cluster # 13387

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Oryza sativa
cluster # 13387 cluster # 13387 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13387#0 length = 1529 sequences # 6
consensus_13387#1 length = 1130 sequences # 5

consensus_13387#2 length = 282 sequences # 1
consensus_13387#3 length = 271 sequences # 1

consensusID : consensus_13387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1529
fasta sequence

                              [AAGAGGAGTACTAGGTAGAGAGACGCTTGGCTCCGTGGCTCGTTGGTTGATTGCTTAAAGGCCACTTGATCGCTGCTCGATCTGCTGCCTCCCTCGCGCGCGCGCACCGTACGTGTGTGTGTGCAGTAGTTCTCGGCACGCTTCCCCATATATACCCCCTGGATCGGGCGCCCAGCCGGCCGCCTCGATCGACAGAGAGATCGATAGACAGATACACGCCGGCAAGGGCAACGAACCCAGCGGCAGGTAGCTGCTCGCGTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGGTGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAATCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGGGGCAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTTCATGA-GATCCTAGGCAAC-AGGTGGTCGCAAATCGCGTCGCAC-TTTCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTGAGGCAGCGCGGCATCGACCCCAGCACCCACCAGCCCATCTCCACGGCTGCTGCTGCTGCGGCGGCGGCATTGGACACGTCGACGCAGGACCAGAAGCCGCCGGCCACCGCCGACGGCTTCGCCCTGAAGCAGCAGCAGCAGGTGTTCGACCCGTTCCCGGTGATCGACAGCTTCGGCAGCGGGTTCGACGCCACGGGCATGCCATTGTACGGCCACCTCGGCGGCAAGGACGCGGCCGGGTTCGTGGACTACAGCAGCGTGCTTGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGAACTGCGGCGTGGGCGCGCCGGAGGTGAACAATGCGCTCGAGAGCGAGCCGCTGCATTGGGCCACCGAGAGCAAGGTCGAGCCTTTCGTGGGCTACGGCGAGGGGGACGCCATGGAGCACAAGTTCGGGCTGCCCTGCCATGGGCAGCAAGAGCAGGGCATGACACATTTCGACTTCGACGTCAGCCGGAGCATGGTGGTC-GGCGACTTCAAC-TTCGAGTACTTCCGATGAGGTTCTTGTGAATTAAGCCATTATCGTATATACAATATTCTTCCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGAGTAGAGACTGTACTCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACACCTTTTTATGATTTCTGCAT-GGGTAAAAATATAAATAAAGGGTATAGAAATGTGAACACT-GTGTAGTTAATTACTACTATGAG-ATTTTGTAAGAATAATT-AAGTTTCTTACACTTGTAC-TCTGTAAGTTGCTGCCACTGGGAGGACTGTGTAACGTGTATTCCTCTCCTGAAGAAGGAACAATCAAGGTTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK111782             [AAGAGGAGTACTAGGTAGAGAGACGCTTGGCTCCGTGGCTCGTTGGTTGATTGCTTAAAGGCCACTTGATCGCTGCTCGATCTGCTGCCTCCCTCGCGCGCGCGCACCGTACGTGTGTGTGTGCAGTAGTTCTCGGCACGCTTCCCCATATATACCCCCTGGATCGGGCGCCCAGCCGGCCGCCTCGATCGACAGAGAGATCGATAGACAGATACACGCCGGCAAGGGCAACGAACCCAGCGGCAGGTAGCTGCTCGCGTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGGTGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAATCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGGGGCAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTGCATGA GATCCTAGGCAAC AGGTGGTCGCAAATCGCGTCGCAC TTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTGAGGCAGCGCGGCATCGACCCCAGCACCCACCAGCCCATCTCCACGGCTGCTGCTGCTGCGGCGGCGGCATTGGACACGTCGACGCAGGACCAGAAGCCGCCGGCCACCGCCGACGGCTTCGCCCTGAAGCAGCAGCAGCAGGTGTTCGACCCGTTCCCGGTGATCGACAGCTTCGGCAGCGGGTTCGACGCCACGGGCATGCCATTGTACGGCCACCTCGGCGGCAAGGACGCGGCCGGGTTCGTGGACTACAGCAGCGTGCTTGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGAACTGCGGCGTGGGCGCGCCGGAGGTGAACAATGCGCTCGAGAGCGAGCCGCTGCATTGGGCCACCGAGAGCAAGGTCGAGCCTTTCGTGGGCTACGGCGAGGGGGACGCCATGGAGCACAAGTTCGGGCTGCCCTGCCATGGGCAGCAAGAGCAGGGCATGACACATTTCGACTTCGACGTCAGCCGGAGCATGGTGGTC GGCGACTTCAAC TTCGAGTACTTCCGATGAGGTTCTTGTGAATTAAGCCATTATCGTATATACAATATTCTTCCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGAGTAGAGACTGTACTCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACACCTTTTTATGATTTCTGCAT GGGTAAAAATATAAATAAAGGGTATAGAAATGTGAACACT GTGTAGTTAATTACTACTATGAG ATTTTGTAAGAATAATT AAGTTTCTTACACTTGTAC TCTGTAAGTTGCTGCCACTGGGAGGACTGTGTAACGTGTATTCCTCTCCTGAAGAAGGAACAATCAA                                  ]
[+] EMBL OSS12691A            [                                                                                                                                                                                                           ATAGACAGATACACGCCGGCAAGGGCAACGAACCCAGCGGCAGGTAGCTGCTCGCGTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGGTGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAATCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCAGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCGGGGCAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTNCATGA GATCCTAGGCAAC AGGTGGTCGCAAATCGCGTCGNAC TTTCCGGGGAGGACGGACAACGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS12518A            [                                                                                                                                                                                                           