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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2067 fasta sequence
[CTCCTAACAAGCGAACAAAAGCTTCACTGCCCCCTTGTCTGCAATGGCGTCTCGAGCTTTCCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGGCGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGCAGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAGTTCTCCCCGCCTGCGGCTCCGGTGAAGGTCCCTCCTCCGCCTCCGGTGCAGGTGCCCCCGCCGCAGTACGAGAAGGCCTCCGCGGGGGGCAAGCACGACGGATCGGCGTTTGGTTTCTTCTGGGACGCCGTCGCGCGCGTGCAGGAAGCCCACGCGAGCCTCGACGAGTACGTGGCGAACTGGTTTGGGCTGGATCAATCCAAGTACCAATGGGCTCTCAACGACTACTACGAGAGCACCGGCAAGGTTCGTTCTCCCTGATTTCTCTTACGCGATTTTGCTGCTTTTGCATGTAATTTCGGGGAATCGGATTCGATCCATGTCGTGTAGGTTGCTTCGTGTGCATGTTTATTCTTTACTGGATCTGCGCCCGTAATGAGAATCTGGGATAGAATTTGCTCGGTAATTTTCAGTATGAAATTGAGCAAACGTTTCTGTTTGGTTGGTGGGATGCACTTATGGTGGATGCTGCTGTAGTTTATCCTGGTGAAGTCTACTACTTGATGGTGAACATGGAGCTGTCCTTCTGACCATGTCCTTTAGATCATAAAAGTGTTGATCTGTGCGTTCTGAGTGTGATAGATGCTCGTAGGTGTGTCTTATGTGGTAGGTACTATTTGGGCCCGAAAGGCATTTGTGTTGTGGGGAATATATGCAAAGGGTTTTAGATTGAGTGTGTGCAGCAAAATTCAATTCGGCCTAACATCTGTAAAGGTGGATTCAAGCATAGGCCTGAAACACAAGGCAAGGATAGATACCTAATCGCCCTTTTTAGCATCTATACAAATGATCGAGAGTTATCACTTGGTAGAAAATGTGCAGTAGGCTTATCATATTGTATAGAGAGATGCTCTTGGAAGCTTTTTCAAAGTTGTTCCATGATTCTACCTTTGAGTGTACCTGCTGTTTGTATTAATTATTTCCGCTCAGCACACTTAATGACACTTATGATGATTTGTAAATTGCAACAATCATGATTGACAAGAGGGTGAAATGACAAATTTGTCCCTGCTGATATTTGCGTCCTTCGTATCAGTGGCAAATGCCCCTGGGACTGGTGTCACTGTAAACCTTTTGACCGTTCTGTTATTAAACGCTCCTAGAAGAACTGTCAACAGGGTATTTAGAAGTGTGATGTGGAGTTAGATATGAATAGTTCATATGATAAGTATGTTCAGGATGGCTTTACTAGGTAGGATTGTATGGAAGAAACAGTTCTGATTTCTTTACGTAATGGGACATAATTCCATTGCTTGGAGTGACTAAATCACATTAAGTGATTGGCAAACTGGCAAACATCTGATATTTAATAGACTAGCTCACTCCATTTTAACTGATTTTATCTTAGGGGCCATAGAATACCTATGCCACCTTTGCATTTATGTACATTTATAAATACTTGTTTTACAACCTATCCTTTTTACACACTTGCACATTTGTAGAGAATGTTGGTGATTCCTTACAGATGTACAATTGCATTTGGTTATGTTCTAGGGAATGCCTGTTTTGTTTTAGGAGTGCCATCCCAAACAGACAATGTAGCAAGTTGGCGGAATCGTTGGTTATTTTTCAATGATTTTTGTTACCACATGGACAATGTTTTATGAATGTTTTTTGTTCTAACTATTCTGCTTTGTTCGAACTTCGAAGTAACATTGTCATAAGA]
[+] EMBL C74927 [CTCCTAACAAGCGAACAAAAGCTTCACTGCCCCCTTGTCTGCAATGGCGTCTCGAGCTTTCCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGNCGCCGATGATCGGGAGGGNCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGG ]
[+] EMBL AK119466 [ ACTGCCCCCTTGTCTGCAATGGCGTCTCGAGCTTTCCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGGCGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGCAGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAGTTCTCCCCGCCTGCGGCTCCGGTGAAGGTCCCTCCTCCGCCTCCGGTGCAGGTGCCCCCGCCGCAGTACGAGAAGGCCTCCGCGGGGGGCAAGCACGACGGATCGGCGTTTGGTTTCTTCTGGGACGCCGTCGCGCGCGTGCAGGAAGCCCACGCGAGCCTCGACGAGTACGTGGCGAACTGGTTTGGGCTGGATCAATCCAAGTACCAATGGGCTCTCAACGACTACTACGAGAGCACCGGCAAGGTTCGTTCTCCCTGATTTCTCTTACGCGATTTTGCTGCTTTTGCATGTAATTTCGGGGAATCGGATTCGATCCATGTCGTGTAGGTTGCTTCGTGTGCATGTTTATTCTTTACTGGATCTGCGCCCGTAATGAGAATCTGGGATAGAATTTGCTCGGTAATTTTCAGTATGAAATTGAGCAAACGTTTCTGTTTGGTTGGTGGGATGCACTTATGGTGGATGCTGCTGTAGTTTATCCTGGTGAAGTCTACTACTTGATGGTGAACATGGAGCTGTCCTTCTGACCATGTCCTTTAGATCATAAAAGTGTTGATCTGTGCGTTCTGAGTGTGATAGATGCTCGTAGGTGTGTCTTATGTGGTAGGTACTATTTGGGCCCGAAAGGCATTTGTGTTGTGGGGAATATATGCAAAGGGTTTTAGATTGAGTGTGTGCAGCAAAATTCAATTCGGCCTAACATCTGTAAAGGTGGATTCAAGCATAGGCCTGAAACACAAGGCAAGGATAGATACCTAATCGCCCTTTTTAGCATCTATACAAATGATCGAGAGTTATCACTTGGTAGAAAATGTGCAGTAGGCTTATCATATTGTATAGAGAGATGCTCTTGGAAGCTTTTTCAAAGTTGTTCCATGATTCTACCTTTGAGTGTACCTGCTGTTTGTATTAATTATTTCCGCTCAGCACACTTAATGACACTTATGATGATTTGTAAATTGCAACAATCATGATTGACAAGAGGGTGAAATGACAAATTTGTCCCTGCTGATATTTGCGTCCTTCGTATCAGTGGCAAATGCCCCTGGGACTGGTGTCACTGTAAACCTTTTGACCGTTCTGTTATTAAACGCTCCTAGAAGAACTGTCAACAGGGTATTTAGAAGTGTGATGTGGAGTTAGATATGAATAGTTCATATGATAAGTATGTTCAGGATGGCTTTACTAGGTAGGATTGTATGGAAGAAACAGTTCTGATTTCTTTACGTAATGGGACATAATTCCATTGCTTGGAGTGACTAAATCACATTAAGTGATTGGCAAACTGGCAAACATCTGATATTTAATAGACTAGCTCACTCCATTTTAACTGATTTTATCTTAGGGGCCATAGAATACCTATGCCACCTTTGCATTTATGTACATTTATAAATACTTGTTTTACAACCTATCCTTTTTACACACTTGCACATTTGTAGAGAATGTTGGTGATTCCTTACAGATGTACAATTGCATTTGGTTATGTTCTAGGGAATGCCTGTTTTGTTTTAGGAGTGCCATCCCAAACAGACAATGTAGCAAGTTGGCGGAATCGTTGGTTATTTTTCAATGATTTTTGTTACCACATGGACAATGTTTTATGAATGTTTTTTGTTCTAACTATTCTGCTTTGTTCGAACTTCGAAGTAACATTGTCATAAGA]
[+] EMBL C72155 [ GCCCCCTTGTCTGCAATGGCGTCTCGAGCTTTCCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGNCGTCGACGG GAGCACG CGCGCTCCTCGCGACCGTCCGAGTCCCCTCGGTCGGGTTTCTCGACCCCGGCGACGGACCCGCGCACGGNCG CTCGACGTCGACGACGTCTTCGGTTCCTTNGCCGAAGAAGNAGAGGGTGG ]
consensusID : consensus_13398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1018 fasta sequence
[CTTTCCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGGCGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGCAGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAG-TTCTCCCCGCCTGCGGCTCC-GGTGAAGGTCCC-TCCT-CCGCC-TCCGGTGC--AGG-TGCCCCCGCCGCAGTACGAG-AAGGCC-TCCGCGGGGGG-CAAGCAC-GACGGATCGGCGTTTGGTTTC-TTCTGGGACGCCGTCGCGC-GCG-TGCAGGAAGCCCACGCGAGCCTCGACGA-GTACGTGGCGAACTGGTTTGGGCTGGAT-CAATCCAAGTACCA-ATGGGCGCTCAACGACTACTACGAGAGCACCGGCA-AGGAAGTGGAGTGTGGCAAAGCTGGCA-AGCCA-AAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA-GCAGTTCTTTTCTGGAATTACG-CTGAGGAGCA-TTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTG-CATG-GAGTCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC-CTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCGCAATGCCTAATAGTG---TTTTTTTTTTTGCCTTCCGGAAAAAAAACAAATTGCATATTCTTCTGAGCTCTTTAAAAA]
