cluster # 13367

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Oryza sativa
cluster # 13367 cluster # 13367 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13367#0 length = 1705 sequences # 10
consensus_13367#1 length = 567 sequences # 1

consensus_13367#2 length = 464 sequences # 1
consensus_13367#3 length = 323 sequences # 1

consensusID : consensus_13367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1705
fasta sequence

                              [ATAAGCCCCCCCGGCACCCTTATCACCACCACCACCGCCACCATGCTCTCCCTCTCCCACCCCCACCCCCACCCCGCCTCCACCACGGCGGCGGCGGCGGCGCGCCACCACCACCGCCGGAACGCCCCCTTCGCGCCGCACCACCGCCGCCGCCGCCGCTTCGCGCACCTGACGACCTCCGCCGTCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCGCGCGACAACAAGCTCCCCTTCACCCCTCCCCCCACCGCGCCGCCCGACCAGCTCTACCAGCCGTTCCATCCGCCGCCGTCGCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTCCGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGCGCTGTCGAGGGAAGGGTTCACGCCGTCGTCGATCGAGGAGGCCACGGGGATCTCCGGCGTCGAGCAGAACAGCGTCGTCGTCGCCACCCAGGTCCGCGACTCGCTCGTCGCCGACGAGGGCGGCTTCCCCGCCGAGCTCCTCCGCTACTTCGACTCCTACGGCGGGCCCGAGCTGCTCTACGAGCTCCGGTTCCTCAACGCGAGGCAGCGCGCCGACGCGGCGAGGCACGCCATCGACCGCCGCCTGGAGCCACGCGGGGTGCGCGAGCTCGCCCGCTCCATGAAGGACTTCCCGCAACGCCGCGGCGACGACGGGTGGGAGGCCTTCACGCGGGACAACCCCGGGGACTGCCTCGCCTTCGCGCGGTTCCGCCAGTCGCGTGAGGCCATCGACGCCGAGGACTCCGTGGCGGAGCTGGAGCGCGCGCTGGAGGTTGTGGACACGGAGCCCGCGAGGGCGCGGGTGGAGGCGGAGCTCGACCGCGCGAGGAGGAAGGCCGCCGGGGAGGAGGTGGACGACGAGGACGGCGCCGCCAACGCCGCCGCCGCCGCGTCGCGCCCTGCCGTGCCCGTGGTGCGGCTCATGTACGGCGAGGTGGCGGAGGCGACGACCGTGCTGCTGCTCCCGGTGGTGCGCGAGGGCGACGGCGGCGAGGCGCTCGCCCACGCGCCGAGGCGGACCAGGACGGACGCGGACCTCGGCATGGTGGAGGTGGACAAGGGGTGGACGCGGTGGGCGGTGGTGCCCGGGTGGGGCCCCGTGGCGGAGGTAGCCGGCGAGGCGGTGGTGATTGAGCTCGCCGACGGGCGCACGCTGCCGTGGCGGTCGGCGGAGGCGGAGCGGGTGCTGGTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTCGAGGACGGCATCTACGTGGTGGAGAGGGAGGGGA-GGCTGGTGGTGGAGAA-GGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCCGCCGCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACAAAATCTCTCCCT-AATTCTCATCATT-TCATAGTTCATGAATGGATTATTAGGGGAAATCAGTT-GTTTCTTTTTATTACAGTATAAACTCATAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCATTGCTTAATTTCTTCAAATAAGATGAT-CAAATACAATAATGTTATATTGCTGAAAAAAAAAAG]