ATAGACAGATACACGCCGGCAAGGGCAACGAACCCAGCGGCAGGTAGCTGCTCGCNTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGGTGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAATCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCAGAGGTGCGGCAAGAGCTGCAGG TGCGGTGGATCAACTACCTGCGACCCGACCTGAAGCGGGGCAGTTTCTCGCAGCAGGAGGAGGACGNCATCGTCGGCCTTCATGA GATNCTAGGCAAC AGGTGGTCG AAATCGCGTCG ACTTTTCCGGGGAGGACGGACAACGAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C74379               [                                                                                                                                                                                                               ACAGATACACGCCGGCAAGGGCAACGAACCCAGCGGCAGGTAGCTGCTCGCGTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGGTGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAATCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCAGAGGTGCGGCAAGAGCTGCAGG TGCGGTGGATCAACTACCTGCGCCCNGACCTGAAGCGGGGCAGTTTCTGGCAGCAGGANGAGG CGGCATNGTCGG CTTCATTAGGATCCTANGCAACAAGTTGTTCGNAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA763930             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTTCTGGAACAGCTGCCTCAAGAAGAAGCTGAGGCAGCGCGGCATCGACCCCAGCACCCACCAGCCCATCTCCACGGCTACTGCTGCTGCGGCGGCGGCATTGGACACGTCGACGCAGGACCAGAAGCCGCCGGCCACCGCCGACGGCTTCGCCCTGAAGCAGCAGCAGCAGGTGTTCGACCCGTTCCCGGTGATCGACAGCTTCGGCAGCGGGTTCGACGCCACGGGCATGCCATTGTACGGCCACCTCGGCGGCATGGACGCGGCCGGGTTCGTGGACTACAGCAGCGTGCTTGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGAACTGCGGCGTGGGCGCGCCGGAGGTGAACAATGCGCTCGAGAGCGAGCCGCTGCATTGGGCCACCGAGAGCAAGGTCGAGCCTTTCGTGGGCTACGGCGAGGGGGACGCCATGGAGCACAAGTTCGGGCTGCCCTGCCATGGGCAGCAAGAGCAGGGCATGACACATTTCGATTTCGACGTCAGCCGGAGCATGGTGGTC GGCGACTTCAACTTTCGAGTACTTNCGATGANGNTCTTGTGAATTAAGCCATTATCGTATATACAATATTCTTNCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGAGTAGAGACTGGACTCTGGTAATTTTCACTAGTCCATACTCCTTAATTAACACCNTTTTATGATTTCTGCATGGGGTAAAAATAT AATNAAGGGTTTAGAAATGNGAACACTGGGGNAGTTAATTACTACTATGAGAATTTTGTAANANNAATTAAAGTTT TTAAACTTGGACTTNTGTAAGTTGCTGCCACT                                                                                  ]
[+] EMBL AU172817             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GACACATTTCGACTTCGACGTCAGCCGGAGCATGGTGGTCGGGCGACTTCAAC TTCGAGTACTTCCGATGAGGTTNTTGTGAATTAAGCCATTATCGTATATACAATATTCTTCCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGAGTANAGACTGTACTCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACNCCTTTTTATGATTTCTGCAT GGGTAAAAATATAAATAAAGGGTATAGAAATGTGAACNCT GTGTAGTTAATTACTACTATGAG ATTTTGTAAGAATAATT AAGTTTNTTACACTTGTAC TCTGTAAGTTGCTGCCNCTGGGAGGACTGTGTAACGTGTATTCCTCTCCTGAAGAAGGAACAATCAAGGTTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13387#0
AAGAGGAGTACTAGGTAGAGAGACGCTTGGCTCCGTGGCTCGTTGGTTGATTGCTTAAAG
GCCACTTGATCGCTGCTCGATCTGCTGCCTCCCTCGCGCGCGCGCACCGTACGTGTGTGT
GTGCAGTAGTTCTCGGCACGCTTCCCCATATATACCCCCTGGATCGGGCGCCCAGCCGGC
CGCCTCGATCGACAGAGAGATCGATAGACAGATACACGCCGGCAAGGGCAACGAACCCAG
CGGCAGGTAGCTGCTCGCGTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGG
TGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAA
TCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCA
GAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCG
GGGCAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTTCATGAGATCCTAGGCAA
CAGGTGGTCGCAAATCGCGTCGCACTTTCCGGGGAGGACGGACAACGAGATCAAGAACTT
CTGGAACAGCTGCCTCAAGAAGAAGCTGAGGCAGCGCGGCATCGACCCCAGCACCCACCA
GCCCATCTCCACGGCTGCTGCTGCTGCGGCGGCGGCATTGGACACGTCGACGCAGGACCA
GAAGCCGCCGGCCACCGCCGACGGCTTCGCCCTGAAGCAGCAGCAGCAGGTGTTCGACCC
GTTCCCGGTGATCGACAGCTTCGGCAGCGGGTTCGACGCCACGGGCATGCCATTGTACGG
CCACCTCGGCGGCAAGGACGCGGCCGGGTTCGTGGACTACAGCAGCGTGCTTGACGTGTC
GGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGAACTGCGGCGTGGG
CGCGCCGGAGGTGAACAATGCGCTCGAGAGCGAGCCGCTGCATTGGGCCACCGAGAGCAA
GGTCGAGCCTTTCGTGGGCTACGGCGAGGGGGACGCCATGGAGCACAAGTTCGGGCTGCC
CTGCCATGGGCAGCAAGAGCAGGGCATGACACATTTCGACTTCGACGTCAGCCGGAGCAT
GGTGGTCGGCGACTTCAACTTCGAGTACTTCCGATGAGGTTCTTGTGAATTAAGCCATTA
TCGTATATACAATATTCTTCCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGAGT
AGAGACTGTACTCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACACCTTTTTATGA
TTTCTGCATGGGTAAAAATATAAATAAAGGGTATAGAAATGTGAACACTGTGTAGTTAAT
TACTACTATGAGATTTTGTAAGAATAATTAAGTTTCTTACACTTGTACTCTGTAAGTTGC
TGCCACTGGGAGGACTGTGTAACGTGTATTCCTCTCCTGAAGAAGGAACAATCAAGGTTC
TCCCTAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1130
fasta sequence