[+] EMBL AK072619 [CTTTCCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGGCGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGCAGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAG TTCTCCCCGCCTGCGGCTCC GGTGAAGGTCCC TCCT CCGCC TCCGGTGC AGG TGCCCCCGCCGCAGTACGAG AAGGCC TCCGCGGGGGG CAAGCAC GACGGATCGGCGTTTGGTTTC TTCTGGGACGCCGTCGCGC GCG TGCAGGAAGCCCACGCGAGCCTCGACGA GTACGTGGCGAACTGGTTTGGGCTGGAT CAATCCAAGTACCA ATGGGCTCTCAACGACTACTACGAGAGCACCGGCA AGGAAGTGGAGTGTGGCAAAGCTGGCA AGCCA AAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA GCAGTTCTTTTCTGGAATTACG CTGAGGAGCA TTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTG CATG GAGTCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC CTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATT ]
[+] EMBL AK104969 [ CCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGGCGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGGCGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGCAGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAG TTCTCCCCGCCTGCGGCTCC GGTGAAGGTCCC TCCT CCGCC TCCGGTGC AGG TGCCCCCGCCGCAGTACGAG AAGGCC TCCGCGGGGGG CAAGCAC GACGGATCGGCGTTTGGTTTC TTCTGGGACGCCGTCGCGC GCG TGCAGGAAGCCCACGCGAGCCTCGACGA GTACGTGGCGAACTGGTTTGGGCTGGAT CAATCCAAGTACCA ATGGGCTCTCAACGACTACTACGAGAGCACCGGCA AGGAAGTGGAGTGTGGCAAAGCTGGCA AGCCA AAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA GCAGTTCTTTTCTGGAATTACG CTGAGGAGCA TTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTG CATG GAGTCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC CTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCGCAATGCCTAATAGTGTT TTTTTTTTTTTGCCTTCCG ]
[+] EMBL C27446 [ TGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACCCTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGCCGCCGCCGATGAT GAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGG GAGCACG CGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGGCGACGGCCCCG ]
[+] EMBL BE040665 [ GGTCGGGCTTCTCGACCCCGGCGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGCATCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAG TTCTCCCCGCCTGCGGCTTC GGTGAAGGTCCC TCCT CCGCC TCCGGTGC AGG TGCCCCCGCCGCAGTACGAG AAGGCC TCCGCGGGGGG CAAGCAC GACGGATCGGCGTTTGGTTTC TTCTGGGACGCCGTCGCGC GCG TGCAGGAAGCCCACGCGAGCCTCGACGA GTACGTGGCGAACTGGTTTGGGCTGGAT CAATCCAAGTACCA ATGGGCGCTCAACGACTACTACGAGAGCACCGGCA AGGAAGTGGAGTGTGGCAAAGCTGGCA AGCCA AAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA GCAGTTCTTTTCTGGAATTACG CTGAGGAGCA TTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGGTAGATCCTGGGGGCCGAAAGGGGGGTGTCTGGTTTTCAACTG CATG GAGTCTCTTGGGAGGGTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAAGCGTTTTGGTCACTCAGTGCCAGGATCTCTATTG GATCCCATAGTATGACAAAAATGGATATTCCCAAGGCCTAAAGGGG GTTTTGTTTTTGCCTTCCGGAAAAAAAA ]