[+] EMBL AK120673             [ATAAGCCCCCCCGGCACCCTTATCACCACCACCACCGCCACCATGCTCTCCCTCTCCCACCCCCACCCCCACCCCGCCTCCACCACGGCGGCGGCGGCGGCGCGCCACCACCACCGCCGGAACGCCCCCTTCGCGCCGCACCACCGCCGCCGCCGCCGCTTCGCGCACCTGACGACCTCCGCCGTCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCGCGCGACAACAAGCTCCCCTTCACCCCTCCCCCCACCGCGCCGCCCGACCAGCTCTACCAGCCGTTCCATCCGCCGCCGTCGCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTCCGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGCGCTGTCGAGGGAAGGGTTCACGCCGTCGTCGATCGAGGAGGCCACGGGGATCTCCGGCGTCGAGCAGAACAGCGTCGTCGTCGCCACCCAGGTCCGCGACTCGCTCGTCGCCGACGAGGGCGGCTTCCCCGCCGAGCTCCTCCGCTACTTCGACTCCTACGGCGGGCCCGAGCTGCTCTACGAGCTCCGGTTCCTCAACGCGAGGCAGCGCGCCGACGCGGCGAGGCACGCCATCGACCGCCGCCTGGAGCCACGCGGGGTGCGCGAGCTCGCCCGCTCCATGAAGGACTTCCCGCAACGCCGCGGCGACGACGGGTGGGAGGCCTTCACGCGGGACAACCCCGGGGACTGCCTCGCCTTCGCGCGGTTCCGCCAGTCGCGTGAGGCCATCGACGCCGAGGACTCCGTGGCGGAGCTGGAGCGCGCGCTGGAGGTTGTGGACACGGAGCCCGCGAGGGCGCGGGTGGAGGCGGAGCTCGACCGCGCGAGGAGGAAGGCCGCCGGGGAGGAGGTGGACGACGAGGACGGCGCCGCCAACGCCGCCGCCGCCGCGTCGCGCCCTGCCGTGCCCGTGGTGCGGCTCATGTACGGCGAGGTGGCGGAGGCGACGACCGTGCTGCTGCTCCCGGTGGTGCGCGAGGGCGACGGCGGCGAGGCGCTCGCCCACGCGCCGAGGCGGACCAGGACGGACGCGGACCTCGGCATGGTGGAGGTGGACAAGGGGTGGACGCGGTGGGCGGTGGTGCCCGGGTGGGGCCCCGTGGCGGAGGTAGCCGGCGAGGCGGTGGTGATCGAGCTCGCCGACGGGCGCACGCTGCCGTGGCGGTCGGCGGAGGCGGAGCGGGTGCTGGTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTCGAGGACGGCATCTACGTGGTGGAGAGGGAGGGGA GGCTGGTGGTGGAGAA GGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCCGCCGCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACAAAATCTCTCCCT AATTCTCATCATT TCATAGTTCATGAATGGATTATTAGGGGAAATCAGTT GTTTCTTTTTATTACAGTATAAACTCATAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCATTGCTTAATTTCTTCAAATAAGATGAT CAAATACAATAATGT                     ]
[+] EMBL CB641852             [                                                                                              CGGCGGCGCGCCACCACCACCGCCGGAACGCCCCCTTCGCGCCGCACCACCGCCGCCGCCGCCGCTTCGCGCACCTGACGACCTCCGCCGTCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCGCGCGACAACAAGCTCCCCTTCACCCCTCCCCCCACCGCGCCGCCCGACCAGCTCTACCAGCCGTTCCATCCGCCGCCGTCGCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTCCGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGCGCTGTCGAGGGAAGGGTTCACGCCGTCGTCGATCGAGGAGGCCACGGGGATCTCCGGCGTCGAGCAGAACAGCGTCGTCGTCGCCACCCAGGTCCGCGACTCGCTCGTCGCCGACGAGGGCGGCTTCCCCGCCGAGCTCCTCCGCTACTTCGACTCCTACGGCGGGCCCGAGCTGCTCTACGAGCTCCGGTTCCTCAACGCGAGGCAGCGCGCCGACGCGGCGAGGCACGCCATCGACCGCCGCCTGGAGCCACGCGGGGTGCGCGAGCTCGCCCGCTCCATGAAGGACTTCCCGCAACGCCGCGGCGACGACGGGTGGGAGGCCTTCACGCGGGACAACCCCGGGGACTGCCTCGCCTTCGCGCGGTTCCGCCAGTCGCGTGAGGCCATCGACGCCGAGGACTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB641690             [                                                                                              CGGCGGCGCGCCACCACCACCGCCGGAACGCCCCCTTCGCGCCGCACCACCGCCGCCGCCGCCGCTTCGCGCACCTGACGACCTCCGCCGGCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCGCGCGACAACAAGCTCCCCTTCACGCCTCCCCCCACCGCGCCGCCCGACCAGCTCTACCAGCCGTTCCATCCGCCGCCGTCGCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTCCGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGCGCTGTCGAGGGAAGGGTTCACGCCGTCGTCGATCGAGGAGGCCACGGGGATCTCCGGCGTCGAGCAGAACAGCGTCGTCGTCGCCACCCAGGTCCGCGACTCGCTCGTCGCCGACGAGGGCGGCTTCCCCGCCGAGCTCCTCCGCTACTTCGACTCCTACGGCGGGCCCGAGCTGCTCTACTAGCTCCGGTTCCTCAACGCGAGGCAGCGCGCCGACGCGGCGAGGCACGCCATCGACCGCCGCCTGGAGCCACGCGGGGTGCACGAGCTCGCCCGCTCCATGAAGGACTTCCCGCAACGCCACGGCTACTACGGGAGGGAGGCCTTCACACTGGACGACCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB641649             [                                                                                              