cluster # 13394

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Oryza sativa
cluster # 13394 cluster # 13394 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13394#0 length = 2187 sequences # 12

consensus_13394#1 length = 455 sequences # 1

consensusID : consensus_13394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 2187
fasta sequence

                              [AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCGAGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGCCCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGCGGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA----GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAAC-CAATTCATGCTCACACAGATCTATCTACAATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATATCTGTAGTCACGGAGAAACATCAAAAATTAAAGGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGGATTTGCATTAATGTAGGTTCAGGTTCAT]

[+] EMBL AK099681             [AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCGAGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGCCCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGCGGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAATGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA    GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGAAGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGCGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAAC CAATTCATGCTCACACAGATCTATCTACAATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTACTATG                                                                                                             ]
[+] EMBL CB643657             [                                                                 AGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGCCCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGCGGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGAGGGTGGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB656871             [                                                                                                                                                                                                    ATCGCGCTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA    GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AJ582955             [                                                                                                                                                                                                                         GACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACTCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA    GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCCCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB646605             [                                                                                                                                                                                                                                  AAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA    GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF303361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCTAATTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB669685             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTGCAACCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGCTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB656872             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTAGTTGCCATCGTAATCATGATGGCAAAGTGNATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB096241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAAGTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTCATCAACATCAATATGAATGTGGGGAATGCTAGAATGACTTACGTTGTGAAAAAGAGGGAGTAGCAAC CAATTCATGCTCACACAGATCTATNCACAATC AAAGCNCATCCTTGGTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACGGGCCANAGGTTTTGTTTT                                                                                                                                                                                                ]
[-] EMBL CB643658             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGGAAAGGTATTCCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAATGTCAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTGTAGATTTATCAACATCAATATGAATGTGGGAAATGTTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAACGCAATTCATGCTCACACAGATCTATTTACAATCAAAAGCACAGCCTTGTTAGGCATTGTGATACATCGATTGTAAATTTTCATGGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTAAAGGGTTATATCTGTAGTCACGGAGAAACATCAAAAATTAAAG                                                                       ]
[-] EMBL CF325655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAA                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB669686             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAAC CAATTCATGCTCACACAGATCTATCTACAATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATAACTGTAGTCACGGAGAAACATCAAAAAACGTTTGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGGATTTGCATTAATGTAGGTTCAGGTTCAT]




>consensus_13394#0
AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCG
AGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGC
CCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGC
GGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGC
GGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAA
GGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGT
GGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGG
CGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGA
TTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGC
TACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATC
TCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGAGGGAGAGGTTACAAAATTGTGAT
GACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATAT
AATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTG
TGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAAT
TGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTT
GAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGA
AAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACAT
TCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCC
TTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTT
GAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGT
TCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAG
GACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCA
CTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCA
ATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGT
TCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATA
CAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGA
TGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTT
TGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACA
ATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCT
CCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTA
GATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGA
CTTACATTGTGAAAAAGAGGGAGTAGCAACCAATTCATGCTCACACAGATCTATCTACAA
TCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGC
CAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACA
ATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATATCTGTAGTCACGGAGAA
ACATCAAAAATTAAAGGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGGA
TTTGCATTAATGTAGGTTCAGGTTCAT

consensusID : consensus_13394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [GATCTTGACAAATCTANTCCATGTTGCAAAGCTTGAAGTGATTTGTGTATAACTATGCTCTAGACATTTTCTNTTCTTGCGCTTTCTCTAGTTGAAAATATACAATGTGTANTTTCTGCTGTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCCCCGTTTCATAATGTNATTCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATGACTTACNTTGTGAAAAANAAGGNNTNCACCCNTTCCNGCTCCCNCAATNTATCTACNATCAAAAGCCANCCNTGTTAAGCATTGANATACATCCATTGTAAATTTCCANCGACANGGCANATGTTTTGTTTTTCTCACTTTCTTGGGTNACAGTCANCAANGGATTGACTTGG]

