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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1373 fasta sequence
[GTAGCTGATGGGGCAGAGAAACCTATTGGATGGGGTCTCTATAACTCTGTGTCCATGTTTTGTGTTCGGCTGATGCAACTAGAAGAAGAGGCAAAAAGGGATCCAACATGTGCACTAAATATGGAAAGACTGCTTGAGGCAAGGATTTTATCTGCTGTGGATTTACGGCGCAGTTTAGGTCTCCCTTCAGTTCACACAAATGCTTATCGTCTCATCAACAGTGAAGGGGACAGATTGTCTGGTCTAATAGTGGATATCTTTGCTGATGTCGCTGTAGTTGCTTCATCTGCTGCTTGGGTTGAGAAATATAGGCATGAAATCCAGTTCCTTGTTAACAAAGTCAGTGATGTGAACCATATAAAGTGGAGATCATCAACAGATATTCTAAAAGAAGAAGGATTAGATGTATCAGAACAAAAGGATCCTGAATCGTCTTCACACTGTGGAACAGTGGAGGTCATGGAGAATGATGTTCTCTATCTAGTCTCATTGGAGGGGCAGAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCATTTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT-GGAGCTA-TGACCCAAAGCGGCCTCTT-CCTCAGAA-CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT-CTACGCCAAGCAGGGGCAGCCTGTGATCAT-CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTTTTTATATATGGAATATGGAAGA-TGTGTAAATCATAAAAAAGG]
[+] EMBL AK060232 [GTAGCTGATGGGGCAGAGAAACCTATTGGATGGGGTCTCTATAACTCTGTGTCCATGTTTTGTGTTCGGCTGATGCAACTAGAAGAAGAGGCAAAAAGGGATCCAACATGTGCACTAAATATGGAAAGACTGCTTGAGGCAAGGATTTTATCTGCTGTGGATTTACGGCGCAGTTTAGGTCTCCCTTCAGTTCACACAAATGCTTATCGTCTCATCAACAGTGAAGGGGACAGATTGTCTGGTCTAATAGTGGATATCTTTGCTGATGTCGCTGTAGTTGCTTCATCTGCTGCTTGGGTTGAGAAATATAGGCATGAAATCCAGTTCCTTGTTAACAAAGTCAGTGATGTGAACCATATAAAGTGGAGATCATCAACAGATATTCTAAAAGAAGAAGGATTAGATGTATCAGAACAAAAGGATCCTGAATCGTCTTCACACTGTGGAACAGTGGAGGTCATGGAGAATGATGTTCTCTATCTAGTCTCATTGGAGGGGCAGAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCATTTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGGAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGG AAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTTTTTATATATGGAATATGGAAGA TGTGTAAATCAT ]
[-] EMBL CB663492 [ GAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCATTTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT TTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTG ]
[-] EMBL CB649822 [ AAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT TTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTGTTTATATATGGAATATGGAAGAGTGTGTAAATCAAAAAAAAGG]
[+] EMBL CB000138 [ GTTTGTAAAAGAAGATGCGACTGCATTCATGAAACGTTCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAaaaaaaaa ]
[+] EMBL CB000403 [ TTTGTAAAAGAAGATGCGACTGCATTCATGAACTGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAaaaaaaaa ]
[+] EMBL CA999714 [ TGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAaaaaaaaa ]
[-] EMBL OSS14981A [ nCATGCTCTGGGAGCTATTNCCCCAAAGCGNCCTCTTCCCTAAGAACCCATTCAGGGTGCTGCATCAATGACCGNCCGAAAGGTTACAGTTCCTACGCCAAGCAGGGGCAGCCTGTGATCATCCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTTTTTATATATGGAATATGGAAGA TGTG ]
consensusID : consensus_13409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence
[GCAGCAGAATTTTGAATCATAGTATTTTGCTTCAAAAGAAATAAAGAAATTAAGTAAGGAGCATGTCTTAGATATACCTATTTTAGAGGAAGTCATGCGCTTTATGGGTACTTAAAACTTTAGATGGGTGAACAAGTCAAATAGAACCTCTTTATAAGACCAGACGGAATCAAATAGAACCTCTTTATAAGACCAGACGGAGGATCTGGTTCCAGTTTACCAGGTGTTTACCAGAAGCAAAAAACCATTGGTTTTCTGAAACTTGAGCTTGCTAGTGCTCTACTTTTAGTAACTGCTTCGATTATTATCTGTCCTGTTGTATTTAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAT]
[-] EMBL CB655263 [GCAGCAGAATTTTGAATCATAGTATTTTGCTTCAAAAGAAATAAAGAAATTAAGTAAGGAGCATGTCTTAGATATACCTATTTTAGAGGAAGTCATGCGCTTTATGGGTACTTAAAACTTTAGATGGGTGAACAAGTCAAATAGAACCTCTTTATAAGACCAGACGGAATCAAATAGAACCTCTTTATAAGACCAGACGGAGGATCTGGTTCCAGTTTACCAGGTGTTTACCAGAAGCAAAAAACCATTGGTTTTCTGAAACTTGAGCTTGCTAGTGCTCTACTTTTAGTAACTGCTTCGATTATTATCTGTCCTGTTGTATTTAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAT]
consensusID : consensus_13409#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence
[TTTTGCTTTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCTTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTTTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGTTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGTTCATGCTCTGGAGATATGACCCAAAGCGGCTTTTTCTTCAGAACCATTCAGGGTGTTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGTTCCGAGTGACCTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACCGCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCGCCGCCGCAGGAGACGCGCCGCCGCAGGCGCG]
[-] EMBL CB649821 [TTTTGCTTTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCTTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTTGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGGTATGACCCAAAGCGGCTTTTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCGCCGCCGCAGGAGACGCGCCGCCGCAGGCGCG]