aaggaGCCCGCCACCACCACCGCCGGAACGCCCCCTGCGGGCCGCACCACCGCCGCCGCCGCCGCTTAGCGCACCTGACGACCTCCGACGGCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCACGCGACAACAAACTCCCCTTCACGCCTCCCCCCACCGCGCCGCCCGACCAACTCTACCAACCGTTCCATCCGCCGCCGTCTCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTCCGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGAGCTGTCGAGGGAAGGGTTCACGCCGTCGGCAATCAAGGAGGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB641691             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GCTCGCCCACGCGCCGAGGCGGACCAGGACGGACGCGGACCTCGGCATGGTGGAGGTGGACAAGGGGTGGACGCGGTGGGCGGTGGTGCCCGGGTGGGGCCCCGTGGCGGAGGTAGCCGGCGAGGCGGTGGTGATTGATCTCGCCGACGGGCGCACGCTCCCGTGGCGGTTGGCGGAGGCGGAGCGGGTGCTGGTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTCGAGGACGGCATTTACGTGGTGGAGAGGGAGGGGA GGCTGGTGGTGGAGAA GGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCCGCCCCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTTTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACAAAATCTCTCCCT AATTCTCATCATT TCATAGTTCATGAATGGATTATTAGGGGAAATCAGTT GTTTCTTTTTATTACAGTATAAACTCATAGGGAACATGGCAGATGCGATGCTTTGGCCTTTGTCATTGCTTAATTTCTTCAAATAAGATGAT CAAATACAATAATGTTATATTGCTGAAAAAAAAAAG]
[-] EMBL CB641853             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCGAGGCGGACCAGGACGGACGCGGACCTCGGCATGGTGGAGGTGGACAAGGGGTGGACGCGGTGGGCGGTGGTGCCCGGGTGGGGCCCCGTGGCGGAGGTAGCCGGCGAGGCGGTGGTGATTGAGCTTGCCGACGGGCGCACGCTGCCGTGGCGGTCGGCGGAGGCGGAGCGGGTTCTGGTGGTTGCGAACCCCGGGCGGAGGGAGGTGGTTGAGGACGGCATTTTCGTGGTGGAGAGGGAGGGGA GGTTGGTGGTGGAGAA GGGGAGGAAGCTGGCGGCGGAGGGCGTTGGCGAGGCCGCCGCCGAGGTGCTTGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGGCTGAGGATTTTGAGAGAGGGTTTTTTTTTTTCGGTAATGCGTAATTTTTTCTTGGTAAAAAAACACAAAATTTTTCCCT AATTCTCATCATT TCATAGTTCATGAATGGATTATTAGGGGAAATCAGGT GTTTTTTTTTATTTCAGTATAAACTCATAGGGAACATGGCAGATGCGATGCTTTGGCCTTTGTCATTGCTTAATTTCTTCCAATAAGATGAT CAAATCCAATAATGTTATATTGCTGAAAAAAAAAAG]
[-] EMBL CB641650             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGGAGGCGGAGCGGGTGCTCGTCGTGGCGAACCGCGGGCGGAGGGAGGTGGTCGAGGACGGCATCTACGTGGTGGAGAGGGAGGGGATGGCTGGTGGTGGAGAA GGGGAGGAAGATGGCGCCGGAGGGTGTCGGCGAGACCACCACCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGGGGAGGACGACATGATCAGGGACGATGAGTGGGACCGAGGATTTTGAGAGAGGGTTTTTTCTTTTCGGTAAAGCGTAATTTTCTCTTGGTAAAAAAACACAAAATCTCTCCCT AATTTTCATCATT TCATAGTTCATGAATGGATTATTAGGGGAAATCAGTT GTTTTTTTTTATTGCAGTATAAACTCATAGGGAACATGGCAGATGAGATGCTTTGGCCTTTGTCATTGGTTAATTTCTTCAAATAAGATGAT CAAATACAATAATGTT                    ]
[+] EMBL BQ908243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccGGTCGAGGACGGCATCTACGTGGTGGAGAGGGAGGGGA GGCTGNTGGTGGAGAATGGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCCGCCGCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACCNAATCTCTCCCTGAATTCTCATCATTGTCATAGTTCATGAATGGATTATTAGGGGAAATCAGTTGGTTTCTTTTTATTACAGTATAAACTCATAGGGAACNTGGCAGATGCGATGCTCTGGCCTTTGTCNTTGCTTAATTTCTTCAAATAAGATGATCCAAATACCATAATGTTAaaaaaa             ]
[+] EMBL BM418844             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccGGTGGAGAA GGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCCGCCGCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACAC AAATCTCTCCCT AATTCTCATCATT TCATAGTTCATGAATGGATTATTAGGGGAAATCAGTT GTTTCTTTTTATTACAGTATAAACTCATAGGGAACNTGGCAGATGCGATGCTCTGGCCTTTGTCAaaa                                                             ]
[+] EMBL CF324955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCGGCGAGGCCGCCGCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACAAAATCTCTCCCT AATTCTCATCATT TCATAGTTCATGAATGGATTATTAGGGGAAATCAGTT GTTTCTTTTTATTACAGTCTAAACTCATAGGGAACATGGCTGATGCCATGCTCTGGCCTTTGTCATTGCTT                                                          ]




