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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1980 fasta sequence
[TTTTCCCGCCCCCGCCAAAACCGCTGCCACGTCGTCGTCTCCCGCCAAAAAAAAAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCGTAAGCTTGGATTATCCAATTTATTTCTAAATTTTTTTTCTTGAGTTACCAAGTATCTGGTTGAATAATCAAGGAAAAAACATGATCAAATTTTAGATTCAAACAGTGCATTTTCTTGTGTGTTTAATCAACCAAGAAGAAACTTTGTAGGACTTTGGTGCAATGCAATCGGCAGTTGCAGTTTACATTTTTGATTTCTGAAGATATTTCTTTCAGTTTCTGAATTTTGACATCGATTTGGCATCCATTTGCATCACATGATGTTCTGAGTTGCTCTGAACAGATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGCAAGTTTTCACCTCCTCTATTGCACTTGTGCCATTCACACATTTGGAGATTTTTTTTTAAAAAAAGAACAATCTTACCATTTTGTTGTTAACTAAAAAAATGTGAAGGTGGGTGGATGAAGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTAAGAACACAGTTATTATGCAGAACAAATTGCTCAAAAATAGTTATGTAGAATTGCAACAACATTGGACCTTCATATATATTTTCATGATTGTTTGTATGTGTAAAATAGCAGAAACAATGTGTGTAACTAACTTCATGTGATTGTTTCAGGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTCAGGATCTCTGAATCTTCTCATGTTTCAACAAGCATTTCTGATGGCTATAGGTAGCTGAGTGCCTGATGTCTGAATGTTCGTGCAGGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGTGAGTATTCCATGATGAACTTCTCCAAGTGAAGAAGAAAAACAGGCACTGAATTATGTTGTTTTACTGTATGATCAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGGTGATCAAGTAAATTGAAAAATCAAATGATCTTACAAAATTTTGGTACTAACTTTGCTGCATAATACATATGTAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGTAAGTGGAGGAATTATTACATTTTGTCAATCTTGTAGAACTTTGACAATGAACAGTGCATTGCCACATGATCTGTTTTTTTTTTTCATTTGACAGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAGCCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCA]
[+] EMBL AK120881 [TTTTCCCGCCCCCGCCAAAACCGCTGCCACGTCGTCGTCTCCCGCCAAAAAAAAAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCGTAAGCTTGGATTATCCAATTTATTTCTAAATTTTTTTTCTTGAGTTACCAAGTATCTGGTTGAATAATCAAGGAAAAAACATGATCAAATTTTAGATTCAAACAGTGCATTTTCTTGTGTGTTTAATCAACCAAGAAGAAACTTTGTAGGACTTTGGTGCAATGCAATCGGCAGTTGCAGTTTACATTTTTGATTTCTGAAGATATTTCTTTCAGTTTCTGAATTTTGACATCGATTTGGCATCCATTTGCATCACATGATGTTCTGAGTTGCTCTGAACAGATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGCAAGTTTTCACCTCCTCTATTGCACTTGTGCCATTCACACATTTGGAGATTTTTTTTTAAAAAAAGAACAATCTTACCATTTTGTTGTTAACTAAAAAAATGTGAAGGTGGGTGGATGAAGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTAAGAACACAGTTATTATGCAGAACAAATTGCTCAAAAATAGTTATGTAGAATTGCAACAACATTGGACCTTCATATATATTTTCATGATTGTTTGTATGTGTAAAATAGCAGAAACAATGTGTGTAACTAACTTCATGTGATTGTTTCAGGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTCAGGATCTCTGAATCTTCTCATGTTTCAACAAGCATTTCTGATGGCTATAGGTAGCTGAGTGCCTGATGTCTGAATGTTCGTGCAGGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGTGAGTATTCCATGATGAACTTCTCCAAGTGAAGAAGAAAAACAGGCACTGAATTATGTTGTTTTACTGTATGATCAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGGTGATCAAGTAAATTGAAAAATCAAATGATCTTACAAAATTTTGGTACTAACTTTGCTGCATAATACATATGTAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGTAAGTGGAGGAATTATTACATTTTGTCAATCTTGTAGAACTTTGACAATGAACAGTGCATTGCCACATGATCTGTTTTTTTTTTTCATTTGACAGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAGCCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCA]
consensusID : consensus_13356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1453 fasta sequence
[GTTCCCTTTTTATTGAGAGGATCCCCTCCCTCGTGTCGACACGATCGTCCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACACAAGGAAAGATTTAGGCGTAAGC-TATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAATTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTTCCTTGTATACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGGTGTTGGACAGATGAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTGTCTGTAACGTCGAGAGGGAGAGATGTTGACGCTGGCTGAAAGCACAACACAAGCAGAGTGATATTATACTACTACTAGTAATTTACTTATTAAAAA]
[+] EMBL AK073939 [GTTCCCTTTTTATTGAGAGGATCCCCTCCCTCGTGTCGACACGATCGTCCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACACAAGGAAAGATTTAGGCGTAAGC TATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAATTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTTCCTTGTATACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGGTGTTGGACAGATGAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTGTCTGTAACGTCGAGAGGGAGAGATGTTGACGCTGGCTGAAAGCACAACACAAGCAGAGTG ]