[-] EMBL CB674021 [ AAGGTGCTATCTCAAGAAATGAGGTTTGGGATTTGGTAATCCTTGATCTTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTAAAGAAGCTTGAACGTTTTTGTGATGCAAGTGGTAAAGCCAGGGGGGTTATTCATGACATGTTCATGTTTTGGAGATATGACCCAAAGCGGCTTTTTCTTTAGAACCATTCAGGGTGTTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCTTGCATACCCTGAAGGCCGATATTTCAGCAATTATTTGTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACCGCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCTGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTTTAGNGCAGATCc ]
[-] EMBL CB663491 [ TTTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGTTACAAAGTGCCTCGGGTATGTATAGAAGTTTGAACGTTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGTTCATGCTCTGGAGATATGACCCAAAGCGGCCTTTTCTTCAGAACCATTCAGGGTGTTGCATTAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATTCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTTTTTCGAGTGACCTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACCGCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTC ]
consensusID : consensus_13409#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[ATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTGGAAGATCTATTTGTTACTTTGTAGCGCAAACAAACAAAAAGGGG]
[-] EMBL CB648015 [ATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTGGAAGATCTATTTGTTACTTTGTAGCGCAAACAAACAAAAAGGGG]
consensusID : consensus_13409#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[GGTGCTGAATCAATGACCGGCGGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCGGTAGATCCTGCATACCTTGAAGGCGGATATTTCAGCAATTACTTGTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCTTTTTACTGACCAATTACCGCACAGCATTTTCATAAGAGTTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAATTTTCTGAAGGAAAAACGCCGCCGCCGGTGAAGGGCCGCCG]
[-] EMBL CB648014 [GGTGCTGAATCAATGACCGGCGGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCGGTAGATCCTGCATACCTTGAAGGCGGATATTTCAGCAATTACTTGTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCTTTTTACTGACCAATTACCGCACAGCATTTTCATAAGAGTTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAATTTTCTGAAGGAAAAACGCCGCCGCCGGTGAAGGGCCGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13409#0 GTAGCTGATGGGGCAGAGAAACCTATTGGATGGGGTCTCTATAACTCTGTGTCCATGTTT 60
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 TGTGTTCGGCTGATGCAACTAGAAGAAGAGGCAAAAAGGGATCCAACATGTGCACTAAAT 120
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 ATGGAAAGACTGCTTGAGGCAAGGATTTTATCTGCTGTGGATTTACGGCGCAGTTTAGGT 180
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 CTCCCTTCAGTTCACACAAATGCTTATCGTCTCATCAACAGTGAAGGGGACAGATTGTCT 240
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 GGTCTAATAGTGGATATCTTTGCTGATGTCGCTGTAGTTGCTTCATCTGCTGCTTGGGTT 300
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 GAGAAATATAGGCATGAAATCCAGTTCCTTGTTAACAAAGTCAGTGATGTGAACCATATA 360
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 AAGTGGAGATCATCAACAGATATTCTAAAAGAAGAAGGATTAGATGTATCAGAACAAAAG 420
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 GATCCTGAATCGTCTTCACACTGTGGAACAGTGGAGGTCATGGAGAATGATGTTCTCTAT 480
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------------------------------------------------------------
consensus_13409#0 CTAGTCTCATTGGAGGGGCAGAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCAT 540
consensus_13409#2 ------------------------------------------------------------
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 ------GCAGCAGAATTTTGAATCATAGTATTTTGCTTCAAAAGAAATAAAGAAATTAAG 54
consensus_13409#0 TTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGT 600
consensus_13409#2 -----------------------------------------------------------T 1
consensus_13409#3 ------------------------------------------------------------
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 TAAGGAGCA-TGTCTTAGATATACCTATTTTAGAGGAAGTCATGCGCTTTATGGGTACTT 113
consensus_13409#0 TTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCA 660
consensus_13409#2 TTTGCTTTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCA 61
consensus_13409#3 -----------------------------------------------------------A 1
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 AAAACTTTAGATGGGTGAACAAGT----CAAATAGAACCTCTTTATAAGACCAGACGGAA 169
consensus_13409#0 TCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATT 720
consensus_13409#2 TCAGCACTAGACCTTGCCAATAAGAATATTATCTTGAATAAGCTTGACACCCAAAGGATT 121
consensus_13409#3 TCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATT 61
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 TCA--AATAGAACCTCTTTATAAGACCAGACGGAGGATCTGGTTCCAGTTTACCAGGTGT 227
consensus_13409#0 TCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATG-AGGT 779
consensus_13409#2 TCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATG-AGGT 180
