cluster # 13364

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Oryza sativa
cluster # 13364 cluster # 13364 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13364#0 length = 2196 sequences # 9

consensus_13364#1 length = 530 sequences # 2
consensus_13364#2 length = 334 sequences # 2

consensusID : consensus_13364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2196
fasta sequence

                              [GGGGGAGAAAAAAAAATGTCCCACTTCCGCCAGGTTCGCGGCGCGCACGCCGCATCCTCCCTCCTCCCGTTTTCCCACCGCCCCCCGCGCGCGACGACGACGACGACACCTCCTCGCCCAAACCGCTGCCGCCGCCTACATATACACTCCTCCGCGTCGCACCACCACATCCACAACCAGTTGCGCCACAGGCGCGCGAGCCACCACCGCAGGCGAGAGATTGTCGTCGTCGTCGTCCGTTGCTTCGGCCGCGACGACGACGGCGTCATGGCGTCCACGGATCCGCTGCTCGGCGGCAAGGAGGAGGAGGAGGGTGGAGGTGAGGTGAGGAGGGCGCGGCGGTGGTGGGTGGGGCGGGTGGTGGACACGGAGGAGGCGTGGGCGCAGACGCGGTTCGCGGTGCCGATGGTGCTCACCAACATGTCCTACTACGCCATCCCGCTGGTGTCCGTCATGTTCTCCGGCCACCTCGGCGACGTCCACCTCGCCGGCGCCACGCTCGGCAACTCGTGGGCCACCGTCACCGGCTACGCCTTCGTCACGGGCATGAGCGGGGCCCTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCGGATGTACCGCATGCTGGGCCTCTACCTGCAGTCGTCGCTGCTCATGTCGGCGGCGGTGTCCGTCCTCGTCTCCGCACTCTGGTGCTTCACCGAGCCCCTCCTCCTCCTCCTCCGGCAGGACCCGGCGGTGTCCGCCGCCGCGTCGGCGTTCGTGCGCGCGCAGGTCCCGGGGCTCTTCGCCTTCTCCTTCCTCCAGTGCCTCCTCCGGTACCTGCAGACGCAGTCCGTCGTCGCGCCGCTCGTCGCCTGCTCCCTGGCGCCGTTCCTGCTCCACGTCGCGCTGGCGCACCTCCTCGTCAACGCGCTCGGCCTCGGCCTCGCCGGCGCCGGCGCCGCCGTGTCCATCACCTTCTGGGCCTCCTGCCTCATGCTCCTCGCCTACGTGCTCCGGTCCGAGAGGTTCGCCGAGACGTGGAACGGCTTCTCCGCCGAGGCGTTCAGGTTCGTCGTCCCCACCATCAAGCTCGCCACGCCCTCCGCCGTCATGGTCTGCTTGGAGTACTGGGCGTTTGAGCTACTGGTACTGATCGCCGGATTGCTCCCGAATCCGACAGTGAGCACCTCGCTGATCGCCATGTGCTCGAGCACGGAGGCCATCGCCTACATGATCACGTACGGGTTCAGCGCCGCTGTGAGCACGCGGGTGTCGAACGAGATCGGGGCCGGGAACGTGGAGGGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCGGCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCAGCGGCAGCGCCATCATCGCGGCGGAGTTCGCCGCCGTGGCGCCGCTGATGATGGCCTCCATCCTGCTCGACTCCGCGCAGGGGGTCCTCTCCGGCGTCGCCAGGGGCTGCGGCTGGCAGCACCTCGCCGCCGTGACCAACCTCGTCGCCTTCTACGTCATCGGCATGCCGCTCTCCATCTTCTTCGCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAAATGGTCCAAGATCGTGGACGCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATATGTGTATGTATACACGATGAGCATTTGAAGCAACATCTGCGGTTAGCATGTTTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCGGGGTTTTGGACGCGACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTTTTCAGCCATTTGGAAGCTGGAAGCCTGGAATAGACAAACCCCTTAGAGCAAGTATAATAGTAGGCTATAAGCCAACTATAAGCTTAAGGAGAATTTGAAAAATGGAGAGAGTTGGCTTTCATGCAAGAGCTAGCTATTCACATATTTTAAGATAGATACATAGGTGAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATATATGTTAACTCTAAGATAAGCTATAAACTCATTGTTGGCTCTATT]

