These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1073 fasta sequence [AGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG-GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTC---GAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCACTTTAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK100184 [AGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTC GAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCA ] [+] EMBL C28151 [ TAGTAGCAAGACAATGTNTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGNGNCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGC ] [+] EMBL C26997 [ TAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCNACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTNACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGGTGNAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGNCGGAGATCCGCGACCCGAGGAAGGGCGCCCGTTTTTGGTTCGG AACTACGNCACCGCCG ] [+] EMBL AU091802 [ AGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCNACATCTCCNACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTNACGAGTCGTTCGCGGCGGCCAAGGNGCCGGCGCCGG GAAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGNGGAGATCCGCNACCCGAGGAAGGNCGCCCGCTTTTGGTTCGGNACCT ] [+] EMBL OS0429A [ AGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGC ] [+] EMBL AK111676 [ gtcttctttGTGCAGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCT AGGCGTTCTTGGGCCTC GAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCAT ] [+] EMBL CA997980 [ ACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTCGAGGAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGT ] [+] EMBL C97584 [ GGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGNTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCAA AAAAAAAAAN ] [+] EMBL CA999389 [ TGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCACTTTAAAAAAA ] [+] EMBL AU181839 [ TGTTAATTACTACTTNCTGNGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTTTTTTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTANAGCTAGCTAGCAGATTAGATTTNCTATATAAAGTGGTAGTANAAANATATGTCCTCCTANAGCTAACTAGTGTCTTGTAATGATTTCAGACTTNTTGGGCAACATGAGCAATGCATTTCGACTTCCCCTTTCCTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 290 fasta sequence [AAGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCNACCCGAGGAAGGGCGCCCGCTTNTGGNTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACNACGTCGCGGCGCGCNA-AATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCGCCGCGCCACCGNCGNCCAAGAAG] [+] EMBL AU062922 [AAGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCNACCCGAGGAAGGGCGCCCGCTTNTGGNTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACNACGTCGCGGCGCGCNA AATCCGCGGCGCCAAGG ] [+] EMBL C97083 [ AGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCNTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACNACGTCGCGGCGCGCGACATTCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCGCCGCGCCACCGNCGNCCAAGAAG] consensusID : consensus_13413#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence [GATAGTAGCAAGACAATGTGTGGGGTAGCGATCATCCCGACTTCGTCCCACCCACCGCCCCGCGCGCACGTACCTCCGACATCTCCGACAACACCATCCTCTCCAC] [+] EMBL D42618 [GATAGTAGCAAGACAATGTGTGGGGTAGCGATCATCCCGACTTCGTCCCACCCACCGCCCCGCGCGCACGTACCTCCGACATCTCCGACAACACCATCCTCTCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13413#0 --------------------AGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTG 40 consensus_13413#2 ----------------------------------------GATAGTAGCAAGACAATGTG 20 consensus_13413#1 AAGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTG 60 ******************** consensus_13413#0 TGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTC 100 consensus_13413#2 TGGGGTAGCGATCATC-CCGACTTCGTCCCACCCAC---CGCCCCGCGCGCACGTACCTC 76 consensus_13413#1 TGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGG-GCGGC 119 ***** ********** ************* *** * * *** * * consensus_13413#0 CGACATCTCCGAC------AACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTT 154 consensus_13413#2 CGACATCTCCGAC------AACACCATCCTCTCCAC------------------------ 106 consensus_13413#1 GGAGATCCGCNACCCGAGGAAGGGCGCCCGCTTNTGGNTCGGCACCTACGCCACCGCCGA 179 ** *** * ** ** * ** ** consensus_13413#0 CGCGGCGGCCAAGGCGCCGGCGCCGGGGAGGAAGACGGCGTACCGCGGCATCCGGCGCCG 214 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 GGAGGCCGCCC--GCGCCTACNACGTCGCGGCGCGCNAAATCCGCGGCGCCAAGGCCAAG 237 consensus_13413#0 GCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCT 274 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 CTCAACTTCCCCCCGACCATCGGCGCCGCGCCGCGCCACCGNCGNCCAAGAAG------- 290 consensus_13413#0 CGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACAT 334 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 CCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACC 394 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 GCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCA 454 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 GCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGC 514 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 CGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTCGAGGAGGA 574 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 GGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGC 634 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 TCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAG 694 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 CAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATG 754 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 AAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTG 814 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 CTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTA 874 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 ATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATA 934 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 AAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGA 994 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 CTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCACTTTAAAAAAAAANAAAAAAAAA 1054 consensus_13413#2 ------------------------------------------------------------ consensus_13413#1 ------------------------------------------------------------ consensus_13413#0 AAAAAAAAAAAAAAAAAAA 1073 consensus_13413#2 ------------------- consensus_13413#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||