These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2187 fasta sequence [AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCGAGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGCCCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGCGGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA----GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAAC-CAATTCATGCTCACACAGATCTATCTACAATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATATCTGTAGTCACGGAGAAACATCAAAAATTAAAGGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGGATTTGCATTAATGTAGGTTCAGGTTCAT] [+] EMBL AK099681 [AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCGAGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGCCCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGCGGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAATGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGAAGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGCGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAAC CAATTCATGCTCACACAGATCTATCTACAATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTACTATG ] [+] EMBL CB643657 [ AGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGCCCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGCGGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGAGGGTGGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAA ] [+] EMBL CB656871 [ ATCGCGCTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGA ] [+] EMBL AJ582955 [ GACATGGCGAAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACTCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCCCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGAT ] [+] EMBL CB646605 [ AAGAACGCCGCCGCGGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAAGGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGTGGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGGCGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGATTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGCTACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATCTCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGA GGGAGAGGTTACAAAATTGTGATGACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATATAATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGA ] [+] EMBL CF303361 [ AAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTGTGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCTAATTTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGG ] [+] EMBL CB669685 [ TTTGCAACCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAATTGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGCTGATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACAT ] [-] EMBL CB656872 [ GTAGTTGCCATCGTAATCATGATGGCAAAGTGNATAAAGTGGAAACTTTGAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGAAAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACATTCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCCTTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTTGAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTG ] [+] EMBL CB096241 [ ATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGTTCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAGGACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAAGTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTCATCAACATCAATATGAATGTGGGGAATGCTAGAATGACTTACGTTGTGAAAAAGAGGGAGTAGCAAC CAATTCATGCTCACACAGATCTATNCACAATC AAAGCNCATCCTTGGTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACGGGCCANAGGTTTTGTTTT ] [-] EMBL CB643658 [ AGGAAAGGTATTCCACTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCAATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAATGTCAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTGTAGATTTATCAACATCAATATGAATGTGGGAAATGTTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAACGCAATTCATGCTCACACAGATCTATTTACAATCAAAAGCACAGCCTTGTTAGGCATTGTGATACATCGATTGTAAATTTTCATGGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTAAAGGGTTATATCTGTAGTCACGGAGAAACATCAAAAATTAAAG ] [-] EMBL CF325655 [ ATCATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAA ] [-] EMBL CB669686 [ CATGTTCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATACAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGATGACGCAGATCTTGACAAATACATTAAAGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAAAAGAGGGAGTAGCAAC CAATTCATGCTCACACAGATCTATCTACAATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATAACTGTAGTCACGGAGAAACATCAAAAAACGTTTGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGGATTTGCATTAATGTAGGTTCAGGTTCAT] consensusID : consensus_13394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [GATCTTGACAAATCTANTCCATGTTGCAAAGCTTGAAGTGATTTGTGTATAACTATGCTCTAGACATTTTCTNTTCTTGCGCTTTCTCTAGTTGAAAATATACAATGTGTANTTTCTGCTGTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCCCCGTTTCATAATGTNATTCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATGACTTACNTTGTGAAAAANAAGGNNTNCACCCNTTCCNGCTCCCNCAATNTATCTACNATCAAAAGCCANCCNTGTTAAGCATTGANATACATCCATTGTAAATTTCCANCGACANGGCANATGTTTTGTTTTTCTCACTTTCTTGGGTNACAGTCANCAANGGATTGACTTGG] [+] EMBL BE228504 [GATCTTGACAAATCTANTCCATGTTGCAAAGCTTGAAGTGATTTGTGTATAACTATGCTCTAGACATTTTCTNTTCTTGCGCTTTCTCTAGTTGAAAATATACAATGTGTANTTTCTGCTGTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCCCCGTTTCATAATGTNATTCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATGACTTACNTTGTGAAAAANAAGGNNTNCACCCNTTCCNGCTCCCNCAATNTATCTACNATCAAAAGCCANCCNTGTTAAGCATTGANATACATCCATTGTAAATTTCCANCGACANGGCANATGTTTTGTTTTTCTCACTTTCTTGGGTNACAGTCANCAANGGATTGACTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13394#0 