>consensus_13367#0
ATAAGCCCCCCCGGCACCCTTATCACCACCACCACCGCCACCATGCTCTCCCTCTCCCAC
CCCCACCCCCACCCCGCCTCCACCACGGCGGCGGCGGCGGCGCGCCACCACCACCGCCGG
AACGCCCCCTTCGCGCCGCACCACCGCCGCCGCCGCCGCTTCGCGCACCTGACGACCTCC
GCCGTCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCGCGCGACAACAAGCTC
CCCTTCACCCCTCCCCCCACCGCGCCGCCCGACCAGCTCTACCAGCCGTTCCATCCGCCG
CCGTCGCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTC
CGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGCGCTGTCGAGGGAA
GGGTTCACGCCGTCGTCGATCGAGGAGGCCACGGGGATCTCCGGCGTCGAGCAGAACAGC
GTCGTCGTCGCCACCCAGGTCCGCGACTCGCTCGTCGCCGACGAGGGCGGCTTCCCCGCC
GAGCTCCTCCGCTACTTCGACTCCTACGGCGGGCCCGAGCTGCTCTACGAGCTCCGGTTC
CTCAACGCGAGGCAGCGCGCCGACGCGGCGAGGCACGCCATCGACCGCCGCCTGGAGCCA
CGCGGGGTGCGCGAGCTCGCCCGCTCCATGAAGGACTTCCCGCAACGCCGCGGCGACGAC
GGGTGGGAGGCCTTCACGCGGGACAACCCCGGGGACTGCCTCGCCTTCGCGCGGTTCCGC
CAGTCGCGTGAGGCCATCGACGCCGAGGACTCCGTGGCGGAGCTGGAGCGCGCGCTGGAG
GTTGTGGACACGGAGCCCGCGAGGGCGCGGGTGGAGGCGGAGCTCGACCGCGCGAGGAGG
AAGGCCGCCGGGGAGGAGGTGGACGACGAGGACGGCGCCGCCAACGCCGCCGCCGCCGCG
TCGCGCCCTGCCGTGCCCGTGGTGCGGCTCATGTACGGCGAGGTGGCGGAGGCGACGACC
GTGCTGCTGCTCCCGGTGGTGCGCGAGGGCGACGGCGGCGAGGCGCTCGCCCACGCGCCG
AGGCGGACCAGGACGGACGCGGACCTCGGCATGGTGGAGGTGGACAAGGGGTGGACGCGG
TGGGCGGTGGTGCCCGGGTGGGGCCCCGTGGCGGAGGTAGCCGGCGAGGCGGTGGTGATT
GAGCTCGCCGACGGGCGCACGCTGCCGTGGCGGTCGGCGGAGGCGGAGCGGGTGCTGGTG
GTGGCGAACCGCGGGCGGAGGGAGGTGGTCGAGGACGGCATCTACGTGGTGGAGAGGGAG
GGGAGGCTGGTGGTGGAGAAGGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCCGCC
GCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGAC
GAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCT
TGGTAAAAAAACACAAAATCTCTCCCTAATTCTCATCATTTCATAGTTCATGAATGGATT
ATTAGGGGAAATCAGTTGTTTCTTTTTATTACAGTATAAACTCATAGGGAACATGGCAGA
TGCGATGCTCTGGCCTTTGTCATTGCTTAATTTCTTCAAATAAGATGATCAAATACAATA
ATGTTATATTGCTGAAAAAAAAAAG

