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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 884 fasta sequence
[CCTCTTCTTCTCGATCACAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC-TTCATGATGGGAGGATAT-GGAAAGAAAGGATCGCTACAGC-GGGTGTGA-GGGTGATGACAGA-CC-TGCCAGTCGTGAAGGAAGGATCG-CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT-GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT-GCTTGTGCATTACTGCTT-AC-AT-GTATT-ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTGGTT-----TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF305204 [CCTCTTCTTCTCGATCATAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGAACG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCC ]
[+] EMBL CF316306 [CCTCTTCTTCTCGATCTCAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGAGGGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTAT ]
[+] EMBL CB674183 [ CAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGC ]
[+] EMBL C28289 [ CAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATACTTTCATGATGGGAGGATATGGGAAAGAAAGGATCGCTACAGCGGGGTGTTA GGGTTATGACAGA CCTTTCCAGTCGTNAAGGA ]
[+] EMBL AK120209 [ CCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGC ]
[+] EMBL AU174433 [ TCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGNTCGCTACAGC GGGTGTAA GGGTGATGACAGA CC TGCCAGTTGTGAAGGAAGGATCG CAGCTTGAGTCCGA ]
[+] EMBL AI978292 [ AGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TNNNNGTCGTnnnnnn ]
[+] EMBL AU082650 [ CTGTTCCTGCAGATAGTCCCCATGGCATTGAGGTCGNCGTCGAGTTCAAGCCGGTGGAGCNCCCAGTGGAGCCTGTCACCCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATNT GGAAAGAAAGGATCGCTACAGC GGGTNTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCGCCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGNGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCA TTCGTCAAATGCCNCGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTGGTTTTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF316307 [ GGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGACCC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCACTTCGTCAAGTGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAAaaaa ]
[+] EMBL AU174434 [ GCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT ACAAT GTATT ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTGGTT TAAAAAAAAA ]
[+] EMBL AI978293 [ ACATCCTAGCTCTGCNN GATGAATGTGACGTGCNTGAGAGCCTGCGTCCTGCCGAANNAGCTTCAGTAAATTAGATGTTGCTANNACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GCATT ACTCCACTTCGTCAAATGCCANGAGNTGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGNTGTTGGTGTGAAATGTTTCTACAANNNCGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTG ]
[+] EMBL BI797742 [ GCTTGGATGAATGTGACGGGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGTGGCTTGTGCATTACTGCTTGAC ATGGCATTGACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTaaaaaaa ]
consensusID : consensus_13382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[GAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATACTTCATGTAAGCCATTCAGTCGCTGTTTGTGGAAGAATTGTGTTGTTGGTTTGTGTTATGTAATCCACTATAAGGAGCAAGACACACAAGAGAAAATTCATTTCACCTACACACAAGAGAACCATGCATTTTATTCAACTTATGTAGAGGAAAATCCAGTGCTACAATTGCAACAACATGCCTTCTCTTACAGGTTCCCTGTTTCCTCCAGTGTCTACTTACCTAGCTATATTCCCTTACTTGATGCATCGATTGATGGATACTAGGATGGGAGGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCGTGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTGATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCAT]
[+] EMBL CA998918 [GAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATACTTCATGTAAGCCATTCAGTCGCTGTTTGTGGAAGAATTGTGTTGTTGGTTTGTGTTATGTAATCCACTATAAGGAGCAAGACACACAAGAGAAAATTCATTTCACCTACACACAAGAGAACCATGCATTTTATTCAACTTATGTAGAGGAAAATCCAGTGCTACAATTGCAACAACATGCCTTCTCTTACAGGTTCCCTGTTTCCTCCAGTGTCTACTTACCTAGCTATATTCCCTTACTTGATGCATCGATTGATGGATACTAGGATGGGAGGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCGTGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTGATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13382#0 -CCTCTTCTTCTCGATCACAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCC 59
consensus_13382#1 GAGCCTGATTCACAA--GCTGTTCCTGCAGATAGTCCGCA-TGGCATTGAGGTCGGCGTC 57
** *** * * * ** **** ** * * * * * ** *
consensus_13382#0 CAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCC 119
consensus_13382#1 GAGTTCAAGC--CGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATC--AACCTGTGAA 113
** * *** *** * * ** ** * * ** ** * ** **
consensus_13382#0 AGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGG------TTGTGGAG 173
consensus_13382#1 ATGTCCACTTCCTGAAC-CATCTATACTTCATGTAAGCCATTCAGTCGCTGTTTGTGGAA 172
* ** * * ** * * ** * * ** * *** * ** *******
consensus_13382#0 A--------CGTTGGC------------ACCCAACATGAACAGCGGAGAGCCTGATTCAC 213
consensus_13382#1 GAATTGTGTTGTTGGTTTGTGTTATGTAATCCACTATAAGGAGCAAGACACACAAGAGAA 232
***** * *** ** * *** * * *
consensus_13382#0 AAGCTGTT---CCTGCAGATAG------TCCGCATGGCATTGAGGTCGGCGTCGAGTTCA 264
consensus_13382#1 AATTCATTTCACCTACACACAAGAGAACCATGCATTTTATTCAACTTA-TGTAGAGGAAA 291
** ** *** ** * * **** *** * * ** *** *
consensus_13382#0 AGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAA---CCTGTGA-----AATG 316
consensus_13382#1 ATCCAGTGCTACAATTGCAACAACATGCCTTCTCTTACAGGTTCCCTGTTTCCTCCAGTG 351
* ** *** ** * * ** * * * * ***** * **
consensus_13382#0 TCCACTTCCTGAACCAT----CTATACTTCATG---------------------ATGGGA 351
consensus_13382#1 TCTACTTACCTAGCTATATTCCCTTACTTGATGCATCGATTGATGGATACTAGGATGGGA 411
** **** * * * ** * ***** *** ******
consensus_13382#0 GGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCG 411
consensus_13382#1 GGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCG 471
************************************************************
consensus_13382#0 TGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTAC 471
consensus_13382#1 TGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTAC 531
************************************************************
consensus_13382#0 CGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTG 531
consensus_13382#1 CGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTG 591
************************************************************
consensus_13382#0 ATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGT 591
consensus_13382#1 ATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGT 651
************************************************************
consensus_13382#0 TGCTAGTACAACTCTATTTTGCCTCATGTTGTTGTGCTTGTGCATTACTGCTTACATGTA 651
consensus_13382#1 TGCTAGTACAACTCTATTTTGCCTCAT--------------------------------- 678
***************************
consensus_13382#0 TTACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAA 711
consensus_13382#1 ------------------------------------------------------------
consensus_13382#0 CTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTAC 771
consensus_13382#1 ------------------------------------------------------------
consensus_13382#0 TACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGAT 831
consensus_13382#1 ------------------------------------------------------------
consensus_13382#0 TTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 884
consensus_13382#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||