                              [GGACAGGACACGGCGCGGGTACAATACAATACAAGTAGCCTCCACTTCTTGCTTGCGTCTTCTTGTCCCTCCCTTGTCATCCAGAGGAGATCGAGGAGGTGTTGTGTTGGTGTGTGTGGAGGATGGGGAGGACGCCGTGCTGCGACAGGGAGGCGGTGAAGAGGGGCCCGTGGTCGCCGGAGGAGGACGACGCGCTGCGCGACTACATCAACCGCCACGGCACCGCCGGCAACTGGATCTCCCTCCCCAACAAGGCCGGGTTGAGGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCAACTACCTCCGCCCCGACATCCGCCATGGCGCCTTCACCGACGAGGAGGACGCCATCATCACCTCCCTCTACTCCAAGCTCGGCAGCAAGTGGTCGACCATCGCGGCGCAGCTGGAGAGGAGGACGGACAACGACGTCAAGAACCACTGGAACACCAAGCTCAAGCGCCGCCTCGCCGCCGCCGCCGCCTGCACGCCCTTACTGCCGCTCCCGGCGCCGCCGCCCCTCGCCGCCACGCACACGTCGCCGTCGTCGTCGCTGCTGCTCCTCCCGCCGCTCGCCGTACCGACCG-TCAAGACCGA-GGCGTACACCTGCGACGACTTCCTGCAGCAGCTGCTGCCGACCGCCACCGCCGCCACGGCGCTCCGGGATCCCTTCGCCGACGGCGCCGCCACGGACGGCGGCTCGACGTCCGCCTCCGCCGCGTCGTCGGGGTCCAACTGGTCGGCGGACACCGGCGTCGTCGTCGTCGGTGGCGGCGGCGGCGGCGGGCTGTTCCCGGAATTCTGCATGAGCTCCGACGACCTCGCCGGCGCCGCCACGGCGGAGGACGACCACTTCATCGGCGGCGGCTACTACTACCCTCTCGATCTGAGCTTGTCATCATCACTAGTGTAGTGAACTCGTGCGTTTCAAAGATCAAACACTAGTGTTAGGATCAGTACATGCCACATCTCCGCGTGTTCCTGCGAGATTGGTCGATCGATCAAACATCGCGTAATTACAAGAAGCGTGTAGTGTACTTGAACATGAGAAAATTCATCAGGTGCAAAGTTAGANCACTTGCTATGAACAAAAAGCTACTACTAGTATTTTGCTGTGCTTCAAAAA]