consensusID : consensus_13367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [CCCCCCGNNTGGCCTCCNGGCCGGGGGGTAAAACGGGAGGGGGAGGAACNTGTNTTTCCGGTGNGGGGAGGGANGGGGGGAGGGTTNCCAACGNCNGANGGGACAAGAAGGAGNGGAACTNGGCATGGNGGAGTGAAAAGGGTGNANCCGGTGGCGGTGTGCCCNGGTGGGGCCCCTGGCGGAGNANCCGGGGAGGNGGTGGNATTGAGTTNNCCGACGGGCGCAAAGCTNCCATGGCGNTCGGCGGAGGCCGGAGCGGATGCTGGTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTTGAGGACGGCATTTACATGGTGGAGAGGGAGGGGAGGCTGGTGGTGGAGAAGGGGAGGAAGCTGGCGGCGGAGGGCGTTGGCGAGGCCCCCGCCGAGGTGTTTGTTGTTGTCCGGCCGCCCAGGGACGAGGACGAAATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTTTTTTCGGTAATGGGTAATTTTTTTTTGGTAAAAAAACACAAAATTTTTCCCTAATTTTCATCATTTCATAGTTCATGAATGGAT]

[-] EMBL BE229175             [CCCCCCGNNTGGCCTCCNGGCCGGGGGGTAAAACGGGAGGGGGAGGAACNTGTNTTTCCGGTGNGGGGAGGGANGGGGGGAGGGTTNCCAACGNCNGANGGGACAAGAAGGAGNGGAACTNGGCATGGNGGAGTGAAAAGGGTGNANCCGGTGGCGGTGTGCCCNGGTGGGGCCCCTGGCGGAGNANCCGGGGAGGNGGTGGNATTGAGTTNNCCGACGGGCGCAAAGCTNCCATGGCGNTCGGCGGAGGCCGGAGCGGATGCTGGTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTTGAGGACGGCATTTACATGGTGGAGAGGGAGGGGAGGCTGGTGGTGGAGAAGGGGAGGAAGCTGGCGGCGGAGGGCGTTGGCGAGGCCCCCGCCGAGGTGTTTGTTGTTGTCCGGCCGCCCAGGGACGAGGACGAAATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTTTTTTCGGTAATGGGTAATTTTTTTTTGGTAAAAAAACACAAAATTTTTCCCTAATTTTCATCATTTCATAGTTCATGAATGGAT]




>consensus_13367#1
CCCCCCGNNTGGCCTCCNGGCCGGGGGGTAAAACGGGAGGGGGAGGAACNTGTNTTTCCG
GTGNGGGGAGGGANGGGGGGAGGGTTNCCAACGNCNGANGGGACAAGAAGGAGNGGAACT
NGGCATGGNGGAGTGAAAAGGGTGNANCCGGTGGCGGTGTGCCCNGGTGGGGCCCCTGGC
GGAGNANCCGGGGAGGNGGTGGNATTGAGTTNNCCGACGGGCGCAAAGCTNCCATGGCGN
TCGGCGGAGGCCGGAGCGGATGCTGGTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTTGA
GGACGGCATTTACATGGTGGAGAGGGAGGGGAGGCTGGTGGTGGAGAAGGGGAGGAAGCT
GGCGGCGGAGGGCGTTGGCGAGGCCCCCGCCGAGGTGTTTGTTGTTGTCCGGCCGCCCAG
GGACGAGGACGAAATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTT
TTTTTTTCGGTAATGGGTAATTTTTTTTTGGTAAAAAAACACAAAATTTTTCCCTAATTT
TCATCATTTCATAGTTCATGAATGGAT