[+] EMBL BI806591 [ TGTAGTTTTTCCCCGCCT CGGTTCCTGTTGAAGGTCCCTTCCTCCCGCCTTCCGGTTCCAAGGTTCCCCCCCCCGCAGTACGAGTAAGGCCTTCCCCGGGGGGCCAAGCACTGACGGATCGGCGTTTGGTTTCTTTCT GGAC CCGTCGCGCGGCGTTGCAGGAAGCCCACGCGAGCCTCGACGATGTACGTGGCGAACTGGTTT GGCTGGATCCAATCCAAGTACCACATGGGCGCTCAACGACTACTACGAGAGCACCGGCA AGGAAGTGGAGTGT GCCAAGCTGGCA AGCCACAAGGAGCTTACTACTAGCCAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA GCAGTTCTTTTCTGGAATTACGCCTGAGGA CACTTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTGCCATGNGAGTCTCTT GCAGGTTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC CTGCCAGGATCTCTATTGTAATCCTATGTTATGAC AAATTGCATATTCGC ATGCCTAATAGTG TTTTTTTTTTT CCTTCAAAAAAAAAA ]
[+] EMBL BI807862 [ CGTCGCGC GCG TGCAGGAAGCCCACGCGAGCCTCGACGA GTACGTGGCGAACTGGTTTGGGCTGGAT CCATCCCAGTACCC ATGGGCGCTCAACGACTACTACGAGAGCACCGGCACAGGAAGTGGAGTGTGGCCAAGCTGGCACAGCCC AAGGAGCTTACTACTAGCCAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCACCCAGTTCTTTTCTGGAATTAC CTGAGGAGCACTTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCCAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTG CATG GAGTCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC CTGCCAGGATCTCTATTGTAATCCTATGTTATGAC AAATTGCATATTCGC ATGCCTAATAGTG TTTTTTTaaaaaaaa ]
[+] EMBL AF140492 [ CGCTCAACGACTACTACGAGAGCACCGGCA AGGAAGTGGAGTGTGGCAAAGCTGGCA AGCCA AAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA GCAGTTCTTTTCTGGAATTACG CTGAGGAGCA TTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTG CATG GAGTCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC CTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCGCAATGCCTAATAGTG TTTTTTTTTTT ]
[+] EMBL AU082938 [ TGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCA GCAGTTCTTTTCTGGAATTACG CTGAGGAGCA TTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTG CATG GAGTCTCTTGGCAGGTTTAC GGNTGCGCTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTC CTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCGCAATGCCTAATAGTGTTTTTTTTTTTTTTGCCTTCCGTGAAATATGCAAATTGCATATTCTTCTGAGCTCTTTAAAAA]
consensusID : consensus_13398#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[TTGCGTGCTTCCACAAGGGGGCCACCCCCCGTGTCCGTGTNTTTCCCCCTGGTCCGTGTAGTCCTCTTCGCTCCGTCAGTGCCCCCCCCCAGTTCGTGNAGCTTCCCGGGGGGCAAGCACGACGGATCGCTTTGGTTTCTTCTGGGACCCTCGCGCGCGTGCAGGAAGCCCACGCGAGCCTCGACCGAGTACGTGGCGAACTGGTTTGGGCTGGATCAATCCCAAGTACCAATGGGCGCTCAACGACTACTACGAGAGCACCGGCAAGGAAGTGGAGTGTGGCAAAGCCTGGCAANCCAAAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCAGCAGTTCTTTTCTGGAATTACGCTGAGGAGCATTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGNCTGGTTGTCTGTTTTTCCCCGCATGGAGTCTCTTGGCAGGTTTACGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCTTTTGTTCACTCCTGCCAGGATCTCTATGTAATCCTATGTTATGACAAAATTGCATATTCCCATGCCTAATAGTGTTTTTTTTCCCCCCCGTGAAAAA]