[+] EMBL AK109125             [GGACAGGACACGGCGCGGGTACAATACAATACAAGTAGCCTCCACTTCTTGCTTGCGTCTTCTTGTCCCTCCCTTGTCATCCAGAGGAGATCGAGGAGGTGTTGTGTTGGTGTGTGTGGAGGATGGGGAGGACGCCGTGCTGCGACAGGGAGGCGGTGAAGAGGGGCCCGTGGTCGCCGGAGGAGGACGACGCGCTGCGCGACTACATCAACCGCCACGGCACCGCCGGCAACTGGATCTCCCTCCCCAACAAGGCCGGGTTGAGGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCAACTACCTCCGCCCCGACATCCGCCATGGCGCCTTCACCGACGAGGAGGACGCCATCATCACCTCCCTCTACTCCAAGCTCGGCAGCAAGTGGTCGACCATCGCGGCGCAGCTGGAGAGGAGGACGGACAACGACGTCAAGAACCACTGGAACACCAAGCTCAAGCGCCGCCTCGCCGCCGCCGCCGCCTGCACGCCCTTACTGCCGCTCCCGGCGCCGCCGCCCCTCGCCGCCACGCACACGTCGCCGTCGTCGTCGCTGCTGCTCCTCCCGCCGCTCGCCGTACCGACCG TCAAGACCGA GGCGTACACCTGCGACGACTTCCTGCAGCAGCTGCTGCCGACCGCCACCGCCGCCACGGCGCTCCGGGATCCCTTCGCCGACGGCGCCGCCACGGACGGCGGCTCGACGTCCGCCTCCGCCGCGTCGTCGGGGTCCAACTGGTCGGCGGACACCGGCGTCGTCGTCGTCGGTGGCGGCGGCGGCGGCGGGCTGTTCCCGGAATTCTGCATGAGCTCCGACGACCTCGCCGGCGCCGCCACGGCGGAGGACGACCACTTCATCGGCGGCGGCTACTACTACCCTCTCGATCTGAGCTTGTCATCATCACTAGTGTAGTGAACTCGTGCGTTTCAAAGATCAAACACTAGTGTTAGGATCAGTACATGCCACATCTCCGCGTGTTCCTGCGAGATTGGTCGATCGATCAAACATCGCGTAATTACAAGAAGCGTGTAGTGTACTTGAACATGAGAAAATTCATCAGGTGCA                                                            ]
[+] EMBL CB682826             [                       ATACCCTTCAAGTAGCCTCCACTTCTTGCTTGCGTCTTCTTGTCCCTCCCTTGTCATCCAGAGGAGATCGAGGAGGTGTTGTGTTGGTGTGTGTGGAGGATGGGGAGGACGCCGTGCTGCGACAGGGAGGCGGTGAAGAGGGGCCCGTGGTCGCCGGAGGAGGACGACGCGCTGCGCGACTACATCAACCGCCACGGCACCGCCGGCAACTGGATCTCCCTCCCCAACAAGGCCGGGTTGAGGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCAACTACCTCCGCCCCGACATCCGCCATGGCGCCTTCACCGACGAGGAGGACGCCATCATCACCTCCCTCTACTCCAAGCTCGGCAGCAAGTGGTCGACCATCGCGGCGCAGCTGGAGAGGAGGACGGACAACGACGTCAAGAACCACTGGAACACCAAGCTCAAGCGCCGCCTCGCCGCCGCCGCCGCCTGCACGCCCTTACTGCCGCTCCCGGCGCCGCCGCCCCTCGCCGCCACGCACACGTCGCCGTCGTCGTCGCTGCTGCTCCTCCCGCCGCTCGCCGTACCGACCG TCAAGACCGA GGCGTACACCTGCGACGACTTCCTGCAGCAGCTGCTGCCGACCGCCACCGCCGCCACGGCGCTCCGGGATCCCTTCGCCGACGGCGCCGCCCCGGACTGCGGCTCGACGTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C72014               [                                                                                                                                                                                                                                                                          AGGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCAACTACCTCCGCCCCGACATCCGCCATGGCGCCTTCACCGACGAGGAGGACGCCATCATCACCTCCCTCTACTCCAAGCTCGGCAGCAAGTGGTCGACCATCGCGGCGCAG TGGAGAGGAGGACGGACAACGACGTCAAGAACCACTGGAACACCAAGCTCAAGCGCCGCCTCGCCGCCGCCGCCGCCTGCACGCCCTTACTGCCGCTCCCGGCGCCGCCGCCCCTCGCNGCCACGCACACGTCGCCGTCGTCGTCGNTGCTGTTCCTCCCGCCGTTCG CGTACCGACCGTTAAAGACCGAGGGNGTAAACtttnga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB682827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGCTCGCCGTACCGACCG TCAAGACCGA GGCGTACACCTGCGACGACTTCCTGCAGCAGCTGCTGCCGACCGCCACCGCCGCCAGGGCGTTCAGGGATCCCTTCGCCGACGGCGCCGCCACGGACGGCGGCTCGACGTCCGCCTCCGCCGCGTTGTCGGGGTCCAACTGGTCGGCGGACACCGGTGTCGTCGTCGTCGGTGGCGGCGGCGGCGGCGGACTGTTCCCGGAATTCTGCATGAGCTCCGAAGACCTCGCCGGCGCCGCCACGGCGGAGGACGACCACTTCATCGGCGGCGGGTTCTACTACCCTCTCGATCCGAGCTCGTCATCATCAGTAGTGTAGCGAACTCGTGCGTTTCAAAGATCAAACACTAGTGTTAGGATCAGTACATGCCACATCTCCGCGTGTTCCTCCGAGATTGG                                                                                                                                     ]
[+] EMBL AU082307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGTGTTCCTGCGAGATTGGTCGATCGATCAAACATCGCGTAATTACAAGAAGCGTGTAGTGTACTTGAACATGAGAAAATTCATCAGGTGCAAAGTTAGANCACTTGCTATGAACAAAAAGCTACTACTAGTATTTTGCTGTGCTTCAAAAA]




