These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1980 fasta sequence [TTTTCCCGCCCCCGCCAAAACCGCTGCCACGTCGTCGTCTCCCGCCAAAAAAAAAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCGTAAGCTTGGATTATCCAATTTATTTCTAAATTTTTTTTCTTGAGTTACCAAGTATCTGGTTGAATAATCAAGGAAAAAACATGATCAAATTTTAGATTCAAACAGTGCATTTTCTTGTGTGTTTAATCAACCAAGAAGAAACTTTGTAGGACTTTGGTGCAATGCAATCGGCAGTTGCAGTTTACATTTTTGATTTCTGAAGATATTTCTTTCAGTTTCTGAATTTTGACATCGATTTGGCATCCATTTGCATCACATGATGTTCTGAGTTGCTCTGAACAGATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGCAAGTTTTCACCTCCTCTATTGCACTTGTGCCATTCACACATTTGGAGATTTTTTTTTAAAAAAAGAACAATCTTACCATTTTGTTGTTAACTAAAAAAATGTGAAGGTGGGTGGATGAAGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTAAGAACACAGTTATTATGCAGAACAAATTGCTCAAAAATAGTTATGTAGAATTGCAACAACATTGGACCTTCATATATATTTTCATGATTGTTTGTATGTGTAAAATAGCAGAAACAATGTGTGTAACTAACTTCATGTGATTGTTTCAGGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTCAGGATCTCTGAATCTTCTCATGTTTCAACAAGCATTTCTGATGGCTATAGGTAGCTGAGTGCCTGATGTCTGAATGTTCGTGCAGGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGTGAGTATTCCATGATGAACTTCTCCAAGTGAAGAAGAAAAACAGGCACTGAATTATGTTGTTTTACTGTATGATCAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGGTGATCAAGTAAATTGAAAAATCAAATGATCTTACAAAATTTTGGTACTAACTTTGCTGCATAATACATATGTAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGTAAGTGGAGGAATTATTACATTTTGTCAATCTTGTAGAACTTTGACAATGAACAGTGCATTGCCACATGATCTGTTTTTTTTTTTCATTTGACAGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAGCCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCA] [+] EMBL AK120881 [TTTTCCCGCCCCCGCCAAAACCGCTGCCACGTCGTCGTCTCCCGCCAAAAAAAAAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCGTAAGCTTGGATTATCCAATTTATTTCTAAATTTTTTTTCTTGAGTTACCAAGTATCTGGTTGAATAATCAAGGAAAAAACATGATCAAATTTTAGATTCAAACAGTGCATTTTCTTGTGTGTTTAATCAACCAAGAAGAAACTTTGTAGGACTTTGGTGCAATGCAATCGGCAGTTGCAGTTTACATTTTTGATTTCTGAAGATATTTCTTTCAGTTTCTGAATTTTGACATCGATTTGGCATCCATTTGCATCACATGATGTTCTGAGTTGCTCTGAACAGATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGCAAGTTTTCACCTCCTCTATTGCACTTGTGCCATTCACACATTTGGAGATTTTTTTTTAAAAAAAGAACAATCTTACCATTTTGTTGTTAACTAAAAAAATGTGAAGGTGGGTGGATGAAGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTAAGAACACAGTTATTATGCAGAACAAATTGCTCAAAAATAGTTATGTAGAATTGCAACAACATTGGACCTTCATATATATTTTCATGATTGTTTGTATGTGTAAAATAGCAGAAACAATGTGTGTAACTAACTTCATGTGATTGTTTCAGGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTCAGGATCTCTGAATCTTCTCATGTTTCAACAAGCATTTCTGATGGCTATAGGTAGCTGAGTGCCTGATGTCTGAATGTTCGTGCAGGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGTGAGTATTCCATGATGAACTTCTCCAAGTGAAGAAGAAAAACAGGCACTGAATTATGTTGTTTTACTGTATGATCAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGGTGATCAAGTAAATTGAAAAATCAAATGATCTTACAAAATTTTGGTACTAACTTTGCTGCATAATACATATGTAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGTAAGTGGAGGAATTATTACATTTTGTCAATCTTGTAGAACTTTGACAATGAACAGTGCATTGCCACATGATCTGTTTTTTTTTTTCATTTGACAGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAGCCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCA] consensusID : consensus_13356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1453 fasta sequence [GTTCCCTTTTTATTGAGAGGATCCCCTCCCTCGTGTCGACACGATCGTCCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACACAAGGAAAGATTTAGGCGTAAGC-TATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAATTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTTCCTTGTATACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGGTGTTGGACAGATGAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTGTCTGTAACGTCGAGAGGGAGAGATGTTGACGCTGGCTGAAAGCACAACACAAGCAGAGTGATATTATACTACTACTAGTAATTTACTTATTAAAAA] [+] EMBL AK073939 [GTTCCCTTTTTATTGAGAGGATCCCCTCCCTCGTGTCGACACGATCGTCCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACACAAGGAAAGATTTAGGCGTAAGC TATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAATTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTTCCTTGTATACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGGTGTTGGACAGATGAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTGTCTGTAACGTCGAGAGGGAGAGATGTTGACGCTGGCTGAAAGCACAACACAAGCAGAGTG ] [+] EMBL C26593 [ TGTCGACACGATCGTCCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTNAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGNGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCNTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGTCGGAGCTCACCGACCNNCCTGTCCGCGT ] [+] EMBL CF280627 [ CCAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACC ] [+] EMBL AK060631 [ CAAAATAGGGAAGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCAGAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTTTCGCATTCCAGAAAGCGGACTAGGGCTCCCTCCAACTCCAACTCCAAGCCCACTTCACAAACCCAACCGCCGCCGCCGGAGCTCACCGACCGCCCTGTCCGCGTCTACGCCGACGGCATCTTCGATCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCTGTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTACAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAATGGGTTGATGAGGTCATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTATGTTGCTCATGATGCACTGCCTTATGCCGATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTTAAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATCAGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACACAAGGAAAGATTTAGGCGTAAGC TATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAAAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAATTACATGGGAGAGGCTTT ] [+] EMBL AF140496 [ GATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACGTGGATACTCAAGGAAAGATTTAGGCGT AGCTTATGTTAAGGAAAAGCAACTCCAGGTCAACATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGTGGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGCTGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCGTATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCAACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATG ] [+] EMBL CF326280 [ AAACAATCTCAGGGATACTTGGGGGTCTAATGCCGCACCCGGAGGCATCGTAATAAGGTGTTGAGGAGAGATGACGTTGAGTTGGACTAAGCTGCCCTGGGGTCACCACGGACTACAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGTGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTACAGCTTAGTTACATGGGAGAGGCTTTGTTTCTTGTT ] [+] EMBL AU166467 [ GCAGCGTAATAAGTTGTANAGGANAGATGACGTTGAGTTGGAGTAAGCTGCCCTGGGGTCACCNCGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGTGTGAGTGTGNGCTTGTGTCATGGAATGTGATGCTTGTACGAGTTGTTNCAGCTTAATTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTTCCTTGTANACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGGTGTTGGNCAGATNAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTGTCTGTAACGTCGAGAGGGANAGATGTTGACGCTGGCTGNAAGCACAACNCAAGCAGAGTGATATTATACTACTACTAGTAATTTACTTATTAAAAA] consensusID : consensus_13356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1057 fasta sequence [AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGTGGGTGGATGAGGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAG-CCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACC-AAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCAATTACTGCTC] [+] EMBL AK059796 [AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCGCAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGGCCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGAAATCATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTACAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGTGGGTGGATGAGGTGATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTACGTCGCTCATGATGCTCTTCCGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAG CCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACC AAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCAATTACTGCTC] [+] EMBL CA766897 [ aaggggGATGCTCTTCCGTATGCGGACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTCTGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTAGAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAAAAATTGTGGAGATCATTTCTAGCCTTGTGTGAGATTAG CCTCATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAAGGTTTTGTACTTCTGAGAACAATAATAATAGTTCGTGCA ] [+] EMBL BF475192 [ GAAATCTGACCCGGGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGAGAAGCAACTTACAGTAAACATGGGGATCAGCAAGCTAAGGGAGAAGGTGAAGGAGCATCAAGAGAAGTTTCACAGCGCGGCAAAGATAGCTGGAAGCAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATATCCAGATCAAACTGGGAAGAGAAACAATCGTGGAGATCATTTCTAGCCTTGTGTGACATTAGCCCTCATGTCGTACGACAAatt ] [+] EMBL AA751248 [ CACAGCGCGGCAAAGATAGCTGGAA SAATCCTGTGGAGTGGATGGAGAATGCCGACCGTTGGATCGTTGGGTTTCTTGAAAAGTTTGAGGAAGGTTGCCACATGATGGAAACCGCGATTAAAGATCGGATTCAGGAGGGGCTGAAGAGGCAAAGCAGGTCGGACCCCAACCTTTCTGGGGAGGATTCCGACTCATAATGGATCCTGTAATAT CAGATC AACTGG ] consensusID : consensus_13356#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TTTTTTTTTTTTGATACCAACAGATGCAACATACAACTAGGAAAACTGTACAAAGTTCAGTTTGTGCCTTTGTGGCATAGATACGCACATGATCCTTCAGTACAAGATGCAAAACATGCAGATTATCAGTGCAAGATGCAAATAGATAACCTTGAGCAGTAATTGCACGAACTATTATTATTGTTCTCGGAAGTACAAAACCTTTTAGTACAAACCCCCTTGTCTCGTCCTCT] [+] EMBL CA760490 [TTTTTTTTTTTTGATACCAACAGATGCAACATACAACTAGGAAAACTGTACAAAGTTCAGTTTGTGCCTTTGTGGCATAGATACGCACATGATCCTTCAGTACAAGATGCAAAACATGCAGATTATCAGTGCAAGATGCAAATAGATAACCTTGAGCAGTAATTGCACGAACTATTATTATTGTTCTCGGAAGTACAAAACCTTTTAGTACAAACCCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13356#0 -------TTTTCCCGCCCCCGCCAAAACCGCTGCCACGTCGTCGTCTCCCGCCAAAAAAA 53 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 GTTCCCTTTTTATTGAGAGGATCCCCTCCCTCGTGTCGACACGATCGTCCAAAATAGGGA 60 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCG 113 consensus_13356#2 AAAAAGTAGGCTTTGGGATCGCCGCCGGTGACGATGAAGCCACTGAAGGACGCGGACGCG 60 consensus_13356#1 AGAGGGAGGGGGTTCTTCTTCTCCTCGATCCGGTTGAGGACTTTGAGGTAGAGAGAGGCA 120 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGG 173 consensus_13356#2 CAGGAGAAGGCGGCGCCGCCGCCGACGGAGTGGTACGACCCGCTGTCGTCGCCGGGGCGG 120 consensus_13356#1 ---GAGGCGACGAGGAAGGATCTGATCTATCGATGGCGCGCGTT-TCGCATTCCAGAAAG 176 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCC 233 consensus_13356#2 CCGGTCAGGGTGTACGCCGATGGCATCTACGACCTCTTCCACTTCGGCCATGCCCGCGCC 180 consensus_13356#1 CGGACTAGGGCTCCCTCCAACTCCAACTCCAAGC----CCACTTCACAAACCCAACCGCC 232 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CTCGAGCAGGCCAAGAAATCGTAAGCTTGGATTATCCAATTTATTTCTAAATTTTTTTTC 293 consensus_13356#2 CTCGAGCAGGCCAAGAAATC---------------------------------------- 200 consensus_13356#1 GCCGCCGGAGCTCACCGACCGC-------------CCTGTCCGCGTCTA----------- 268 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 TTGAGTTACCAAGTATCTGGTTGAATAATCAAGGAAAAAACATGATCAAATTTTAGATTC 353 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ------------------------------------------------------------ consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 AAACAGTGCATTTTCTTGTGTGTTTAATCAACCAAGAAGAAACTTTGTAGGACTTTGGTG 413 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ------------------------------------------------------------ consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CAATGCAATCGGCAGTTGCAGTTTACATTTTTGATTTCTGAAGATATTTCTTTCAGTTTC 473 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ----------------CGCCGACGGCATCTTCGATCTCT--------------------- 291 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 TGAATTTTGACATCGATTTGGCATCCATTTGCATCACATGATGTTCTGAGTTGCTCTGAA 