[+] EMBL C26593 [ TGTCGACACGATCGTCCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTNAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGNGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCNTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGTCGGAGCTCACCGACCNNCCTGTCCGCGT ]
[+] EMBL CF280627 [ CCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACC ]
[+] EMBL AK060631 [ CAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACACAAGGAAAGATTTAGGCGTAAGC TATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAAAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAATTACATGGGAGAGGCTTT ]
[+] EMBL AF140496 [ GATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACTCAAGGAAAGATTTAGGCGT AGCTTATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATG ]
[+] EMBL CF326280 [ AAACAATCTCAGGGATACTTGGGGGTCTAATGCCGCACCCGGAGGCATCGTAATAAGGTGTTGAGGAGAGATGACGTTGAGTTGGACTAAGCTGCCCTGGGGTCACCACGGACTACAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAGTTACATGGGAGAGGCTTTGTTTCTTGTT ]
[+] EMBL AU166467 [ GCAGCGTAATAAGTTGTANAGGANAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCNCGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGNGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTNCAGCTTAATTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTTCCTTGTANACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGGTGTTGGNCAGATNAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTGTCTGTAACGTCGAGAGGGANAGATGTTGACGCTGGCTGNAAGCACAACNCAAGCAGAGTGATATTATACTACTACTAGTAATTTACTTATTAAAAA]
consensusID : consensus_13356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1057 fasta sequence
[AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGTGGGTGGATGAGGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAG-CCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACC-AAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCAATTACTGCTC]
[+] EMBL AK059796 [AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGTGGGTGGATGAGGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAG CCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACC AAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCAATTACTGCTC]
[+] EMBL CA766897 [ aaggggGATGCTCTTCCGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAG CCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCA ]
[+] EMBL BF475192 [ GAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTACAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAACAATCGTGGAGATCATTTCTAGCCTTGTGTGACATTAGCCCTCATGTCGTACGACAAatt ]
[+] EMBL AA751248 [ CACAGCGCGGCAAAGATAGCTGGAA SAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATAT CAGATC AACTGG ]
consensusID : consensus_13356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[TTTTTTTTTTTTGATACCAACAGATGCAACATACAACTAGGAAAACTGTACAAAGTTCAGTTTGTGCCTTTGTGGCATAGATACGCACATGATCCTTCAGTACAAGATGCAAAACATGCAGATTATCAGTGCAAGATGCAAATAGATAACCTTGAGCAGTAATTGCACGAACTATTATTATTGTTCTCGGAAGTACAAAACCTTTTAGTACAAACCCCCTTGTCTCGTCCTCT]
[+] EMBL CA760490 [TTTTTTTTTTTTGATACCAACAGATGCAACATACAACTAGGAAAACTGTACAAAGTTCAGTTTGTGCCTTTGTGGCATAGATACGCACATGATCCTTCAGTACAAGATGCAAAACATGCAGATTATCAGTGCAAGATGCAAATAGATAACCTTGAGCAGTAATTGCACGAACTATTATTATTGTTCTCGGAAGTACAAAACCTTTTAGTACAAACCCCCTTGTCTCGTCCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13356#0 -------TTTTCCCGCCCCCGCCAAAACCGCTGCCACGTCGTCGTCTCCCGCCAAAAAAA 53
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 GTTCCCTTTTTATTGAGAGGATCCCCTCCCTCGTGTCGACACGATCGTCCAAAATAGGGA 60
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCG 113
consensus_13356#2 AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCG 60
consensus_13356#1 AGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCA 120
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGG 173
consensus_13356#2 CAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGG 120
consensus_13356#1 ---GAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTT-TCGCATTCCAGAAAG 176
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCC 233
consensus_13356#2 CCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCC 180
consensus_13356#1 CGGACTAGGGCTCCCTCCAACTCCAACTCCAAGC----CCACTTCACAAACCCAACCGCC 232
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CTCGAGCAGGCCAAGAAATCGTAAGCTTGGATTATCCAATTTATTTCTAAATTTTTTTTC 293