>consensus_13387#1
GGACAGGACACGGCGCGGGTACAATACAATACAAGTAGCCTCCACTTCTTGCTTGCGTCT
TCTTGTCCCTCCCTTGTCATCCAGAGGAGATCGAGGAGGTGTTGTGTTGGTGTGTGTGGA
GGATGGGGAGGACGCCGTGCTGCGACAGGGAGGCGGTGAAGAGGGGCCCGTGGTCGCCGG
AGGAGGACGACGCGCTGCGCGACTACATCAACCGCCACGGCACCGCCGGCAACTGGATCT
CCCTCCCCAACAAGGCCGGGTTGAGGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCA
ACTACCTCCGCCCCGACATCCGCCATGGCGCCTTCACCGACGAGGAGGACGCCATCATCA
CCTCCCTCTACTCCAAGCTCGGCAGCAAGTGGTCGACCATCGCGGCGCAGCTGGAGAGGA
GGACGGACAACGACGTCAAGAACCACTGGAACACCAAGCTCAAGCGCCGCCTCGCCGCCG
CCGCCGCCTGCACGCCCTTACTGCCGCTCCCGGCGCCGCCGCCCCTCGCCGCCACGCACA
CGTCGCCGTCGTCGTCGCTGCTGCTCCTCCCGCCGCTCGCCGTACCGACCGTCAAGACCG
AGGCGTACACCTGCGACGACTTCCTGCAGCAGCTGCTGCCGACCGCCACCGCCGCCACGG
CGCTCCGGGATCCCTTCGCCGACGGCGCCGCCACGGACGGCGGCTCGACGTCCGCCTCCG
CCGCGTCGTCGGGGTCCAACTGGTCGGCGGACACCGGCGTCGTCGTCGTCGGTGGCGGCG
GCGGCGGCGGGCTGTTCCCGGAATTCTGCATGAGCTCCGACGACCTCGCCGGCGCCGCCA
CGGCGGAGGACGACCACTTCATCGGCGGCGGCTACTACTACCCTCTCGATCTGAGCTTGT
CATCATCACTAGTGTAGTGAACTCGTGCGTTTCAAAGATCAAACACTAGTGTTAGGATCA
GTACATGCCACATCTCCGCGTGTTCCTGCGAGATTGGTCGATCGATCAAACATCGCGTAA
TTACAAGAAGCGTGTAGTGTACTTGAACATGAGAAAATTCATCAGGTGCAAAGTTAGANC
ACTTGCTATGAACAAAAAGCTACTACTAGTATTTTGCTGTGCTTCAAAAA