[+] EMBL BE228504             [GATCTTGACAAATCTANTCCATGTTGCAAAGCTTGAAGTGATTTGTGTATAACTATGCTCTAGACATTTTCTNTTCTTGCGCTTTCTCTAGTTGAAAATATACAATGTGTANTTTCTGCTGTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCCCCGTTTCATAATGTNATTCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATGACTTACNTTGTGAAAAANAAGGNNTNCACCCNTTCCNGCTCCCNCAATNTATCTACNATCAAAAGCCANCCNTGTTAAGCATTGANATACATCCATTGTAAATTTCCANCGACANGGCANATGTTTTGTTTTTCTCACTTTCTTGGGTNACAGTCANCAANGGATTGACTTGG]




>consensus_13394#1
GATCTTGACAAATCTANTCCATGTTGCAAAGCTTGAAGTGATTTGTGTATAACTATGCTC
TAGACATTTTCTNTTCTTGCGCTTTCTCTAGTTGAAAATATACAATGTGTANTTTCTGCT
GTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCCCCGTTTCATAATGTNAT
TCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCT
AGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATGACTTACNTTGTGAAAAAN
AAGGNNTNCACCCNTTCCNGCTCCCNCAATNTATCTACNATCAAAAGCCANCCNTGTTAA
GCATTGANATACATCCATTGTAAATTTCCANCGACANGGCANATGTTTTGTTTTTCTCAC
TTTCTTGGGTNACAGTCANCAANGGATTGACTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13394#0      AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCG 60
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      AGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGC 120
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      CCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGC 180
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGC 240
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAA 300
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGT 360
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGG 420
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      CGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGA 480
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGC 540
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATC 600
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGAGGGAGAGGTTACAAAATTGTGAT 660
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATAT 720
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      AATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTG 780
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAAT 840
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTT 900
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGA 960
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      AAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACAT 1020
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCC 1080
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTT 1140
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGT 1200
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAG 1260
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      GACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCA 1320
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      CTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCA 1380
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      ATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGT 1440
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATA 1500
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      CAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGA 1560
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      TGACGCAGATCTTGACAAATACATTAAAGATCATCCATGT-GCAAAGCTTGAAGTGATTT 1619
consensus_13394#1      -------GATCTTGACAAATCTANT---------CCATGTTGCAAAGCTTGAAGTGATTT 44
                              *************  * *         ****** *******************

consensus_13394#0      TTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATAC 1679
consensus_13394#1      GTGTATAACTATGCTCTAGACATTTTCTNTTCTTGCGC-TTTCTCTAGTTGAAAATATAC 103
                        *************************** ********* *********************

consensus_13394#0      AATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCC 1739
consensus_13394#1      AATGTGTANTTTCTGCTGTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCC 163
                       ******** ********************* ******* *********************

consensus_13394#0      TCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCT 1799
consensus_13394#1      -CCGTTTCATAATGTNATTCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCT 222
                        ************** ******** ***********************************

consensus_13394#0      AGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATG 1859
consensus_13394#1      AGATAGATATATATGTCTAGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATG 282
                       *************************** ***** ******************* * ****

consensus_13394#0      ACTTACATTGTGAAAAAGAGGGAGTAGCAACCAATTCATGCTCACACAGATCTATCTACA 1919
consensus_13394#1      ACTTACNTTGTGAAAAANAAGGNNTNC--ACCCNTTCCNGCTCCCNCA-ATNTATCTACN 339
                       ****** ********** * **  *    ***  ***  **** * ** ** ******* 

consensus_13394#0      ATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGG 1979
consensus_13394#1      ATCAAAAGC-CANCCNTGTTAAGCATTGANATACATCCATTGTAAATTTCCANCGACANG 398
                       ********* ** ** ***** ******* ******* *********** ** ***** *

consensus_13394#0      CCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGAC 2039
consensus_13394#1      GCANATGTTTTGTTTTTCTCACTTTCTTGGGTNACAGTCANCAANGGATTGACTTGG--- 455
                        ** ********************* ****** ******* *** ************   

consensus_13394#0      AATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATATCTGTAGTCACGGAGA 2099
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      AACATCAAAAATTAAAGGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGG 2159
consensus_13394#1      ------------------------------------------------------------
                                                                                   

consensus_13394#0      ATTTGCATTAATGTAGGTTCAGGTTCAT 2187
consensus_13394#1      ----------------------------