[+] EMBL CB640250             [GGGGGAGAAAAAAAAATGTCCCACTTCCGCCAGGTTCGCGGCGCGCACGCCGCATCCTCCCTCCTCCCGTTTTCCCACCGCCCCCCGCGCGCGACGACGACGACGACACCTCCTCGCCCAAACCGCTGCCGCCGCCTACATATACACTCCTCCGCGTCGCACCACCACATCCACAACCAGTTGCGCCACAGGCGCGCGAGCCACCACCGCAGGCGAGAGATTGTCGTCGTCGTCGTCCGTTGCTTCGGCCGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK120682             [                                                                                                                                                                                    TTGCGCCACAGGCGCGCGAGCCACCACCGCAGGCGAGAGATTGTCGTCGTCGTCGTCCGTTGCTCCGGCCGTGACGACGACGGCGTCATGGCGTCCACGGATCCGCTGCTCGGCGGCAAGGAGGAGGAGGAGGGTGGAGGTGAGGTGAGGAGGGCGCGGCGGTGGTGGGTGGGGCGGGTGGTGGACACGGAGGAGGCGTGGGCGCAGACGCGGTTCGCGGTGCCGATGGTGCTCACCAACATGTCCTACTACGCCATCCCGCTGGTGTCCGTCATGTTCTCCGGCCACCTCGGCGACGTCCACCTCGCCGGCGCCACGCTCGGCAACTCGTGGGCCACCGTCACCGGCTACGCCTTCGTCACGGGCATGAGCGGGGCCCTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCGGATGTACCGCATGCTGGGCCTCTACCTGCAGTCGTCGCTGCTCATGTCGGCGGCGGTGTCCGTCCTCGTCTCCGCACTCTGGTGCTTCACCGAGCCCCTCCTCCTCCTCCTCCGGCAGGACCCGGCGGTGTCCGCCGCCGCGTCGGCGTTCGTGCGCGCGCAGGTCCCGGGGCTCTTCGCCTTCTCCTTCCTCCAGTGCCTCCTCCGGTACCTGCAGACGCAGTCCGTCGTCGCGCCGCTCGTCGCCTGCTCCCTGGCGCCGTTCCTGCTCCACGTCGCGCTGGCGCACCTCCTCGTCAACGCGCTCGGCCTCGGCCTCGCCGGCGCCGGCGCCGCCGTGTCCATCACCTTCTGGGCCTCCTGCCTCATGCTCCTCGCCTACGTGCTCCGGTCCGAGAGGTTCGCCGAGACGTGGAACGGCTTCTCCGCCGAGGCGTTCAGGTTCGTCGTCCCCACCATCAAGCTCGCCACGCCCTCCGCCGTCATGGTCTGCTTGGAGTACTGGGCGTTTGAGCTACTGGTACTGATCGCCGGATTGCTCCCGAATCCGACAGTGAGCACCTCGCTGATCGCCATGTGCTCGAGCACGGAGGCCATCGCCTACATGATCACGTACGGGTTCAGCGCCGCTGTGAGCACGCGGGTGTCGAACGAGATCGGGGCCGGGAACGTGGAGGGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCGGCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCAGCGGCAGCGCCATCATCGCGGCGGAGTTCGCCGCCGTGGCGCCGCTGATGATGGCCTCCATCCTGCTCGACTCCGCGCAGGGGGTCCTCTCCGGCGTCGCCAGGGGCTGCGGCTGGCAGCACCTCGCCGCCGTGACCAACCTCGTCGCCTTCTACGTCATCGGCATGCCGCTCTCCATCTTCTTCGCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAAATGGTCCAAGATCGTGGACGCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATATGTGTATGTATACACGATGAG                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS14546A            [                                                                                                                                                                                                                                                                                                                                                                                                                                            CTACGCCATCCCGCTGGTGTCCGTCATGTTCTCCGGCCACCTCGGCGACGTCCACCTCGCCGGCGCCACGCTCGGCAACTNGTGGGCCACCGTCACCGGCTACGCCTTCGTCACGGGCATGAGCGGGGCCCTGGAGACGCTGTG GGGCAGGCGTACGGCGCGCGGATGTACCGCATGCTGGGCCTCTACCTGCAGTCGTCGCTGCTCATGTCGGCGGCGGTGTCCGTCCTCGTCTCCGCACTCTGGTGTTTCACCGAGCCCCTCCTCCTCCTCCTNCGGCAGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB652291             