consensus_13409#3 TCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATG-AGGT 120
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 TTACCAG--AAGCAAAAAACCATTGGTTTTCTGAAACTTGAGCTTGCTAGTGCTCTACTT 285
consensus_13409#0 CTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAG 839
consensus_13409#2 TTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAG 240
consensus_13409#3 CTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAG 180
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 TTAGTAACTG-----CTTCGATTATT---ATCTGTCCTGTTGTATTTAGGTGCTACAAAG 337
consensus_13409#0 TGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 899
consensus_13409#2 TGCCTCGGGTATGTACAGAAGCTTGAACGTTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 300
consensus_13409#3 TGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 240
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 TGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 397
consensus_13409#0 GTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAAC 959
consensus_13409#2 GTTACTCATGACATGTTCATGCTCTGGAGATATGACCCAAAGCGGCTTTTTCTTCAGAAC 360
consensus_13409#3 GTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAAC 300
consensus_13409#4 ------------------------------------------------------------
consensus_13409#1 GTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAAC 457
consensus_13409#0 CATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTCTACGCCAAGCAGGGGC 1019
consensus_13409#2 CATTCAGGGTGTTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 420
consensus_13409#3 CATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 360
consensus_13409#4 -------GGTGCTGAATCAATGACCGGCGGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 53
consensus_13409#1 CATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 517
**** ** ************* ************** ****************
consensus_13409#0 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTT 1079
consensus_13409#2 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTT 480
consensus_13409#3 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTT 420
consensus_13409#4 AGCCTGTGATCATCCGGTAGATCCTGCATACCTTGAAGGCGGATATTTCAGCAATTACTT 113
consensus_13409#1 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTT 577
*************** **************** ******* ***** *************
consensus_13409#0 GCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACC 1139
consensus_13409#2 GTTCCGAGTGACCTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACC 540
consensus_13409#3 GCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACC 480
consensus_13409#4 GTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCTTTTTACTGACCAATTACC 173
consensus_13409#1 GCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACC 637
* ********** ******************* ******** ** ** ************
consensus_13409#0 GCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 1199
consensus_13409#2 GCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 600
consensus_13409#3 GCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 540
consensus_13409#4 GCACAGCATTTTCATAAGAGTTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 233
consensus_13409#1 GCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 697
************* ****** ***************************************
consensus_13409#0 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 1257
consensus_13409#2 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 658
consensus_13409#3 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 598
consensus_13409#4 TAAGTCATACTTGTTAGATCAAGAAATTTTCTGAAGGAAAAACGCCGCCGCCGGTGAAGG 293
consensus_13409#1 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 755
************************** **** ******** * * * * * **
consensus_13409#0 TTTTGAAGAT-TATTTGTTAATTTCTAGCGCAGATCATTATTTACCC-TTGTTGAGATTA 1315
consensus_13409#2 TTTTGAAGAT-TATTTGTTAATTTCTAGCGCAGATCATTATTTACCCGCCGCCGCAGGAG 717
consensus_13409#3 TTTGGAAGATCTATTTGTTACTTTGTAGCGCAAACAAACAAAAAGGGG------------ 646
consensus_13409#4 GCCGCCG----------------------------------------------------- 300
consensus_13409#1 TTTTGAAGAT-TATTTGTTAAT-------------------------------------- 776
consensus_13409#0 ACGTTTTTAACACTTTTTTATATATGGAATATGGAAGATGTGTAAATCATAAAAAAGG 1373
consensus_13409#2 ACG-------CGCCGCCGCAGGCGCG-------------------------------- 736
consensus_13409#3 ----------------------------------------------------------
consensus_13409#4 ----------------------------------------------------------
consensus_13409#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||