AGGTCGTCTAACGACTCCGCCCCTCACCCACCACCCCACCCATCGCCTCCGCCACCGGCG 60 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 AGAGGAGGCGGAGCTGCGCGTGGCGATGAAGGGGTCCCACTCGCAGTCGCAGGCCCAGGC 120 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 CCAGTCCCAGGCGGGCCGGCGGCGGCGGTGCGGGTGGCTGCTGCCGCTCCTCGTCGGCGC 180 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GGCCTTCCTCGCCGAGATCGCGTTCCTCGGCCGCCTCGACATGGCGAAGAACGCCGCCGC 240 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GGTCGAGAGCTGGACCACCTCCTTCTACGCCCGCTCCTCCGCCCCCGCCCGCGACGGGAA 300 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GGCAGCGGTCGTGGTCCCCGGCGCGGACGCGGACGACGCGCCCCCGGGCGGAGGTGAGGT 360 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GGTGGAGGAGGACGACGGCGACATCCGGTTGTGCGAGGAGCGGCTTGAGAGGGAGGACGG 420 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 CGTGCCGCACGACCGCGACTTCGACAAGGATCCCGTCCTCGTCGGGGGCGCCGCTAAGGA 480 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TTGGAATAAATGTTCTGTAGGATGTGAATTTGGGTTTTCAGCTACTAAGACGCCTGATGC 540 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TACTTTTGGAATTGCCCCAGATCCTACTGTAGAGAGTATCCTCAGATCGATGGAGTCATC 600 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TCAGTATTATTCAGAGAACAACATTGCTGTGGCTCGAGGGAGAGGTTACAAAATTGTGAT 660 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GACAACAAGCCTTTCCTCAGATGTACCTGTTGGCTACTTTTCATGGGCTGAATATGATAT 720 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 AATGGCACCTGTGCCTCCAAAAACTGAAGAAGCCCTAGCTGCAGCATTTATTTCAAACTG 780 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TGGTGCACGTAATTTTCGTTTGCAAGCCCTTGAGATGCTTGAGAGCTTAGATGTCAAAAT 840 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TGATTCATATGGTAGTTGCCATCGTAATCATGATGGCAAAGTTGATAAAGTGGAAACTTT 900 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GAAGCGCTACAAATTTAGCTTGGCCTTTGAGAATTCCAACGAGGAAGATTATGTTACAGA 960 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 AAAGTTTTTTCAATCGCTGGTAACAGGAGCTATTCCAGTTGTGATTGGTGCTCCAAACAT 1020 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TCAAGAGTTCTCTCCTGGAGAAGGCGCAATATTACACATTAAAGAGCTTGATGATGTTCC 1080 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TTCAATTGCCAAGACAATGAAACATATTGCATCAAATCAGGAAGCCTTTAATCAATCTTT 1140 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GAGATGGAAGTATGATGGCCCATCTGATTCTTTCAAGGCCCTTATTGACATGGCAGCGGT 1200 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TCATTCATCATGTCGTCTTTGCATACATGTCGCGACGAAGATTCATGAGAAAGAGGAAAG 1260 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 GACACCAAAATTTATGAATCGCCCATGTAGTTGTTCAAGCAAAAGAGGAAAGGTATACCA 1320 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 CTTGTTTGTCAGAGAAAGAGGGCGGTTCAAGACAGAGAGCATTTTTCTGAGGTCGGACCA 1380 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 ATTAACTATGGGTGCTTTGGAGTCTGCTGTGCTTGCTAAATTTAGATCGCTCAATCATGT 1440 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TCCTGTGTGGAAGGATGAAAGACCACCAAGTATTAGAGGTGGGGACGAGTTGAAGGTATA 1500 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 CAAAATTTATCCAATCGGCCTTACACAACGACAGGCATTATACCAGTTCAGATTTAGAGA 1560 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 TGACGCAGATCTTGACAAATACATTAAAGATCATCCATGT-GCAAAGCTTGAAGTGATTT 1619 consensus_13394#1 -------GATCTTGACAAATCTANT---------CCATGTTGCAAAGCTTGAAGTGATTT 44 ************* * * ****** ******************* consensus_13394#0 TTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAGTTGAAAATATAC 1679 consensus_13394#1 GTGTATAACTATGCTCTAGACATTTTCTNTTCTTGCGC-TTTCTCTAGTTGAAAATATAC 103 *************************** ********* ********************* consensus_13394#0 AATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCC 1739 consensus_13394#1 AATGTGTANTTTCTGCTGTACGGTAAGCTANTCTGCTAATATGTCTTATGTAGTACTTCC 163 ******** ********************* ******* ********************* consensus_13394#0 TCCGTTTCATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCT 1799 consensus_13394#1 -CCGTTTCATAATGTNATTCATTCNTGCATTTCTCACATTCATATTGATTTAATGAATCT 222 ************** ******** *********************************** consensus_13394#0 AGATAGATATATATGTCTAGATTTATCAACATCAATATGAATGTGGGAAATGCTAGAATG 1859 consensus_13394#1 AGATAGATATATATGTCTAGATTTATCCACATCNATATGAATGTGGGAAATGCCANAATG 282 *************************** ***** ******************* * **** consensus_13394#0 ACTTACATTGTGAAAAAGAGGGAGTAGCAACCAATTCATGCTCACACAGATCTATCTACA 1919 consensus_13394#1 ACTTACNTTGTGAAAAANAAGGNNTNC--ACCCNTTCCNGCTCCCNCA-ATNTATCTACN 339 ****** ********** * ** * *** *** **** * ** ** ******* consensus_13394#0 ATCAAAAGCACAGCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGG 1979 consensus_13394#1 ATCAAAAGC-CANCCNTGTTAAGCATTGANATACATCCATTGTAAATTTCCANCGACANG 398 ********* ** ** ***** ******* ******* *********** ** ***** * consensus_13394#0 CCAGATGTTTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGAC 2039 consensus_13394#1 GCANATGTTTTGTTTTTCTCACTTTCTTGGGTNACAGTCANCAANGGATTGACTTGG--- 455 ** ********************* ****** ******* *** ************ consensus_13394#0 AATGAACGATATTGCTGTGATATAATGTAATGTACTATGTTATATCTGTAGTCACGGAGA 2099 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 AACATCAAAAATTAAAGGCAGAACAACTGAAGTACCACCTTTGTAATGACATAAGGGGGG 2159 consensus_13394#1 ------------------------------------------------------------ consensus_13394#0 ATTTGCATTAATGTAGGTTCAGGTTCAT 2187 consensus_13394#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||