consensus_13356#2 CTCGAGCAGGCCAAGAAATC---------------------------------------- 200
consensus_13356#1 GCCGCCGGAGCTCACCGACCGC-------------CCTGTCCGCGTCTA----------- 268
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 TTGAGTTACCAAGTATCTGGTTGAATAATCAAGGAAAAAACATGATCAAATTTTAGATTC 353
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ------------------------------------------------------------
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 AAACAGTGCATTTTCTTGTGTGTTTAATCAACCAAGAAGAAACTTTGTAGGACTTTGGTG 413
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ------------------------------------------------------------
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CAATGCAATCGGCAGTTGCAGTTTACATTTTTGATTTCTGAAGATATTTCTTTCAGTTTC 473
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ----------------CGCCGACGGCATCTTCGATCTCT--------------------- 291
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 TGAATTTTGACATCGATTTGGCATCCATTTGCATCACATGATGTTCTGAGTTGCTCTGAA 533
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ------------TCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCT----- 334
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CAGATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTA 593
consensus_13356#2 ---ATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTA 257
consensus_13356#1 ---GTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTA 391
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGCA 653
consensus_13356#2 CAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAG-- 315
consensus_13356#1 CAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAA-- 449
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 AGTTTTCACCTCCTCTATTGCACTTGTGCCATTCACACATTTGGAGATTTTTTTTTAAAA 713
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ------------------------------------------------------------
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 AAAGAACAATCTTACCATTTTGTTGTTAACTAAAAAAATGTGAAGGTGGGTGGATGAAGT 773
consensus_13356#2 ----------------------------------------------TGGGTGGATGAGGT 329
consensus_13356#1 ----------------------------------------------TGGGTTGATGAGGT 463
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTA 833
consensus_13356#2 GATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTA 389
consensus_13356#1 CATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTA 523
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CGTCGCTCATGATGCTCTTCCGTAAGAACACAGTTATTATGCAGAACAAATTGCTCAAAA 893
consensus_13356#2 CGTCGCTCATGATGCTCTTCCGTA------------------------------------ 413
consensus_13356#1 TGTTGCTCATGATGCACTGCCTTA------------------------------------ 547
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 ATAGTTATGTAGAATTGCAACAACATTGGACCTTCATATATATTTTCATGATTGTTTGTA 953
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ------------------------------------------------------------
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 TGTGTAAAATAGCAGAAACAATGTGTGTAACTAACTTCATGTGATTGTTTCAGGTATGCG 1013
consensus_13356#2 --------------------------------------------------------TGCG 417
consensus_13356#1 --------------------------------------------------------TGCC 551
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTCAGGATCTCTGAATCTTCTCAT 1073
consensus_13356#2 GACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGT---------------------- 455
consensus_13356#1 GATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTT--------------------- 590
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GTTTCAACAAGCATTTCTGATGGCTATAGGTAGCTGAGTGCCTGATGTCTGAATGTTCGT 1133
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 ------------------------------------------------------------
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GCAGGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTC 1193
consensus_13356#2 ------GAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTC 509
consensus_13356#1 -------AAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATC 643
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 TGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCG 1253
consensus_13356#2 TGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCG 569