consensusID : consensus_13387#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [CGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGG]

[+] EMBL BP184885             [CGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGG]




>consensus_13387#2
CGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCA
GCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACT
GGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGG
CCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTG
GCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGG

consensusID : consensus_13387#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACNCCTTTTTATGATTTNTGCATGGGTAAAAATATAAATAAAGGGTATAGAAATGTGAACNCTGNGTAGTTAATTACTACTATGAGATTTTGTAAGAATAATTAAGTTTNTTACNCTTGTACTCTGTAAGTTGCTGCCNCTGGGAGGACTGTGTAACGGTGTATTCCTNTCCTGAANAAGGAACAATCAAGGTTNTCNCTAATTGCTTGCCCNAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174010             [TCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACNCCTTTTTATGATTTNTGCATGGGTAAAAATATAAATAAAGGGTATAGAAATGTGAACNCTGNGTAGTTAATTACTACTATGAGATTTTGTAAGAATAATTAAGTTTNTTACNCTTGTACTCTGTAAGTTGCTGCCNCTGGGAGGACTGTGTAACGGTGTATTCCTNTCCTGAANAAGGAACAATCAAGGTTNTCNCTAATTGCTTGCCCNAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_13387#3
TCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACNCCTTTTTATGATTTNTGCATGG
GTAAAAATATAAATAAAGGGTATAGAAATGTGAACNCTGNGTAGTTAATTACTACTATGA
GATTTTGTAAGAATAATTAAGTTTNTTACNCTTGTACTCTGTAAGTTGCTGCCNCTGGGA
GGACTGTGTAACGGTGTATTCCTNTCCTGAANAAGGAACAATCAAGGTTNTCNCTAATTG
CTTGCCCNAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13387#0      AAGAGGAGTACTAGGTAGAGAGACGCTTGGCTCCGTGGCTCGTTGGTTGATTGCTTAAAG 60
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      GCCACTTGATCGCTGCTCGATCTGCTGCCTCCCTCGCGCGCGCGCACCGTACGTGTGTGT 120
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      GTGCAGTAGTTCTCGGCACGCTTCCCCATATATACCCCCTGGATCGGGCGCCCAGCCGGC 180
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      CGCCTCGATCGACAGAGAGATCGATAGACAGATACACGCCGGCAAGGGCAACGAACCCAG 240
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      CGGCAGGTAGCTGCTCGCGTGTCGGGCGGGAATGGGACGGCACGCGTGCTCTGCCGCCGG 300
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      TGTCCAGCAGAAGCTGCGCAAGGGGCTCTGGTCTCCCGAGGAAGACGAGAAGCTCTACAA 360
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      TCACATCTACCGCTACGGCGTCGGTTGCTGGAGCTCCGTTCCCAAGCTCGCAGGGCTCCA 420
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      ------------------------------------------------------------
                                                                                   