consensusID : consensus_13367#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [ACTTCCCACGGCGCACCTCCTGCGTCTGCGGAGCGACGGGTGTCTGTGTGCGAACCCGGCGGAGGAGTTGTCGAGGACGCATCTACTGTGGAGAGGAGGGGAGCTTGGTTGTGGAGAAGGGGAGGAACTGCGGCGAGGGCTCAGCGAGCCCCCCGAGTGCTCTTCTTCTCGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACCAAATCTCTCCCTAATTCTCATCATTTCATAGTTCATGAATGGATTATTAGGGGAAATCAGTTGTTTCTTTTTATTACAGTATAAACTCATAGGGAACCTGGCAGATGCGATGCTCTGGCCTTTGTCTTGCTTAATTTCTTCAAATAAGATGATCAAATACCATAATGTTATATTGCTGAAAAA]

[+] EMBL BI812408             [ACTTCCCACGGCGCACCTCCTGCGTCTGCGGAGCGACGGGTGTCTGTGTGCGAACCCGGCGGAGGAGTTGTCGAGGACGCATCTACTGTGGAGAGGAGGGGAGCTTGGTTGTGGAGAAGGGGAGGAACTGCGGCGAGGGCTCAGCGAGCCCCCCGAGTGCTCTTCTTCTCGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACCAAATCTCTCCCTAATTCTCATCATTTCATAGTTCATGAATGGATTATTAGGGGAAATCAGTTGTTTCTTTTTATTACAGTATAAACTCATAGGGAACCTGGCAGATGCGATGCTCTGGCCTTTGTCTTGCTTAATTTCTTCAAATAAGATGATCAAATACCATAATGTTATATTGCTGAAAAA]




>consensus_13367#2
ACTTCCCACGGCGCACCTCCTGCGTCTGCGGAGCGACGGGTGTCTGTGTGCGAACCCGGC
GGAGGAGTTGTCGAGGACGCATCTACTGTGGAGAGGAGGGGAGCTTGGTTGTGGAGAAGG
GGAGGAACTGCGGCGAGGGCTCAGCGAGCCCCCCGAGTGCTCTTCTTCTCGCCGCCCAGG
GACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGTTTTTT
CTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACCAAATCTCTCCCTAATTCTC
ATCATTTCATAGTTCATGAATGGATTATTAGGGGAAATCAGTTGTTTCTTTTTATTACAG
TATAAACTCATAGGGAACCTGGCAGATGCGATGCTCTGGCCTTTGTCTTGCTTAATTTCT
TCAAATAAGATGATCAAATACCATAATGTTATATTGCTGAAAAA

consensusID : consensus_13367#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [CGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACAAATCTCTCCCTNATTCTCATCACTTTTCATAGTTCATGAATGGATTATTAGGGGGGAAAAATTCACGGTTTTGGTTTTTTTCCTCGTNTTTTTAATTTACCACGTATTAAAACCTTTCCACTTAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCATTGCTTAATTTTCTTCAATAAGATGATCATAAAAAAAAA]

[+] EMBL BQ906616             [CGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAACACAAATCTCTCCCTNATTCTCATCACTTTTCATAGTTCATGAATGGATTATTAGGGGGGAAAAATTCACGGTTTTGGTTTTTTTCCTCGTNTTTTTAATTTACCACGTATTAAAACCTTTCCACTTAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCATTGCTTAATTTTCTTCAATAAGATGATCATAAAAAAAAA]




