0 GTACATCAACATCGGCGACGGGGGGAACATCGAGGGGCTCGCCGACGACTTCCGGTGGCC 663
******* **** ****************** ***** ** * *** * ***
consensus_13347#1 GCAGCCGGCCTACTCGGCGTTCCGGGAGGCCAGCTT-CGGCCA-CGCCACGCTGGAGATC 1317
consensus_13347#2 GCAGCCGGC-TATTCGGCGTTCCGGGAGGCCAGCTTTCGGCCAACGCCACGCTGGAGATC 368
consensus_13347#0 GCAGCCGGACTACTCGGTGTTCCGGGAGGCCAGCTT-CGGCCA-AGGCACGCTGCAGATC 721
******** ** **** ****************** ****** * ******* *****
consensus_13347#1 AAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTC 1377
consensus_13347#2 AAGAACCGGACGCACGCGCACTACGCGTGGCACCGCAACCACGACGGCGCCAAGGCCGTC 428
consensus_13347#0 GTCAACCGGACGCACGCCTTCTACGAGTGGCACCGCAACAGCGACGGCGTCAAGGTCGTC 781
************** ***** ************* ******** ***** ****
consensus_13347#1 GCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTA 1437
consensus_13347#2 GCCGACGCCGTCTGGCTCACCAACCGCTACTGGATGCCCACCAACGACGATGTATAATTA 488
consensus_13347#0 GCCGACCATGCCTGGTTCACCAACCGATACTGGTTTCCCACCGACACCAACTAGCTACCC 841
****** * **** ********** ****** * ****** ** * * *
consensus_13347#1 TTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATT 1497
consensus_13347#2 TTAATCGACTCCAACCATCTCAAACTTCTTAATTTGTATCACTGCTATGCTATTGCCATT 548
consensus_13347#0 TTAATTTCCTACGGCCTACTTCCTCTGTCATGTAAAAAACCAATCTATACTAGTATAGGA 901
***** ** * ** ** ** * * * **** *** *
consensus_13347#1 CTTCTTCTTCTTTAG--CTTTGGATA-ATAAATACTCCTACTATGCAATAACAAATACTA 1554
consensus_13347#2 CTTCTTCTTCTTTAG--CTTTGGATA-ATAAATACTCCTACTA----------------- 588
consensus_13347#0 TATGATATATTCTAGTACTACGAATATAGATATACATCTATTCAGATTCATCGTATAAGA 961
* * * * *** ** * *** * * **** *** *
consensus_13347#1 CTAGCAGAGTCTATCTTGTTAAGCCGTGAGATAATTAATCCCCAAA-------------- 1600
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 ATATGTCGCATCCGATTCTAGATTCGTTTTCCGCGGGACGGAGAAAATACCTGCTTAATT 1021
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TTTTCTTTATTACTAGTACTTTTCTTTTTCTAGATTTCGACCTGAATTCTATTTAGTACG 1081
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 AATGCATCAACAGCAAAACAGATTAGCACACTAGAGAGGGAGATGGATTAATAAAATCAT 1141
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TCGGTTCTGTTTGGAGTTTGCTAGTATAATATATTCTTGGTTCTGTTTGGAGTTTGCTAT 1201
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 AATATATTCTTTCTTGACGAATTATCTCCATTCGTAAGCGTGCGTTATCCTCGCCTCAAC 1261
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TAATATTGGAATTACAGTTCTTCTGTCCAGAATAGTAGCTTGGCTATCCCTTTGTCTTTT 1321
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 GCTCTGCCGAATAAAACAGCAACTGCAGTTGTTACACAATTTTTCTAAAAAAATCTTAGT 1381
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 CCAAATTCCGAAACAATTCATTCTACTACTTGGGACCTGGGAGTGGAAAAGCAGTTCTGA 1441
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 CTGAATAATTCATACGCGTGATAAATTGGGATATTGAGAGCCGTATAGCGAATCAGAATT 1501
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TTGATATAACGTACTGAATGAACAAGAATGACCTCTGTATTGGGCATATCCGCATATGGC 1561
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 AATTTGTCGACCATCATGGAACAGTTTGATCAAGTTGATGGCATGCGTTTTTAGAGAAAG 1621
consensus_13347#1 ------------------------------------------------------------
consensus_13347#2 ------------------------------------------------------------
consensus_13347#0 TTGATGCAATGCACTGGAAATGTAATGTTGTACTCCAAACAGAATTGGGCAAGCCCTGAT 1681
consensus_13347#1 -------------
consensus_13347#2 -------------
consensus_13347#0 ATGCTATTCCGCC 1694
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||