[+] EMBL BM037866 [TTGCGTGCTTCCACAAGGGGGCCACCCCCCGTGTCCGTGTNTTTCCCCCTGGTCCGTGTAGTCCTCTTCGCTCCGTCAGTGCCCCCCCCCAGTTCGTGNAGCTTCCCGGGGGGCAAGCACGACGGATCGCTTTGGTTTCTTCTGGGACCCTCGCGCGCGTGCAGGAAGCCCACGCGAGCCTCGACCGAGTACGTGGCGAACTGGTTTGGGCTGGATCAATCCCAAGTACCAATGGGCGCTCAACGACTACTACGAGAGCACCGGCAAGGAAGTGGAGTGTGGCAAAGCCTGGCAANCCAAAGGAGCTTACTACTAGCAAAGTGCAGAAAGTTTAGAAGGTCTGTTCACATGATAAAACCAGCAGTTCTTTTCTGGAATTACGCTGAGGAGCATTTTGCAGCGACTTCTTTCTGGGTTGAATGTGTAGCTAAGCAAATGTGTGGAGAAGTTCGATTTGTTAGATCTTGGGGGCGTAAAGNCTGGTTGTCTGTTTTTCCCCGCATGGAGTCTCTTGGCAGGTTTACGGCTGCGCTGGAAGGGAATTGAGACTGCTAGGCTTTTGTTCACTCCTGCCAGGATCTCTATGTAATCCTATGTTATGACAAAATTGCATATTCCCATGCCTAATAGTGTTTTTTTTCCCCCCCGTGAAAAA]
consensusID : consensus_13398#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence
[AANTGTGTGGAGAAGTTCGATTTGTTANATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTGCATGGAGTNTCTTGGCAGGTTTAACGGGTGCGNTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTCCTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCGCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU108919 [AANTGTGTGGAGAAGTTCGATTTGTTANATCTTGGGGGCGTAAAGGTGGTTGTCTGTTTTTCAACTGCATGGAGTNTCTTGGCAGGTTTAACGGGTGCGNTGGAAGGGAATTGAGACTGCTAGGCGTTTTGTTCACTCCTGCCAGGATCTCTATTGTAATCCTATGTTATGACAAAATTGCATATTCGCAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 --------------------------------------------------------CTTT 4
consensus_13398#0 CTCCTAACAAGCGAACAAAAGCTTCACTGCCCCCTTGTCTGCAATGGCGTCTCGAGCTTT 60
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACC 64
consensus_13398#0 CCCACGAGCTCCCCGCCGCTGCTGCTCGCCCTAGGGGCCCCGACGCTCCAGCGGTAAACC 120
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGC 124
consensus_13398#0 CTACCTCCTCCTCCTCCTCCGTCGCCGGGATGGGGTCCACCTCCTCGCCGTCCCCGCCGC 180
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGG 184
consensus_13398#0 CGCCGCCGATGATCGGGAGGGCCGGGAACCTCACCGTCTTCATCACGCCGCCGTCGCCGG 240
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGG 244
consensus_13398#0 CGAGCACGCCGCGCTCCTCGCGCCCGTCCGAGTCCCCTCGGTCGGGCTTCTCGACCCCGG 300
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGC 304
consensus_13398#0 CGACGGCCCCGCGCACGGCCGCCTCGCCGTCGCCGCCGTCTCCGGCTCCCTCGCCGCAGC 360
consensus_13398#2 -----------------TTGCGTGCTTCCACAAGGGGGCCACCCCCCGTGTCCGTGTNTT 43
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 AGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAGTTCTCCCCGCCTGCGGCTC 364
consensus_13398#0 AGCAGAGGGTGGCCAGCCCGCCGCCCACGATCCCGGTGAAGTTCTCCCCGCCTGCGGCTC 420
consensus_13398#2 TCCCCCTGGTCCGTGTAGTCCTCTTCGCTCCGTCAGTGCCCCCCCCCAGTTCGTGNAGCT 103
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CGGTGAAGGTCCCTCCTCCGCCTCCGGTGCAGGTGCCCCCGCCGCAGTACGAGAAGGCCT 424
consensus_13398#0 CGGTGAAGGTCCCTCCTCCGCCTCCGGTGCAGGTGCCCCCGCCGCAGTACGAGAAGGCCT 480
consensus_13398#2 TCCCGGGGGGCAAGCACGACGGATCGC--TTTGGTTTCTTCTGGGACCC--TCGCGCGCG 159
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 CCGCGGGGGGCAAGCACGACGGATCGGCGTTTGGTTTCTTCTGGGACGCCGTCGCGCGCG 484
consensus_13398#0 CCGCGGGGGGCAAGCACGACGGATCGGCGTTTGGTTTCTTCTGGGACGCCGTCGCGCGCG 540