>consensus_13367#3
CGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGACGACGAGTGGGACTG
AGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTCTCTTGGTAAAAAAA
CACAAATCTCTCCCTNATTCTCATCACTTTTCATAGTTCATGAATGGATTATTAGGGGGG
AAAAATTCACGGTTTTGGTTTTTTTCCTCGTNTTTTTAATTTACCACGTATTAAAACCTT
TCCACTTAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCATTGCTTAATTTTCTTC
AATAAGATGATCATAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      ATAAGCCCCCCCGGCACCCTTATCACCACCACCACCGCCACCATGCTCTCCCTCTCCCAC 60
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CCCCACCCCCACCCCGCCTCCACCACGGCGGCGGCGGCGGCGCGCCACCACCACCGCCGG 120
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      AACGCCCCCTTCGCGCCGCACCACCGCCGCCGCCGCCGCTTCGCGCACCTGACGACCTCC 180
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GCCGTCATCCTGGGCCCCGACGGGCGGCCCATCGGCGGCGGGCCGCGCGACAACAAGCTC 240
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CCCTTCACCCCTCCCCCCACCGCGCCGCCCGACCAGCTCTACCAGCCGTTCCATCCGCCG 300
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CCGTCGCCGCTCCCCGACAAGTACAAGGACCTCGACCTCGGCCAGCGCCTCGCTGTGCTC 360
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CGGGACCGCCTCGGGCTTTGGCACGAGTACGCGCCGCTCATCTCCGCGCTGTCGAGGGAA 420
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GGGTTCACGCCGTCGTCGATCGAGGAGGCCACGGGGATCTCCGGCGTCGAGCAGAACAGC 480
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GTCGTCGTCGCCACCCAGGTCCGCGACTCGCTCGTCGCCGACGAGGGCGGCTTCCCCGCC 540
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GAGCTCCTCCGCTACTTCGACTCCTACGGCGGGCCCGAGCTGCTCTACGAGCTCCGGTTC 600
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CTCAACGCGAGGCAGCGCGCCGACGCGGCGAGGCACGCCATCGACCGCCGCCTGGAGCCA 660
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CGCGGGGTGCGCGAGCTCGCCCGCTCCATGAAGGACTTCCCGCAACGCCGCGGCGACGAC 720
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GGGTGGGAGGCCTTCACGCGGGACAACCCCGGGGACTGCCTCGCCTTCGCGCGGTTCCGC 780
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      CAGTCGCGTGAGGCCATCGACGCCGAGGACTCCGTGGCGGAGCTGGAGCGCGCGCTGGAG 840
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GTTGTGGACACGGAGCCCGCGAGGGCGCGGGTGGAGGCGGAGCTCGACCGCGCGAGGAGG 900
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      AAGGCCGCCGGGGAGGAGGTGGACGACGAGGACGGCGCCGCCAACGCCGCCGCCGCCGCG 960
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      TCGCGCCCTGCCGTGCCCGTGGTGCGGCTCATGTACGGCGAGGTGGCGGAGGCGACGACC 1020
consensus_13367#1      -----------------------------------CCCCCCGNNTGGCCTCCNGGCCGGG 25
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GTGCTGCTGCTCCCGGTGGTGCGCGAGGGCGACGGCGGCGAGGCGCTCGCCCACGCGCCG 1080
consensus_13367#1      GGGTAAAACGGGAGGGGGAGGAACNTGTNTTTCCGGTGNGGGGAGGGANGGGGGGAGGGT 85
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      AGGCGGACCAGGACGGACGCGGACCTCGGCATGGTGGAGGTGGACAAGGGGTGGACGCGG 1140
consensus_13367#1      TNCCAACGNCNGANGGGACAAGAAGGAGNGGAACTNGGCATGGNGGAGTGAAAAGGGTGN 145
                                                                                   

consensus_13367#2      ------------------------------------------------------------
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      TGGGCGGTGGTGCCCGGGTGGGGCCCCGTGGCGGAGGTAGCCGGCGAGGCGGTGGTGATT 1200
consensus_13367#1      ANCCGGTGGCGGTGTGCCCNGGTGGGGCCCCTGGCGGAGNANCCGGGGAGGNGGTGGNAT 205
                                                                                   

consensus_13367#2      ---------------------ACTTCCCACGGCGCACCTCCTGCGTCTGCGGAGCGACGG 39
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GAGCTCGCCGACGGGCGCACGCTGCCGTGGCGGTCGGCGGAGGCGGAGCGGGTGCTGGTG 1260
consensus_13367#1      TGAGTTNNCCGACGGGCGCAAAGCTNCCATGGCGNTCGGCGGAGGCCGGAGCGGATGCTG 265
                                                                                   