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTTCGCCGAGACGTGGAACGGCTTCTCCGCCGAGGCGTTCAGGTTCGTCGTCCCCACCATCAAGCTCGCCACGCCCTCCGCCGTCATGGTCTGCTTGGAGTACTGGGCGTTTGAGCTACTGGTACTGATCGCCGGATTGCTCCCGAATCCGACAGTGAGCACCTCGCTGATCGCCATGTGCTCGAGCACGGAGGCCATCGCCTACATGATCACGTACGGGTTCAGCGCCGCTGTGAGCACGCGGGTGTCGAACGAGATCGGGGCCGGGAACGTGGAGGGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCGGCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCAGCGGCAGCGCCATCATCGCGGCGGAGTTCGCCGCCGTGGCGCCGCTGATGATGGCCTCCATCCTGCTCGACTCCGCGCAGGGGGTCCTCTCCGGCGTCGCCAGGGGCTGCGGCTGGCAGCACCTCGCCGCCGTGACCAACCTCGTCGCCTTCTACGTCATCGGCATGCCGCTCTCCATCTTCTTCGCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACATGCCAGACCTGCACGCTGATGGTGATCCCCGCACGAACCAAATGGTCCAAGATCGTGGACGCGATGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF196122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCATCAAGCTCGCCACGCCCTCCGCCGTCATGGTCTGCTTGGAGTACTGGGCGTTTGAGCTGCTGGTACTGATCGCCGGATTGCTCCCGAATCCGACAGTGAGCACCTCGCTGATCGCCATGTGCTCGAGCACGGAGGCCATCGCCTACATGATCACGTACGGGTTCAGCGCCGCAGTGAGCACGCGGGTGTCGAACGAGATCGGGGCCGGGAACGTGGAGGGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCGGCGGCGTTCnt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AA752735             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cgaGGGAACGTGGAGGGGGCGAAAAACGCGGTGGCGGTGACACTGAAACTGTCNGTGTTCCTGGCGGCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCATCGGCAGCGCCATCATCNCGGCGGANTTCNCCNCCGTGGCGCCGCTGATAATAGACTCCATCCTGCTCGACTCCGCGCAGGGGGTCNTCTCCNGCGTCTCCAANGGCTGCGGCTGGCAGCACCTCNCCGCCGTGACNAACCTCGTCGCCTTCTANNTCNTCGGCATGCCGCTCTCCATCTTCTTCGCCTTCAAGCTCAANTGGTNCACCAAGGGATNATGGATGGGTTTGATCTGCGGGCTGACATGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU069464             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCGGCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCAGCGGCAGCGCCATCATCGCGGCGGAGTTCGCCGCCGTGGCGCCGCTGATGATGGCCTCCATCCTGCTCGACTCCGCGCAGGGGGTCCTCTCCGGCGTCGCCAGGGGCTGCGGCTGGCAGCACCTCGCCGCCGTGACCAACCTCGTCG CTTCTACGTCATCGGCATGCCG TCTCCATCTTCTTCGCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGC GGCTGACATGCCAGACCTGCACGCTGATGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB661722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACCTCGTCGCCTTTTACGTCATCGGCATGCCGCTCTCCATCTTCTTCGCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAAATGGTCCAAGATCGTGGACGCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATATGTGTATGTATACACGATGAGCATTTGAAGCAACATCTGCGGTTAGCATGTTTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCGGGGTTTTGGACGCGACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTTTTCAGCCATTTGGAAGCTGGAAGCCTGGAATAGACAAACCCCTTAGAGCAAGTATAATAGTAGGCTATAAGCCAACTATAAGCTTAAGGAGAATTTGAAAAATGGAGAGAGTTGGCTTTCATGCAAGAGCTAGCTATTCACATATTTTAAGATAGATACATAGGTGAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATATATGTTAACTCTAAGATAAGCTATAAACTCATTGTTGG       ]
[+] EMBL CB661721             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGCCTTCTACGTCATCGGCATGCCGCTCTCCATCTTCTTCGCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAAATGGTCCAAGATCGTGGACGCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATATGTGTATGTATACACGATGAGCATTTGAAGCAACATCTGCGGTTAGCATGTCTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCGGGGTTTTGGACGCGACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTCTTCAGCCATCTGGAAGCTGGAAGCCTGGAATAGACAAACACCTTAGAGCAAGTATAATAGTAGGCTATAAGCCAACTATAAGCTTAAGGAGAATTTGAAAAATGGAGAGAGTTGGCTCTCATGCAAGAGCTAGCTATTCACATATTTTAAGATAGATACATAGGTGAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATATATGTTAACTCTAAGATAAGCTATAAACTCATTGTTGGCTCTATT]