consensus_13398#2 TGCAGGAAGCCCACGCGAGCCTCGACCGAGTACGTGGCGAACTGGTTTGGGCTGGATCAA 219
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 TGCAGGAAGCCCACGCGAGCCTCGAC-GAGTACGTGGCGAACTGGTTTGGGCTGGATCAA 543
consensus_13398#0 TGCAGGAAGCCCACGCGAGCCTCGAC-GAGTACGTGGCGAACTGGTTTGGGCTGGATCAA 599
consensus_13398#2 TCCCAAGTACCAATGGGCGCTCAACGACTACTACGAGAGCACCGGCAAGGAAG------- 272
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 TCC-AAGTACCAATGGGCGCTCAACGACTACTACGAGAGCACCGGCAAGGAAG------- 595
consensus_13398#0 TCC-AAGTACCAATGGGCTCTCAACGACTACTACGAGAGCACCGGCAAGGTTCGTTCTCC 658
consensus_13398#2 -TGGAGTGTGGCAAAGCCTGGCAANCCAAAGGAGCTTACTACTAGCAAAGTGCAGAAAGT 331
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 -TGGAGTGTGGCAAAGC-TGGCAAGCCAAAGGAGCTTACTACTAGCAAAGTGCAGAAAGT 653
consensus_13398#0 CTGATTTCTCTTACGCGATTTTGCTGCTTTTGCATGTAATTTCGGGGAATCGGATTCGAT 718
consensus_13398#2 TTAGAAGGTCT-GTTCACATGATAAAACCAGCAGTTCTTTTCTGGAATTACGC---TGAG 387
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 TTAGAAGGTCT-GTTCACATGATAAAACCAGCAGTTCTTTTCTGGAATTACGC---TGAG 709
consensus_13398#0 CCATGTCGTGTAGGTTGCTTCGTGTGCATGTTTATTCTTTACTGGATCTGCGCCCGTAAT 778
consensus_13398#2 GAGCATTTTGCAGCGACTTCTTTCTGGG---TTGAATGTGTAGCTAAGCAAATGTGT--- 441
consensus_13398#3 -------------------------------------------------AANTGTGT--- 8
consensus_13398#1 GAGCATTTTGCAGCGACTTCTTTCTGGG---TTGAATGTGTAGCTAAGCAAATGTGT--- 763
consensus_13398#0 GAGAATCTGGGATAGAATTTGCTCGGTAATTTTCAGTATGAAATTGAGCAAACGTTTCTG 838
** ** *
consensus_13398#2 -------GGAGAAGTTCGATT-TGTTAGATCTTGGGGGCGTAAAGNCTGGTT--GTCTGT 491
consensus_13398#3 -------GGAGAAGTTCGATT-TGTTANATCTTGGGGGCGTAAAGG-TGGTT--GTCTGT 57
consensus_13398#1 -------GGAGAAGTTCGATT-TGTTAGATCTTGGGGGCGTAAAGG-TGGTT--GTCTGT 812
consensus_13398#0 TTTGGTTGGTGGGATGCACTTATGGTGGATGCTGCTGTAGTTTATCCTGGTGAAGTCTAC 898
** * * * ** ** * ** ** * ** * **** ****
consensus_13398#2 TTTTCC-CCG----CATGGAG-TCTCTTGGCAGGTTTA-CGGCTGCGCTGGAAGGGAATT 544
consensus_13398#3 TTTTCAACTG----CATGGAG-TNTCTTGGCAGGTTTAACGGGTGCGNTGGAAGGGAATT 112
consensus_13398#1 TTTTCAACTG----CATGGAG-TCTCTTGGCAGGTTTACGGGCTGCGCTGGAAGGGAATT 867
consensus_13398#0 TACTTGATGGTGAACATGGAGCTGTCCTTCTGACCATGTCCTTTAGATCATAAAAGTGTT 958
* * * ******* * ** * * * ** * **
consensus_13398#2 GA-----GACTGCTAGGC-TTTTGTTCACTCCTGCCAGGATCTC-TAT-GTAA-TCCTAT 595
consensus_13398#3 GA-----GACTGCTAGGCGTTTTGTTCACTCCTGCCAGGATCTC-TATTGTAA-TCCTAT 165
consensus_13398#1 GA-----GACTGCTAGGCGTTTTGTTCACTCCTGCCAGGATCTC-TATTGTAA-TCCTAT 920
consensus_13398#0 GATCTGTGCGTTCTGAGTGTGATAGATGCTCGTAGGTGTGTCTTATGTGGTAGGTACTAT 1018
** * * ** * * * *** * * *** * * *** * ****
consensus_13398#2 GTTATGACAAAATTGCATATTCCCAT-GCCTAATAGTGTTTTTTTTCCCCCCCGTGAAAA 654
consensus_13398#3 GTTATGACAAAATTGCATATTCGCAA-AAAAAAAAAAAAAAAAAAAA------------- 211