consensus_13387#0      GAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTGCGCCCCGACCTGAAGCG 480
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      --------------------------------------GGACAGGACACGGCGCGGGTAC 22
                                                                                   

consensus_13387#0      GGGCAGCTTCTCGCAGCAGGAGGAGGACGCCATCGTCGGCCTTCATGAGATCCTAGGCAA 540
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      AATACAATACAAGTAGCCTCCACTTCTTGCTTGCGTCTTCTTGTCCCTCCCTTGTCATCC 82
                                                                                   

consensus_13387#0      CAGGTGGTCGCAAATCGCGTCGCACTTTCCGGGGAGGACGGACAACGAGATCAAGAACTT 600
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      AGAGGAGATCGAGGAGGTGTTGTGTTGGTGTGTGTGGAGGATGGGGAGGACGCCGTGCTG 142
                                                                                   

consensus_13387#0      CTGGAACAGCTGCCTCAAGAAGAAGCTGAGGCAGCGCGGCATCGACCCCAGCACCCACCA 660
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CGACAGGGAGGCGGTGAAGAGGGGCCCGTGGTCGCCGGAGGAGGACGACGCGCTGCGCGA 202
                                                                                   

consensus_13387#0      GCCCATCTCCACGGCTGCTGCTGCTGCGGCGGCGGCATTGGACACGTCGACGCAGGACCA 720
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CTACATCAACCGCCACGGCACCGCCGGCAACTGGATCTCCCTCCCCAACAAGGCCGGGTT 262
                                                                                   

consensus_13387#0      GAAGCCGCCGGCCACCGCCGACGGCTTCGCCCTGAAGCAGCAGCAGCAGGTGTTCGACCC 780
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      GAGGAGGTGCGGCAAGAGCTGCAGGCTGCGGTGGCTCAACTACCTCCGCCCCGACATCCG 322
                                                                                   

consensus_13387#0      GTTCCCGGTGATCGACAGCTTCGGCAGCGGGTTCGACGCCACGGGCATGCCATTGTACGG 840
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CCATGGCGCCTTCACCGACGAGGAGGACGCCATCATCACCTCCCTCTACTCCAAGCTCGG 382
                                                                                   

consensus_13387#0      C--CACCTCGGCGGCAAGGACGCGGCCGGGTTCGTGGACTACAGCAGCGTGCTTGACGTG 898
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CAGCAAGTGGTCGACCATCGCGGCGCAGCTGGAGAGGAGGACGGACAACGACGTCAAGAA 442
                                                                                   

consensus_13387#0      TCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGAACTGCGGCGTG 958
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CCACTGGAACACCAAGCTCAAGCGCCGCCTCGCCGCCGCCGCCGCCTGCACGCCCTTACT 502
                                                                                   

consensus_13387#0      GGCGCGCCGGAGGTGAACAATGCGCTCGAGAGCGAGCCGCTGCATTGGGCCACCGAGAGC 1018
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      GCCGCTCCCGGCGCCGCCGCCCCTCGCCGCCACGCACACGTCGCCGTCGTCGTCGCTGCT 562
                                                                                   

consensus_13387#0      AAGGTCGAGCCTTTCGTGGGCTACGGCGAGGGGGACGCCATGGAGCACAAGTTCGGGCTG 1078
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      GCTCCTCCCGCCGCTCGCCGTACCGACCGTCAAGACCGAGGCGTACACCTGCGACGACTT 622
                                                                                   

consensus_13387#0      CCCTGCCATGGGCAGCAAGAGCAGGGCATGACACATTTCGACTTCGACGTCAGCCGGAGC 1138
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CCTGCAGCAGCTGCTGCCGACCGCCACCGCCGCCACGGCGCTCCGGGATCCCTTCGCCGA 682
                                                                                   