>consensus_13364#0
GGGGGAGAAAAAAAAATGTCCCACTTCCGCCAGGTTCGCGGCGCGCACGCCGCATCCTCC
CTCCTCCCGTTTTCCCACCGCCCCCCGCGCGCGACGACGACGACGACACCTCCTCGCCCA
AACCGCTGCCGCCGCCTACATATACACTCCTCCGCGTCGCACCACCACATCCACAACCAG
TTGCGCCACAGGCGCGCGAGCCACCACCGCAGGCGAGAGATTGTCGTCGTCGTCGTCCGT
TGCTTCGGCCGCGACGACGACGGCGTCATGGCGTCCACGGATCCGCTGCTCGGCGGCAAG
GAGGAGGAGGAGGGTGGAGGTGAGGTGAGGAGGGCGCGGCGGTGGTGGGTGGGGCGGGTG
GTGGACACGGAGGAGGCGTGGGCGCAGACGCGGTTCGCGGTGCCGATGGTGCTCACCAAC
ATGTCCTACTACGCCATCCCGCTGGTGTCCGTCATGTTCTCCGGCCACCTCGGCGACGTC
CACCTCGCCGGCGCCACGCTCGGCAACTCGTGGGCCACCGTCACCGGCTACGCCTTCGTC
ACGGGCATGAGCGGGGCCCTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCGGATGTAC
CGCATGCTGGGCCTCTACCTGCAGTCGTCGCTGCTCATGTCGGCGGCGGTGTCCGTCCTC
GTCTCCGCACTCTGGTGCTTCACCGAGCCCCTCCTCCTCCTCCTCCGGCAGGACCCGGCG
GTGTCCGCCGCCGCGTCGGCGTTCGTGCGCGCGCAGGTCCCGGGGCTCTTCGCCTTCTCC
TTCCTCCAGTGCCTCCTCCGGTACCTGCAGACGCAGTCCGTCGTCGCGCCGCTCGTCGCC
TGCTCCCTGGCGCCGTTCCTGCTCCACGTCGCGCTGGCGCACCTCCTCGTCAACGCGCTC
GGCCTCGGCCTCGCCGGCGCCGGCGCCGCCGTGTCCATCACCTTCTGGGCCTCCTGCCTC
ATGCTCCTCGCCTACGTGCTCCGGTCCGAGAGGTTCGCCGAGACGTGGAACGGCTTCTCC
GCCGAGGCGTTCAGGTTCGTCGTCCCCACCATCAAGCTCGCCACGCCCTCCGCCGTCATG
GTCTGCTTGGAGTACTGGGCGTTTGAGCTACTGGTACTGATCGCCGGATTGCTCCCGAAT
CCGACAGTGAGCACCTCGCTGATCGCCATGTGCTCGAGCACGGAGGCCATCGCCTACATG
ATCACGTACGGGTTCAGCGCCGCTGTGAGCACGCGGGTGTCGAACGAGATCGGGGCCGGG
AACGTGGAGGGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCG
GCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCAGCGGC
AGCGCCATCATCGCGGCGGAGTTCGCCGCCGTGGCGCCGCTGATGATGGCCTCCATCCTG
CTCGACTCCGCGCAGGGGGTCCTCTCCGGCGTCGCCAGGGGCTGCGGCTGGCAGCACCTC
GCCGCCGTGACCAACCTCGTCGCCTTCTACGTCATCGGCATGCCGCTCTCCATCTTCTTC
GCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACA
TGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAAATGGTCCAAGATCGTGGAC
GCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTG
TAGATTATCGATCGGATTGGATATGTGTATGTATACACGATGAGCATTTGAAGCAACATC
TGCGGTTAGCATGTTTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTGCG
CCTGCGACGTTTCGCGGGGTTTTGGACGCGACGACAATGCGCGCGAACTGCTTGTTCAAA
TACAGTTTTTTCAGCCATTTGGAAGCTGGAAGCCTGGAATAGACAAACCCCTTAGAGCAA
GTATAATAGTAGGCTATAAGCCAACTATAAGCTTAAGGAGAATTTGAAAAATGGAGAGAG
TTGGCTTTCATGCAAGAGCTAGCTATTCACATATTTTAAGATAGATACATAGGTGAGAGA
TAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATATATGTTAAC
TCTAAGATAAGCTATAAACTCATTGTTGGCTCTATT