consensus_13398#1 GTTATGACAAAATTGCATATTCGCAATGCCTAATAGTGTTTTTTTTTTTGCCTTCCGGAA 980
consensus_13398#0 -TTGGGCCCGAAAGGCATTTGTGTTGTGGGGAATATATGCAAAGGGTTTTAGATTGAGTG 1077
** * * ** **** * ** *
consensus_13398#2 A----------------------------------------------------------- 655
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 AAAAAACAAATTGCATATTCTTCTGAGCTCTTTAAAAA---------------------- 1018
consensus_13398#0 TGTGCAGCAAAATTCAATTCGGCCTAACATCTGTAAAGGTGGATTCAAGCATAGGCCTGA 1137
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 AACACAAGGCAAGGATAGATACCTAATCGCCCTTTTTAGCATCTATACAAATGATCGAGA 1197
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 GTTATCACTTGGTAGAAAATGTGCAGTAGGCTTATCATATTGTATAGAGAGATGCTCTTG 1257
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 GAAGCTTTTTCAAAGTTGTTCCATGATTCTACCTTTGAGTGTACCTGCTGTTTGTATTAA 1317
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TTATTTCCGCTCAGCACACTTAATGACACTTATGATGATTTGTAAATTGCAACAATCATG 1377
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 ATTGACAAGAGGGTGAAATGACAAATTTGTCCCTGCTGATATTTGCGTCCTTCGTATCAG 1437
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TGGCAAATGCCCCTGGGACTGGTGTCACTGTAAACCTTTTGACCGTTCTGTTATTAAACG 1497
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 CTCCTAGAAGAACTGTCAACAGGGTATTTAGAAGTGTGATGTGGAGTTAGATATGAATAG 1557
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TTCATATGATAAGTATGTTCAGGATGGCTTTACTAGGTAGGATTGTATGGAAGAAACAGT 1617
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TCTGATTTCTTTACGTAATGGGACATAATTCCATTGCTTGGAGTGACTAAATCACATTAA 1677
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 GTGATTGGCAAACTGGCAAACATCTGATATTTAATAGACTAGCTCACTCCATTTTAACTG 1737
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 ATTTTATCTTAGGGGCCATAGAATACCTATGCCACCTTTGCATTTATGTACATTTATAAA 1797
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TACTTGTTTTACAACCTATCCTTTTTACACACTTGCACATTTGTAGAGAATGTTGGTGAT 1857
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TCCTTACAGATGTACAATTGCATTTGGTTATGTTCTAGGGAATGCCTGTTTTGTTTTAGG 1917
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 AGTGCCATCCCAAACAGACAATGTAGCAAGTTGGCGGAATCGTTGGTTATTTTTCAATGA 1977
consensus_13398#2 ------------------------------------------------------------
consensus_13398#3 ------------------------------------------------------------
consensus_13398#1 ------------------------------------------------------------
consensus_13398#0 TTTTTGTTACCACATGGACAATGTTTTATGAATGTTTTTTGTTCTAACTATTCTGCTTTG 2037
consensus_13398#2 ------------------------------
consensus_13398#3 ------------------------------
consensus_13398#1 ------------------------------
consensus_13398#0 TTCGAACTTCGAAGTAACATTGTCATAAGA 2067
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||