533 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ------------TCCACTTCGGCCATGCCCGCGCCCTCGAGCAGGCCAAGTTGCT----- 334 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CAGATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTA 593 consensus_13356#2 ---ATTCCCCAACACATATTTGCTCGTGGGCTGCTGCAGCGACGAGATCACCAACCTTTA 257 consensus_13356#1 ---GTTCCCCAACACGTACCTGCTAGTGGGCTGCTGCAACGACGAGCTCACCAACCGCTA 391 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAGCA 653 consensus_13356#2 CAAAGGCAAGACCGTCATGACTGAAGACGAGCGCTACGAATCGCTTCGCCATTGCAAG-- 315 consensus_13356#1 CAAGGGCAAGACCGTCATGACCCAGGATGAGCGATACGAGTCCCTTCGCCACTGCAAA-- 449 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 AGTTTTCACCTCCTCTATTGCACTTGTGCCATTCACACATTTGGAGATTTTTTTTTAAAA 713 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ------------------------------------------------------------ consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 AAAGAACAATCTTACCATTTTGTTGTTAACTAAAAAAATGTGAAGGTGGGTGGATGAAGT 773 consensus_13356#2 ----------------------------------------------TGGGTGGATGAGGT 329 consensus_13356#1 ----------------------------------------------TGGGTTGATGAGGT 463 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTA 833 consensus_13356#2 GATACCAGATGCTCCATGGGTTATCAATCAGGAGTTCCTAGACAAGCACCGCATCGACTA 389 consensus_13356#1 CATTCCTGATGCTCCATGGGTCCTCACGCAAGAGTTCATTGACAAACATCAGATTGACTA 523 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CGTCGCTCATGATGCTCTTCCGTAAGAACACAGTTATTATGCAGAACAAATTGCTCAAAA 893 consensus_13356#2 CGTCGCTCATGATGCTCTTCCGTA------------------------------------ 413 consensus_13356#1 TGTTGCTCATGATGCACTGCCTTA------------------------------------ 547 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 ATAGTTATGTAGAATTGCAACAACATTGGACCTTCATATATATTTTCATGATTGTTTGTA 953 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ------------------------------------------------------------ consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 TGTGTAAAATAGCAGAAACAATGTGTGTAACTAACTTCATGTGATTGTTTCAGGTATGCG 1013 consensus_13356#2 --------------------------------------------------------TGCG 417 consensus_13356#1 --------------------------------------------------------TGCC 551 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGTCAGGATCTCTGAATCTTCTCAT 1073 consensus_13356#2 GACACCAGTGGAGCTGCCAATGATGTCTATGAATTTGT---------------------- 455 consensus_13356#1 GATACTAGTGGAGCTGCTAATGATGTCTATGAATTTGTT--------------------- 590 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GTTTCAACAAGCATTTCTGATGGCTATAGGTAGCTGAGTGCCTGATGTCTGAATGTTCGT 1133 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 ------------------------------------------------------------ consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GCAGGTGAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTC 1193 consensus_13356#2 ------GAAGGCCGTTGGGAAGTTCAAGGAGACGAAGCGCACCGAGGGCGTCTCGACGTC 509 consensus_13356#1 -------AAAAAGATTGGCAAATTCAAGGAAACGAAACGGACAGACGGTGTATCCACATC 643 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 TGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCG 1253 consensus_13356#2 TGACATCATCATGAGGATCTTGAAGGACTACAACCAGTACATCATGCGAAATCTGACCCG 569 consensus_13356#1 AGACCTCATAATGAGGATATTGAAGGACTACAATCAGTATGTCATGAGGAATTTAGCACG 703 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGGTGA-GTATTCCATGATGAA 1312 consensus_13356#2 GGGATACTCCCGCAAAGACCTCGGTGTGAGCTATGTCAAGG------------------- 610 consensus_13356#1 TGGATACACAAGGAAAGATTTAGGCGTAAGCTATGTTAAGGAAAAGCAACTCCAGGTCAA 763 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CTTCTC--CAAGTGAAGAAGAAAAACAGGCACTGAATTATGTTGTTTTACTGTATGATCA 1370 