consensusID : consensus_13364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 530
fasta sequence

                              [GAAGCCAGCTACNTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATTTGTGTATGTATACACGATGAGCACTTTGAAGCAACATCTGCGGTTAGCATGTCTGCAACACGCGCGACGCCGGCTGTTCCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTCTTCAGCCATCTGGAAGCTGGAAGCCTGGAATGGACGAACGCCTTAGAGCAAGTATAATAGTAGGCTATAAGCCAACTATAAACTTATGTGGAGGAAAGAGAATTTGAAAAATGGAGAGGGTTGGCTCTCATACCAAGAGCTAGCTATTCACATATTTTAAGATAGATATATTAAATACATAGGTGAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATACATGTTAACTCTAAGATAAGCTACTNAACTCATTGTTGACTCTAAAAAAAAAA]

[+] EMBL BM422026             [GAAGCCAGCTACNTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATTTGTGTATGTATACACGATGAGCACTTTGAAGCAACATCTGCGGTTAGCATGTCTGCAACACGCGCGACGCCGGCTGTTCCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTCTTCAGCCATCTGGAAGCTGGAAGCCTGGAATGGACGAACGCCTTAGAGCAAGTATAATAGTAGGCTATAAGCCAACTATAAACTTATGTGGAGGAAAGAGAATTTGAAAAATGGAGAGGGTTGGCTCTCATACCAAGAGCTAGCTATTCACATATTTTAAGATAGATATATTAAATACATAGGTGAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATACATGTTAACTCTAAGATAAGCTACTNAACTCATTGTTGACTCTAAAAAAAAAA]
[+] EMBL CB096242             [                                                                                                                                                                                                                                                                     aaggggGGACGAACGCCTTAGAGCAAGTATAATAGTAGGCTATAAGCCAACTATAAACTTATGTGGAGGAAAGAGAATTTGAAAAATGGAGAGGGTTGGCTCTCATA CAAGAGCTAGCTATTCACATAT                                                                                                                                           ]




>consensus_13364#1
GAAGCCAGCTACNTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGG
ATTGGATTTGTGTATGTATACACGATGAGCACTTTGAAGCAACATCTGCGGTTAGCATGT
CTGCAACACGCGCGACGCCGGCTGTTCCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCG
CCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTCTTCA
GCCATCTGGAAGCTGGAAGCCTGGAATGGACGAACGCCTTAGAGCAAGTATAATAGTAGG
CTATAAGCCAACTATAAACTTATGTGGAGGAAAGAGAATTTGAAAAATGGAGAGGGTTGG
CTCTCATACCAAGAGCTAGCTATTCACATATTTTAAGATAGATATATTAAATACATAGGT
GAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATACAT
GTTAACTCTAAGATAAGCTACTNAACTCATTGTTGACTCTAAAAAAAAAA

consensusID : consensus_13364#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence

                              [GCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAA-CCAATGGTCCAAGATCGTGGACGCGATG-CAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATTTGTGTATGTATACACCGATGAGCATTTGAAGCAACATCTGCGGTTAGCATGTCTGCAACA-CGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTCTTCAGCCCAAAAAAAAAA]

[+] EMBL BI804125             [GCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAA CCAATGGTCCAAGATCGTGGACGCGATG CAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATTTGTGTATGTATACACCGATGAGCATTTGAAGCAACATCTGCGGTTAGCATGTCTGCAACA CGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTGCGCCTGCGACGTTTCGCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTCAAATACAGTTTCTTCAGCCCAAAAAAAAAA]
[+] EMBL BI800364             [GCTGACATGCCAGACCTGCACGCTGATGGTGATCCCCGCACGAACCCAATGGTCCAAGATCGTGGACGCGATGCCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTGTAGATTATCGATCGGATTGGATTTGTGTATGTATAC CCGATGAGCATTTGAA CCACATCT CGGTTAGCATGTCTGCAACACCGCGCGAC CCGGCTGTTGCGTTCGT C GTGCGTGC CCTGCGACGTTTCGCGGGGTTTTGGAC C ACGACCATGCGC CGAACTGCTTGTTC AATAC GTTTCTTC               ]