consensus_13367#2      GTGTCTGTG---TGCGAACCCGGCGGAGGAGTTGTCGAGGACGCATCTACTGTGGAGAGG 96
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GTGGCGAAC---CGCGGGCGGAGGGAGGTGGTCGAGGACGGCATCTACGTGGTGGAGAGG 1317
consensus_13367#1      GTGGTGGCGAACCGCGGGCGGAGGGAGGTGGTTGAGGACGGCATTTACATGGTGGAGAGG 325
                                                                                   

consensus_13367#2      -AGGGGAGCTTGGTTGTGGAGAAGGGGAGGAACTGCG----GCGAGGGCTCAGCGAGCCC 151
consensus_13367#3      ------------------------------------------------------------
consensus_13367#0      GAGGGGAGGCTGGTGGTGGAGAAGGGGAGGAAGCTGGCGGCGGAGGGCGTCGGCGAGGCC 1377
consensus_13367#1      GAGGGGAGGCTGGTGGTGGAGAAGGGGAGGAAGCTGGCGGCGGAGGGCGTTGGCGAGGCC 385
                                                                                   

consensus_13367#2      CCCG-------AGTGCTCTTCTTCTCGCCGCCCAGGGACGAGGACGACATGATCAGCGAC 204
consensus_13367#3      --------------CGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGAC 46
consensus_13367#0      GCCGCCGAGGTGCTCGTCGTCGTCCGGCCGCCCAGGGACGAGGACGACATGATCAGCGAC 1437
consensus_13367#1      CCCGCCGAGGTGTTTGTTGTTGTCCGGCCGCCCAGGGACGAGGACGAAATGATCAGCGAC 445
                                       *  *  **  ********************* ************

consensus_13367#2      GACGAGTGGGACTGAGGATTTTGAGAGAGG-TTTTTTCTTCTCGGTAATGCGTAATTTTC 263
consensus_13367#3      GACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTC 106
consensus_13367#0      GACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTCTTCTCGGTAATGCGTAATTTTC 1497
consensus_13367#1      GACGAGTGGGACTGAGGATTTTGAGAGAGGGTTTTTTTTTTTCGGTAATGGGTAATTTTT 505
                       ****************************** ****** ** ********* ******** 

consensus_13367#2      TCTTGGTAAAAAAACACCAAATCTCTCCCTAATTCTCATCA--TTTCATAGTTCATGAAT 321
consensus_13367#3      TCTTGGTAAAAAAACAC-AAATCTCTCCCTNATTCTCATCACTTTTCATAGTTCATGAAT 165
consensus_13367#0      TCTTGGTAAAAAAACACAAAATCTCTCCCTAATTCTCATCA--TTTCATAGTTCATGAAT 1555
consensus_13367#1      TTTTGGTAAAAAAACACAAAATTTTTCCCTAATTTTCATCA--TTTCATAGTTCATGAAT 563
                       * *************** **** * ***** *** ******  *****************

consensus_13367#2      GGATTATTAGGGGAAA-------------TCAGTTGTTT-------CTTTTTATTACA-- 359
consensus_13367#3      GGATTATTAGGGGGGAAAAATTCACGGTTTTGGTTTTTTTCCTCGTNTTTTTAATTTACC 225
consensus_13367#0      GGATTATTAGGGGAAA-------------TCAGTTGTTT-------CTTTTTATTACA-- 1593
consensus_13367#1      GGAT-------------------------------------------------------- 567
                       ****                                                        

consensus_13367#2      --GTATAAA--------CTCATAGGGAACCTGGCAGATGCGATGCTCTGGCCTTTGTC-T 408
consensus_13367#3      ACGTATTAAAACCTTTCCACTTAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCAT 285
consensus_13367#0      --GTATAAA--------CTCATAGGGAACATGGCAGATGCGATGCTCTGGCCTTTGTCAT 1643
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      TGCTTAATTTCTTCAAATAAGATGATCAAATACCATAATGTTATATTGCTGAAAAA---- 464
consensus_13367#3      TGCTTAATTTTCTTCAATAAGATGATCATAAAAAAAAA---------------------- 323
consensus_13367#0      TGCTTAATTTCTTCAAATAAGATGATCAAATACAATAATGTTATATTGCTGAAAAAAAAA 1703
consensus_13367#1      ------------------------------------------------------------
                                                                                   

consensus_13367#2      --
consensus_13367#3      --
consensus_13367#0      AG 1705
consensus_13367#1      --