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 CATGAAGATAAATAAACTGCGAGAGACTGTAAAGGCGCATCAAGAAAAGTTGCAAACGGT 823 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GGAGAAGCAACTTAGAGTAAA-CATGGGGATCAGCAAGCTAAGGGAGA-----AGGTGAA 1424 consensus_13356#2 --AGAAGCAACTTAGAGTAAA-CATGGGGATCAGCAAGCTAAGGGAGA-----AGGTGAA 662 consensus_13356#1 GGCGAAGACAGCTGGAATAAATCATGAAGAATGGTTGGCCAATGCAGATCGCTGGGTTGC 883 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GGAGCATCAAGAGAAGGTGATCAAGTAAATTGAAAAATCAAATGATCTTACAAAATTTTG 1484 consensus_13356#2 GGAGCATCAAGAGAAG-------------------------------------------- 678 consensus_13356#1 TGGTTTCTTGGAGAAGTTTGAGGAACACTGCCACAACATGGAAACTGCCATCAAGGGGCG 943 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 GTACTAACTTTGCTGCATAATACATAT-----GTAGTTTCACAGCGCGGCAAAGATAGC- 1538 consensus_13356#2 ------------------------------------TTTCACAGCGCGGCAAAGATAGC- 701 consensus_13356#1 TATCCAGGAGAAATTGAGGAGGCAAACAAGCAGAGGGATAATTGGGGGTCTAATGCAGCA 1003 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 --TGGAAGCAATCCTGTGGA--GTGGATGGAGAATGCCGACC-GTTGGATCGTTGGGTTT 1593 consensus_13356#2 --TGGAAGCAATCCTGTGGA--GTGGATGGAGAATGCCGACC-GTTGGATCGTTGGGTTT 756 consensus_13356#1 ACCGGTGGCAGCGTAATAAGTTGTAGAGGAGAGATGACGTTGAGTTGGA--GTAAGCTGC 1061 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CTTGAAAAGTTTGAGGAAGGTTGCCACA-TGATGGTAAGTGGAGGAATTATTACATTTTG 1652 consensus_13356#2 CTTGAAAAGTTTGAGGAAGGTTGCCACA-TGATGG------------------------- 790 consensus_13356#1 CCTGGGGTCACCACGGACGAGAAATGTAGTGAAGATGCCTTCTTGGTTGGCGGTTATAGT 1121 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 TCAATCTTGTAGAACTTTGACAATGAACAGTGCATTGCCACATGATCTGTTTTTTTTTTT 1712 consensus_13356#2 ------------------------------------------------------------ consensus_13356#1 GTGAGTGTGTG---CTTGTGTCATGGAATGTG-ATGCTTGTACGAGTTGTTACAGCTTAA 1177 consensus_13356#3 ------------------------------------------------------------ consensus_13356#0 CATTTGACAGGAAACCGCGATTAAAGATCGGATTCAGG-AGGGGCTGAAGAGGCAAAGCA 1771 consensus_13356#2 -----------AAACCGCGATTAAAGATCGGATTCAGG-AGGGGCTGAAGAGGCAAAGCA 838 consensus_13356#1 TTACATGGGAGAGGCTTTGTTTCTTGTTTATTTTTTTGCGGGGGGTGGGGGTGTTGGTTT 1237 consensus_13356#3 ---------------------------TTTTTTTTTTTTGATACCAACAGATGCAACATA 33 * ** * * consensus_13356#0 GGTCGGACCCCAACCTTTCTGG-GGAGGATTCCGACTCATAATGGATCCTGTAATATCCA 1830 consensus_13356#2 GGTCGGACCCCAACCTTTCTGG-GGAGGATTCCGACTCATAATGGATCCTGTAATATCCA 897 consensus_13356#1 CCTTGTATACAAATGTCTATAGCAGAGGCGTTTGGTGCATAATCCAGAGTGTGTAGTAGG 1297 consensus_13356#3 CAACTAGG--AAAACTGTACAA-AGTTCAGTTTGTGCCTTTGTGGCATAGATACGCACAT 90 ** * * * * * * * * * consensus_13356#0 GATCAAACTGG-GAAGAGAAAAAATTGTGGAG-ATCATTTCTAGCCTTGTGTGAGATTAG 1888 consensus_13356#2 GATCAAACTGG-GAAGAGAAAAAATTGTGGAG-ATCATTTCTAGCCTTGTGTGAGATTAG 955 consensus_13356#1 TGTTGGACAGATGAAGTTGAGTGGTACTGTAGTGTTGTTGTTCTCTTCCCTTGGGTTTTG 1357 consensus_13356#3 GATCCTTCAGTACAAGATGCAAAACA-TGCAG----ATTATCAGTGCAAGATGCAAATAG 145 * * * *** ** ** ** ** * * consensus_13356#0 CCTC--ATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAG-GTT 1945 consensus_13356#2 CCTC--ATGTTGTAGGACAATTAAAGTGACCGTGCATGGTTTGTTTGTACCAAAAG-GTT 1012 consensus_13356#1 TCTGTAACGTCGAGAGGGAGAGATGTTGACGCTGGCTGAAAGCACAACACAAGCAGAGTG 1417 consensus_13356#3 ATA---ACCTTGAGCAGTAATTGCACGAACTATTATTATTGTTCTCGGAAGTACAAAACC 202 * * * * ** * * * * consensus_13356#0 TTGTACTTCTGAGAACAATAATAATAGTTCGTGCA---------- 1980 consensus_13356#2 TTGTACTTCTGAGAACAATAATAATAGTTCGTGCAATTACTGCTC 1057 consensus_13356#1 ATATTATACTACTACTAGTAATT-TACTTATTAAAAA-------- 1453 consensus_13356#3 TTTTAGTACAAACCCCCTTGTCTCGTCCTCT-------------- 233 * * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||