>consensus_13364#2
GCTGACATGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAATGGTCCAAGATC
GTGGACGCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCT
ATACTGTAGATTATCGATCGGATTGGATTTGTGTATGTATACACCGATGAGCATTTGAAG
CAACATCTGCGGTTAGCATGTCTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGT
GCGTGCGCCTGCGACGTTTCGCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTT
GTTCAAATACAGTTTCTTCAGCCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13364#0      GGGGGAGAAAAAAAAATGTCCCACTTCCGCCAGGTTCGCGGCGCGCACGCCGCATCCTCC 60
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      CTCCTCCCGTTTTCCCACCGCCCCCCGCGCGCGACGACGACGACGACACCTCCTCGCCCA 120
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      AACCGCTGCCGCCGCCTACATATACACTCCTCCGCGTCGCACCACCACATCCACAACCAG 180
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      TTGCGCCACAGGCGCGCGAGCCACCACCGCAGGCGAGAGATTGTCGTCGTCGTCGTCCGT 240
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      TGCTTCGGCCGCGACGACGACGGCGTCATGGCGTCCACGGATCCGCTGCTCGGCGGCAAG 300
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GAGGAGGAGGAGGGTGGAGGTGAGGTGAGGAGGGCGCGGCGGTGGTGGGTGGGGCGGGTG 360
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GTGGACACGGAGGAGGCGTGGGCGCAGACGCGGTTCGCGGTGCCGATGGTGCTCACCAAC 420
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      ATGTCCTACTACGCCATCCCGCTGGTGTCCGTCATGTTCTCCGGCCACCTCGGCGACGTC 480
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      CACCTCGCCGGCGCCACGCTCGGCAACTCGTGGGCCACCGTCACCGGCTACGCCTTCGTC 540
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      ACGGGCATGAGCGGGGCCCTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCGGATGTAC 600
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      CGCATGCTGGGCCTCTACCTGCAGTCGTCGCTGCTCATGTCGGCGGCGGTGTCCGTCCTC 660
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GTCTCCGCACTCTGGTGCTTCACCGAGCCCCTCCTCCTCCTCCTCCGGCAGGACCCGGCG 720
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GTGTCCGCCGCCGCGTCGGCGTTCGTGCGCGCGCAGGTCCCGGGGCTCTTCGCCTTCTCC 780
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      TTCCTCCAGTGCCTCCTCCGGTACCTGCAGACGCAGTCCGTCGTCGCGCCGCTCGTCGCC 840
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      TGCTCCCTGGCGCCGTTCCTGCTCCACGTCGCGCTGGCGCACCTCCTCGTCAACGCGCTC 900
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GGCCTCGGCCTCGCCGGCGCCGGCGCCGCCGTGTCCATCACCTTCTGGGCCTCCTGCCTC 960
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      ATGCTCCTCGCCTACGTGCTCCGGTCCGAGAGGTTCGCCGAGACGTGGAACGGCTTCTCC 1020
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GCCGAGGCGTTCAGGTTCGTCGTCCCCACCATCAAGCTCGCCACGCCCTCCGCCGTCATG 1080
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GTCTGCTTGGAGTACTGGGCGTTTGAGCTACTGGTACTGATCGCCGGATTGCTCCCGAAT 1140
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      CCGACAGTGAGCACCTCGCTGATCGCCATGTGCTCGAGCACGGAGGCCATCGCCTACATG 1200
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      ATCACGTACGGGTTCAGCGCCGCTGTGAGCACGCGGGTGTCGAACGAGATCGGGGCCGGG 1260
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      AACGTGGAGGGGGCGAAGAACGCGGTGGCGGTGACGCTGAAGCTGTCGGTGTTCCTGGCG 1320
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GCGGCGTTCGTGCTGCTCCTCGGCTTCGGCCACGGCCTCTGGGCGGGGCTCTTCAGCGGC 1380
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      AGCGCCATCATCGCGGCGGAGTTCGCCGCCGTGGCGCCGCTGATGATGGCCTCCATCCTG 1440
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      CTCGACTCCGCGCAGGGGGTCCTCTCCGGCGTCGCCAGGGGCTGCGGCTGGCAGCACCTC 1500
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GCCGCCGTGACCAACCTCGTCGCCTTCTACGTCATCGGCATGCCGCTCTCCATCTTCTTC 1560
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GCCTTCAAGCTCAAGTGGTACACCAAGGGATTATGGATGGGTTTGATCTGCGGGCTGACA 1620
consensus_13364#2      -----------------------------------------------------GCTGACA 7
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      TGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAAATGGTCCAAGATCGTGGAC 1680
consensus_13364#2      TGCCAGACCTGCACGCTGATGGTGATCACCGCACGAACCAA-TGGTCCAAGATCGTGGAC 66
consensus_13364#1      ------------------------------------------------------------
                                                                                   