consensus_13356#1 AGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACG 703
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGTGA-GTATTCCATGATGAA 1312
consensus_13356#2 GGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGG------------------- 610
consensus_13356#1 TGGATACACAAGGAAAGATTTAGGCGTAAGCTATGTTAAGGAAAAGCAACTCCAGGTCAA 763
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CTTCTC--CAAGTGAAGAAGAAAAACAGGCACTGAATTATGTTGTTTTACTGTATGATCA 1370
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 CATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGT 823
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GGAGAAGCAACTTAGAGTAAA-CATGGGGATCAGCAAGCTAAGGGAGA-----AGGTGAA 1424
consensus_13356#2 --AGAAGCAACTTAGAGTAAA-CATGGGGATCAGCAAGCTAAGGGAGA-----AGGTGAA 662
consensus_13356#1 GGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGC 883
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GGAGCATCAAGAGAAGGTGATCAAGTAAATTGAAAAATCAAATGATCTTACAAAATTTTG 1484
consensus_13356#2 GGAGCATCAAGAGAAG-------------------------------------------- 678
consensus_13356#1 TGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCG 943
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 GTACTAACTTTGCTGCATAATACATAT-----GTAGTTTCACAGCGCGGCAAAGATAGC- 1538
consensus_13356#2 ------------------------------------TTTCACAGCGCGGCAAAGATAGC- 701
consensus_13356#1 TATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCA 1003
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 --TGGAAGCAATCCTGTGGA--GTGGATGGAGAATGCCGACC-GTTGGATCGTTGGGTTT 1593
consensus_13356#2 --TGGAAGCAATCCTGTGGA--GTGGATGGAGAATGCCGACC-GTTGGATCGTTGGGTTT 756
consensus_13356#1 ACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGA--GTAAGCTGC 1061
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CTTGAAAAGTTTGAGGAAGGTTGCCACA-TGATGGTAAGTGGAGGAATTATTACATTTTG 1652
consensus_13356#2 CTTGAAAAGTTTGAGGAAGGTTGCCACA-TGATGG------------------------- 790
consensus_13356#1 CCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGT 1121
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 TCAATCTTGTAGAACTTTGACAATGAACAGTGCATTGCCACATGATCTGTTTTTTTTTTT 1712
consensus_13356#2 ------------------------------------------------------------
consensus_13356#1 GTGAGTGTGTG---CTTGTGTCATGGAATGTG-ATGCTTGTACGAGTTGTTACAGCTTAA 1177
consensus_13356#3 ------------------------------------------------------------
consensus_13356#0 CATTTGACAGGAAACCGCGATTAAAGATCGGATTCAGG-AGGGGCTGAAGAGGCAAAGCA 1771
consensus_13356#2 -----------AAACCGCGATTAAAGATCGGATTCAGG-AGGGGCTGAAGAGGCAAAGCA 838
consensus_13356#1 TTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTT 1237
consensus_13356#3 ---------------------------TTTTTTTTTTTTGATACCAACAGATGCAACATA 33
* ** * *
consensus_13356#0 GGTCGGACCCCAACCTTTCTGG-GGAGGATTCCGACTCATAATGGATCCTGTAATATCCA 1830
consensus_13356#2 GGTCGGACCCCAACCTTTCTGG-GGAGGATTCCGACTCATAATGGATCCTGTAATATCCA 897
consensus_13356#1 CCTTGTATACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGG 1297
consensus_13356#3 CAACTAGG--AAAACTGTACAA-AGTTCAGTTTGTGCCTTTGTGGCATAGATACGCACAT 90
** * * * * * * * * *
consensus_13356#0 GATCAAACTGG-GAAGAGAAAAAATTGTGGAG-ATCATTTCTAGCCTTGTGTGAGATTAG 1888
consensus_13356#2 GATCAAACTGG-GAAGAGAAAAAATTGTGGAG-ATCATTTCTAGCCTTGTGTGAGATTAG 955
consensus_13356#1 TGTTGGACAGATGAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTG 1357
consensus_13356#3 GATCCTTCAGTACAAGATGCAAAACA-TGCAG----ATTATCAGTGCAAGATGCAAATAG 145
* * * *** ** ** ** ** * *
consensus_13356#0 CCTC--ATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAG-GTT 1945
consensus_13356#2 CCTC--ATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAG-GTT 1012
consensus_13356#1 TCTGTAACGTCGAGAGGGAGAGATGTTGACGCTGGCTGAAAGCACAACACAAGCAGAGTG 1417
consensus_13356#3 ATA---ACCTTGAGCAGTAATTGCACGAACTATTATTATTGTTCTCGGAAGTACAAAACC 202
* * * * ** * * * *
consensus_13356#0 TTGTACTTCTGAGAACAATAATAATAGTTCGTGCA---------- 1980
consensus_13356#2 TTGTACTTCTGAGAACAATAATAATAGTTCGTGCAATTACTGCTC 1057
consensus_13356#1 ATATTATACTACTACTAGTAATT-TACTTATTAAAAA-------- 1453
consensus_13356#3 TTTTAGTACAAACCCCCTTGTCTCGTCCTCT-------------- 233
* * * * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||