These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1695 fasta sequence [ACCATCGCCATTGCCACCACCTCTCCTATATCTCNCCCNCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAGGGGTCTGACTGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAAAAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCATCCACGAGACGACATACAACTCCATCATGAA-G-TG-CGATG-TTGATATCAGAAA--GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC-GCCAAGCAGCA-TGAAGA-TCAAGGTT-GTCGCT-CCGCCAGAG-AGGAAGTA-CAGTGTCTGGATTGGAGGATC-AATCCTTGCATC-TCTGA-GCACCTT-CCAG-CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG-TTTGATTTCAT-AAATTGATTTGAGATTCTTGAACTTTTCTAGTAAAAAAAAAGCTAGTCTGCAACCTTGCAATGTTCATCCTCTTTGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTAAGAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGTTCATTTTCAGGGTTATATAATTACATATTCTCA] [+] EMBL OS0982A [ACCATCGCCATTGCCACCACCTCTCCTATATCTCNCCCNCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACC ] [+] EMBL OSS14331A [ TTGCCACCACCTCTCCTATATCTCGCCCTCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATA CCCATTGAGCATGGAATTGTAAGCAACTng ] [+] EMBL AK070531 [ CCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAGGGGTCTGACTGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAAAAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCATCCACGAGACGACATACAACTCCATCATGAA G TG CGATG TTGATATCAGAAA GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC GCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATC AATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTT ] [+] EMBL AK101613 [ TTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAA CGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAGGGATCTGACTGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAAAAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCATCCACGAGACGACATACAACTCCATCATGAA G TG CGATG TTGATATCAGAAA GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC GCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATC AATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAACTGCTAGTCTGCAACCTTGCAATGTTCATCCTCTTTGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTAAGAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGTTCATTTTCAGGGTTATATAATTACATATTCTCA] [+] EMBL CF303253 [ CCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGA ] [+] EMBL BI805870 [ ACTCCATCATGAAGG TGCCGATG TTGATATCAG AA GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC GCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATC AATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATNNTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGCTTTGATTTCATCAANCTGATTTGAGATTCTTGAACTTTTCTAGTAAAAAAAAAa ] [+] EMBL BI807188 [ ATGAA GTTG CGATGTTTGATATCAGAAAAGGGACCTGTATGGTAACATTGTTCTCA TGGTGGATCCACCATGTT CCTGGCATC C GACCGCATGAGCAAGGAGATCACCGCGCTCGCAGCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATCNAATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACCAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCC ATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTTGAGATTCTTGAACTTTTCTA AAAAAA ] [+] EMBL AU032810 [ gcC GCCAAGCAGCATTGAAGATTCAAGGTTCGTCGCTCCCGCCAGNGAAGGAAGTANCAGTGTCTGGATTGGAGGATC AATCCTTGCATCTTCTGAGGCACCTTCCCAGNCAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTTGAGATTCTTGAACTTTTCTAAAAAAAAAAAA ] consensusID : consensus_13379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence [TCTCGCCCTCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCAGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTCGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAAACCTGGCAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAACATACGGCACCACACCTACTACAATGATCTTCGTGTAGCACCATAGGAGCCTCCCATTCTCCTTACGGAGGCTCCACTTAACCCTAATGCCACCAGGGAGATGATCACCCATATCATGTCTGAAACATCCACCGTACCACCCATGTATGTTCGCTATTCCCACGCCCTTGCTGTCCCCCCTCTATTGCCTAGCTGGAACCGTCCCTACNTGGGGTAATTAGGTCCCTTGGGCAATCCCTCGGGACCAATGGGTTGGTCCACGTCCACAACATACTCCCCCAGATCCTAACCCAATATGGTTTCACTTGCCCCCTTTTACCCGTGCATGGCCCACATTTCCCTCACCGGTTCNATTGGAATTCCTTGGCGCCTGGGGCTACCGGGGAATTTCCTCGAACCNTTGAGATTCCCCCCCTNTCATTTTGAAAANCAAATCCCCCTGGACACCTTGACACACACCGTGGGGCTTATACTCTNCACTTTCT] [+] EMBL CA753466 [TCTCGCCCTCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCAGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTCGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAAACCTGGCAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAACATACGGCACCACACCTACTACAATGATCTTCGTGTAGCACCATAGGAGCCTCCCATTCTCCTTACGGAGGCTCCACTTAACCCTAATGCCACCAGGGAGATGATCACCCATATCATGTCTGAAACATCCACCGTACCACCCATGTATGTTCGCTATTCCCACGCCCTTGCTGTCCCCCCTCTATTGCCTAGCTGGAACCGTCCCTACNTGGGGTAATTAGGTCCCTTGGGCAATCCCTCGGGACCAATGGGTTGGTCCACGTCCACAACATACTCCCCCAGATCCTAACCCAATATGGTTTCACTTGCCCCCTTTTACCCGTGCATGGCCCACATTTCCCTCACCGGTTCNATTGGAATTCCTTGGCGCCTGGGGCTACCGGGGAATTTCCTCGAACCNTTGAGATTCCCCCCCTNTCATTTTGAAAANCAAATCCCCCTGGACACCTTGACACACACCGTGGGGCTTATACTCTNCACTTTCT] consensusID : consensus_13379#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 763 fasta sequence [CAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTTATTGGCATGGAAGCTCCAGGCATCCATGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCACGGACCGCATGAGCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTTTGAGCACCTTCCAGCAGATGTGGATTTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATTGTCCACCGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACGAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759209 [CAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTTATTGGCATGGAAGCTCCAGGCATCCATGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCACGGACCGCATGAGCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTTTGAGCACCTTCCAGCAGATGTGGATTTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATTGTCCACCGGAAGTGGTTCTAGATGTGGCCTAGCTGTGTCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGAC AAAAAAATTGTTGGGTTTGATGGCTTGTCTATGGGTGTATCTACTTTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACCTTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAA ] [+] EMBL AU173561 [ gnagnTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACNCCTTGTCTATTAGCATTAGCTGGCTNTTTCGNGG NGANAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAAAAAAA ] [+] EMBL CF330446 [ GTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGGTTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13379#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [AGGGACGAGACAAGGGGGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAAAAAAAAAAA] [-] EMBL CA760928 [AGGGACGAGACAAGGGGGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 ACCATCGCCATTGCCACCACCTCTCCTATATCTCNCCCNCCCCCTCCTCCCTCCCACGCC 60 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 ATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGAT 120 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 CAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACC 180 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATT 240 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTC 300 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGA 360 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 ATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTT 420 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 CGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCC 480 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 AACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTC 540 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGAT 600 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 TCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCC 660 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 ATTCTCCGTCTTGATCTTGCTGGTAGGGGTCTGACTGATTCCCTCATGAAGATCCTGACT 720 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAA 780 consensus_13379#1 -----------------------------------------TCTCGCCCTCCCCCTCCTC 19 consensus_13379#2 ------------------------------CAGGAGCTTGAGACTGCAAAGAGCAGCTCA 30 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 AAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCA 840 consensus_13379#1 CCTCCCACGCCATTCGCCTCCTTCTTGCTGCAGCCGCCATCCCCGGTTCGGTTCTCTCCT 79 consensus_13379#2 TCAGTTGAGAAGAGCTATGA--GCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGC 88 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 TCAGTTGAGAAGAGCTATGA--GCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGC 898 consensus_13379#1 CTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTG 139 consensus_13379#2 GCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTTATTGGCATGGAAGCTCCAGGCA 148 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCA 958 consensus_13379#1 ACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTT 199 consensus_13379#2 TCCATGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGT 208 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 TCCACGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGT 1018 consensus_13379#1 TCCCGAGTATTGTCGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAG 259 consensus_13379#2 ATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCACGGACCGCATGA 268 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 ATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGA 1078 consensus_13379#1 ATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAAACCTGGCAAATACCC 319 consensus_13379#2 GCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAG 328 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAG 1138 consensus_13379#1 CATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAACATACGGCACCACACCTA 379 consensus_13379#2 AGAGGAAGTACAGTGTCTGG-ATTGGAGGATCAATCCTTGCATCTTTGAGCACCTTCCAG 387 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 AGAGGAAGTACAGTGTCTGG-ATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAG 1197 consensus_13379#1 CTACAATGATCTTCGTGTAGCACCATAGGAGCCTCCCATTCTCCTTACGGAGGCTCCACT 439 consensus_13379#2 CAGATGTGGATTTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATTGTCCACCGGAA- 446 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAA- 1256 consensus_13379#1 TAACCCTAATGCCACCAGGGAGATGATCACCCATATCATGTCTGAAACATCCACCGTACC 499 consensus_13379#2 GTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAG 506 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 GTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAG 1316 consensus_13379#1 ACCCATGTATGTTCGCTATTCCCACGCCCTTGCTGTCCCCCCTCTATTGCCTAGCTGGAA 559 consensus_13379#2 CTGGCTGTTTCATGGACGAAAAAAATTGTTGGG-TCTGATGGCTTGTCTATGGGTGTATC 565 consensus_13379#3 ----------------------------------AGGGACGAGACAAGGGGGGGTGTATC 26 consensus_13379#0 CTGGCTGTTTCATGGAC-AAAAAAATTGTTGGG-TCTGATGGCTTGTCTATGGGTGTATC 1374 consensus_13379#1 CCGTCCCTACNTGGGGTAATTAGGTCCCTTGGGCAATCCCTCGGGACCAATGGGTTGGTC 619 **** ** consensus_13379#2 TACTCTGATTAGCTCCGGTTTTTG--TGTATGCCAATATAATTAT-------TCCGTAAG 616 consensus_13379#3 TACTCTGATTAGCTCCGGTTTTTG--TGTATGCCAATATAATTAT-------TCCGTAAG 77 consensus_13379#0 TACTCTGATTAGCTCCGGTTTTTG--TGTATGCCAATATAATTAT-------TCCGTAAG 1425 consensus_13379#1 CACGTCCACAACATACTCCCCCAGATCCTAACCCAATATGGTTTCACTTGCCCCCTTTTA 679 ** * * * * * ** ******* ** ** * consensus_13379#2 TACGTGGGGAGTCAAGAA---CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGA 673 consensus_13379#3 TACGTGGGGAGTCAAGAA---CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGA 134 consensus_13379#0 TACGTGGGGAGTCAAGAA---CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGA 1482 consensus_13379#1 CCCGTGCATGGCCCACATTTCCCTCACCGGTTCNATTGGAATTCCTTGGCGCCTGGGGCT 739 **** * * * * * * * ** ** ** *** * * * consensus_13379#2 TTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 733 consensus_13379#3 TTCTTGAACTTTTCTAGTACCGCAAAAAAAAAAA-------------------------- 168 consensus_13379#0 TTCTTGAACTTTTCTAGTAAAAAAAAAGCTAGTCTGCAACCTTGCAATGTTCATCCTCTT 1542 consensus_13379#1 ACCGGGGAATTTCCTCGAACCNTTGAGATTCCCCCCCTNTCATTTTGAAAANCAAATCCC 799 * * * * * consensus_13379#2 AAAAAAAAACAAAAAAAAAAAAAAAAAAAA------------------------------ 763 consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 TGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTA 1602 consensus_13379#1 CCTGGACACCTTGACACACACCGTGGGGCTTATACTCTNCACTTTCT------------- 846 consensus_13379#2 ------------------------------------------------------------ consensus_13379#3 ------------------------------------------------------------ consensus_13379#0 AGAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGT 1662 consensus_13379#1 ------------------------------------------------------------ consensus_13379#2 --------------------------------- consensus_13379#3 --------------------------------- consensus_13379#0 TCATTTTCAGGGTTATATAATTACATATTCTCA 1695 consensus_13379#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||