consensus_13387#0      ATGGTGGTCGGCGACTTCAACTTCGAGTACTTCCGATGAGGTTCTTGTGAATTAAGCCAT 1198
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      CGGCGCCGCCACGGACGGCGGCTCGACGTCCGCCTCCGCCGCGTCGTCGGGGTCCAACTG 742
                                                                                   

consensus_13387#0      TATCGTATATACAATATTCTTCCAAGGCATTTTACACAGAGGGCATGACCAACCGGGAGA 1258
consensus_13387#3      ------------------------------------------------------------
consensus_13387#2      ------------------------------------------------------------
consensus_13387#1      GTCGGCGGACACCGGCGTCGTCGTCGTCGGTGGCGGCGGCGGCGGCGGGCTGTTCCCGGA 802
                                                                                   

consensus_13387#0      GTAGAGACTGTACTCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACACCT--TTTT 1316
consensus_13387#3      -------------TCTGTTAATTTTCACTAGTCCATACTCCTTAATTAACNCCT--TTTT 45
consensus_13387#2      ---------------CGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCG 45
consensus_13387#1      ATTCTGCATGAGCTCCGACGAC-CTCGCCGGCGCCGCCACGGCGGAGGACGACCACTTCA 861
                                       *       *     *  *   * *         *  *   **  

consensus_13387#0      ATGATTTCTGCATGGGTAAAAAT-ATAAATAAAGGGTATAGAAAT-GTGAACACTGTG-- 1372
consensus_13387#3      ATGATTTNTGCATGGGTAAAAAT-ATAAATAAAGGGTATAGAAAT-GTGAACNCTGNG-- 101
consensus_13387#2      TCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCT-ACGGCGAGAGCT-- 102
consensus_13387#1      TCGGCGGCGGCTACTACTACCCTCTCGATCTGAGCTTGTCATCATCACTAGTGTAGTGAA 921
                         *       *                                 *          *    

consensus_13387#0      -TAGTTAATTACTACTATGAGATTT---TGTAAGAATAATTAA---GTTTCTTACACTTG 1425
consensus_13387#3      -TAGTTAATTACTACTATGAGATTT---TGTAAGAATAATTAA---GTTTNTTACNCTTG 154
consensus_13387#2      -CCAGCAACAGCAGCAACTGGACCTG--CGCCGAGGTGAGCAATGTGCTCGACAGCGAGG 159
consensus_13387#1      CTCGTGCGTTTCAAAGATCAAACACTAGTGTTAGGATCAGTAC-ATGCCACATCTCCGCG 980
                                  *    *    *       *      * *  *    *            *

consensus_13387#0      TACTCTG-TAAGTTGCTGCCACTGG----GAGGACTGTGTAAC-------G-TGTATTCC 1472
consensus_13387#3      TACTCTG-TAAGTTGCTGCCNCTGG----GAGGACTGTGTAAC-------GGTGTATTCC 202
consensus_13387#2      TGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAA-------GGCAGAGCCC 212
consensus_13387#1      TGTTCCTGCGAGATTGGTCGATCGAT--CAAACATCGCGTAATTACAAGAAGCGTGTAGT 1038
                       *  **      *      *    *      *       *  *                  

consensus_13387#0      TCTCCTGAAGAAGGAACAATCA-AGGTTCTCCCTAA----------AAAAAAAAAAAAAA 1521
consensus_13387#3      TNTCCTGAANAAGGAACAATCA-AGGTTNTCNCTAATTGCTTGCCCNAAAAAAAAAAAAA 261
consensus_13387#2      TTCGCCGA-CATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGA 271
consensus_13387#1      GTACTTGAACATGAGAAAATTCATCAGGTGCAAAGTTAGANCACTTGCTATGAACAAAAA 1098
                             **  * *    *            *                      *  *  *

consensus_13387#0      AAAAAAAA------------------------ 1529
consensus_13387#3      AAAAAAAAAA---------------------- 271
consensus_13387#2      CGCCACGCTGG--------------------- 282
consensus_13387#1      GCTACTACTAGTATTTTGCTGTGCTTCAAAAA 1130