These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 820 fasta sequence [AATAATCATCAAGCTTCTTCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC-GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC-GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC-GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC--GGGGTGGACCCGCGTGCGGCGC-AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG-CCAGTA-CCAGTGATCTCATTCTCATA-TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT-CACA---A---AAAAATAATGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTTATATTGATATTAATAAATTTAGATTAATAAATTTAGAAAA] [+] EMBL AK107930 [AATAATCATCAAGCTTCTTCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGT ] [+] EMBL AU182632 [ TCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGCAGCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCA ] [+] EMBL AU182637 [ CTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCCCGGGGGTGGACCCGCGTGCGGGGCAAGCCGACGGGA GGCACGT ] [+] EMBL AU174479 [ GCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGC ] [+] EMBL BI804003 [ GGGC GC TCGGCGCGACCCGGGATGGACAAGTCCCGCGCC CCGTGCAGGGCCA GTAGAGAAGGCGACGGCGCGCAAC CGGCCGACAAGGACGCGGCGGAGGTGA GCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGAC ATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT CACA ATGTAAAAA ] [+] EMBL BI801995 [ cGGATGGACAA TCCCGC CC CCGTCCA GGCCAGTTAGAGAA GCGACGGCGCGCAACGC GCCGACGAGGACGC GCGGAGGTGA GC GCAGGAGCGCGT CA GCC CCGAGGAGGAGAACCAGCAC GCCAT GCC CCGAC CA CCGCCAAGGAGCGC GCCAC GGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCAGA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTGGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT CACA A AAAAAaa ] [+] EMBL BI801163 [ ACAAGTCCCGC CCTCCGT CA GGCCAGGTAGAGAA GCGAC GCGCGCAAC C GCCGACAA GAC CGGCGGA GTGA GC GCAGGAGCGCGTGCA GCC CCGAGGAGGAGAAGCAGCACAGCCAT GCCGCCAAC CAGCCGCCAAGGAGCGCAGCCAC GGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC ACCCGACGGGAGGGCACGTCCAGGACGGC TCGCCGAGAGCC GCCGGTCGGGAC GCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT CACATGTA AAAAA ] [+] EMBL BI803754 [ CGCCCCCGTGCAGGGCCAGGTAGAGAAGGCGACGGCGCGCAAC C GCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATACTCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAACACCGAGTTCTCTCTTCGTTT CACATGTA AAAA ] [+] EMBL BI800256 [ GGCGGAGGTGAGGCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCCAGTACCCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTTCCACA A AA ] [+] EMBL BQ529572 [ GCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTT CACA AT GTAAATAATGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTTATATTGATATTAATAAATTTAGATTAATAAA ] [+] EMBL AU174480 [ AGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTT CAAA A AAAA ] [+] EMBL CF310037 [ TCTCTTCGTTT CACA AT GTAAATAATGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTTATATTGATATTAATAAATTTAGATTAATAAATTTAGAAAA] consensusID : consensus_13414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCCGGGGTGGACCCGCGTGCGGCGCANCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGANCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTCTCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTANAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTTCCCAATGTAAAAAAAAAAAAAAAAAA] [+] EMBL AU182633 [GCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCCGGGGTGGACCCGCGTGCGGCGCANCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGANCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTCTCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTANAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTTCCCAATGTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13414#0 AATAATCATCAAGCTTCTTCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATAC 60 consensus_13414#1 ------------------------------------------------------------ consensus_13414#0 TTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGC 120 consensus_13414#1 ------------------------------------------------------------ consensus_13414#0 CGCGGCGAACGTGGGCGCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCA 180 consensus_13414#1 ------------------------------------------------------------ consensus_13414#0 GGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAG 240 consensus_13414#1 ------------------------------------------------------------ consensus_13414#0 GCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCACGCCATGGCCGCCAACGC 300 consensus_13414#1 ------------------------------------------------------------ consensus_13414#0 AGCCGCCAAGGAGCGCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCC 360 consensus_13414#1 --------------GCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCC 46 ********************************************** consensus_13414#0 CGGGGTGGACCCGCGTGCGGCGCAGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGA 420 consensus_13414#1 CGGGGTGGACCCGCGTGCGGCGCANCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGA 106 ************************ *********************************** consensus_13414#0 GAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCA 480 consensus_13414#1 GANCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCA 166 ** ********************************************************* consensus_13414#0 CGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTC 540 consensus_13414#1 CGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTC 226 ************************************************************ consensus_13414#0 TCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTC 600 consensus_13414#1 TCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTC 286 ************************************************************ consensus_13414#0 ACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTT 660 consensus_13414#1 ACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTANAAGTGGTATCATGTT 346 ******************************************** *************** consensus_13414#0 GTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTTCACAAAAAAATAA 720 consensus_13414#1 GTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTTCCCAATGTAAAAA 406 ********************************** ************* *** ** ** consensus_13414#0 TGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTT 780 consensus_13414#1 AAAAAAAAAAAAA----------------------------------------------- 419 *** * ** consensus_13414#0 ATATTGATATTAATAAATTTAGATTAATAAATTTAGAAAA 820 consensus_13414#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||