consensus_13364#0      GCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTG 1740
consensus_13364#2      GCGATGCAGGAGAAGAAGGCCAGCTACGTCGCGTAGTTTAACTAGTCTTTGGCTATACTG 126
consensus_13364#1      ---------------GAAGCCAGCTACNTCGCGTAGTTTAACTAGTCTTTGGCTATACTG 45
                                       * ********* ********************************

consensus_13364#0      TAGATTATCGATCGGATTGGATATGTGTATGTATACAC-GATGAGCA-TTTGAAGCAACA 1798
consensus_13364#2      TAGATTATCGATCGGATTGGATTTGTGTATGTATACACCGATGAGCA-TTTGAAGCAACA 185
consensus_13364#1      TAGATTATCGATCGGATTGGATTTGTGTATGTATACAC-GATGAGCACTTTGAAGCAACA 104
                       ********************** *************** ******** ************

consensus_13364#0      TCTGCGGTTAGCATGTTTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTG 1858
consensus_13364#2      TCTGCGGTTAGCATGTCTGCAACACGCGCGACGCCGGCTGTTGCGTTCGTGCAGTGCGTG 245
consensus_13364#1      TCTGCGGTTAGCATGTCTGCAACACGCGCGACGCCGGCTGTTCCGTTCGTGCAGTGCGTG 164
                       **************** ************************* *****************

consensus_13364#0      CGCCTGCGACGTTTCGC-GGGGTTTTGGACGCGACGACAATGCGCGCGAACTGCTTGTTC 1917
consensus_13364#2      CGCCTGCGACGTTTCGC-GGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTC 304
consensus_13364#1      CGCCTGCGACGTTTCGCCGGGGTTTTGGACGCAACGACAATGCGCGCGAACTGCTTGTTC 224
                       ***************** ************** ***************************

consensus_13364#0      AAATACAGTTTTTTCAGCCATTTGGAAGCTGGAAGCCTGGAATAGACAAACCCCTTAGAG 1977
consensus_13364#2      AAATACAGTTTCTTCAGCCCAAAAAAAAAA------------------------------ 334
consensus_13364#1      AAATACAGTTTCTTCAGCCATCTGGAAGCTGGAAGCCTGGAATGGACGAACGCCTTAGAG 284
                       *********** *******      **                                 

consensus_13364#0      CAAGTATAATAGTAGGCTATAAGCCAACTATAAGCTTAAGGAGAATTTGAAAAATGGAGA 2037
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      CAAGTATAATAGTAGGCTATAAGCCAACTATAAACTTATGTGGAGGAAAGAGAATTTGAA 344
                                                                                   

consensus_13364#0      GAGTTGGCTTTCATGCAAGAGCTAGCTATTCACATATTTTAAGATAGATACATAGGTGAG 2097
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      AAATGGAGAGGGTTGGCTCTCATACCAAGAGCTAGCTATTCACATATTTTAAGATAGATA 404
                                                                                   

consensus_13364#0      AGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAGCCCATTTACTATATATGTT 2157
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      TATTAAATACATAGGTGAGAGATAGAGAGAGGAGGAGAAAAAAAAGAGGTAACCTTATAG 464
                                                                                   

consensus_13364#0      AACTCTAAGATAAGCTATAAACTCATTGTTGGCTCTATT--------------------- 2196
consensus_13364#2      ------------------------------------------------------------
consensus_13364#1      CCCATTTACTATACATGTTAACTCTAAGATAAGCTACTNAACTCATTGTTGACTCTAAAA 524
                                                                                   

consensus_13364#0      ------
consensus_13364#2      ------
consensus_13364#1      AAAAAA 530