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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 820 fasta sequence
[AATAATCATCAAGCTTCTTCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC-GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC-GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC-GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC--GGGGTGGACCCGCGTGCGGCGC-AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG-CCAGTA-CCAGTGATCTCATTCTCATA-TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT-CACA---A---AAAAATAATGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTTATATTGATATTAATAAATTTAGATTAATAAATTTAGAAAA]
[+] EMBL AK107930 [AATAATCATCAAGCTTCTTCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGT ]
[+] EMBL AU182632 [ TCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGCAGCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCA ]
[+] EMBL AU182637 [ CTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCCCGGGGGTGGACCCGCGTGCGGGGCAAGCCGACGGGA GGCACGT ]
[+] EMBL AU174479 [ GCCATAAAAGTAGCCATACTTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGCCGCGGCGAACGTGGGC GCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCAGGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCCTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGC ]
[+] EMBL BI804003 [ GGGC GC TCGGCGCGACCCGGGATGGACAAGTCCCGCGCC CCGTGCAGGGCCA GTAGAGAAGGCGACGGCGCGCAAC CGGCCGACAAGGACGCGGCGGAGGTGA GCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGAC ATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT CACA ATGTAAAAA ]
[+] EMBL BI801995 [ cGGATGGACAA TCCCGC CC CCGTCCA GGCCAGTTAGAGAA GCGACGGCGCGCAACGC GCCGACGAGGACGC GCGGAGGTGA GC GCAGGAGCGCGT CA GCC CCGAGGAGGAGAACCAGCAC GCCAT GCC CCGAC CA CCGCCAAGGAGCGC GCCAC GGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCAGA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTGGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT CACA A AAAAAaa ]
[+] EMBL BI801163 [ ACAAGTCCCGC CCTCCGT CA GGCCAGGTAGAGAA GCGAC GCGCGCAAC C GCCGACAA GAC CGGCGGA GTGA GC GCAGGAGCGCGTGCA GCC CCGAGGAGGAGAAGCAGCACAGCCAT GCCGCCAAC CAGCCGCCAAGGAGCGCAGCCAC GGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC ACCCGACGGGAGGGCACGTCCAGGACGGC TCGCCGAGAGCC GCCGGTCGGGAC GCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTT CACATGTA AAAAA ]
[+] EMBL BI803754 [ CGCCCCCGTGCAGGGCCAGGTAGAGAAGGCGACGGCGCGCAAC C GCCGACAAGGACGCGGCGGAGGTGAGGCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATACTCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAACACCGAGTTCTCTCTTCGTTT CACATGTA AAAA ]
[+] EMBL BI800256 [ GGCGGAGGTGAGGCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCCAGTACCCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTTCCACA A AA ]
[+] EMBL BQ529572 [ GCAGGCCGCCGAGGAGGAGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTT CACA AT GTAAATAATGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTTATATTGATATTAATAAATTTAGATTAATAAA ]
[+] EMBL AU174480 [ AGAAGCAGCAC GCCATGGCCGCCAACGCAGCCGCCAAGGAGCGC GCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCC GGGGTGGACCCGCGTGCGGCGC AGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGG CCAGTA CCAGTGATCTCATTCTCATA TCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTT CAAA A AAAA ]
[+] EMBL CF310037 [ TCTCTTCGTTT CACA AT GTAAATAATGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTTATATTGATATTAATAAATTTAGATTAATAAATTTAGAAAA]
consensusID : consensus_13414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[GCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCCGGGGTGGACCCGCGTGCGGCGCANCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGANCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTCTCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTANAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTTCCCAATGTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182633 [GCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCCCGGGGTGGACCCGCGTGCGGCGCANCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGAGANCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTCTCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTANAAGTGGTATCATGTTGTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTTCCCAATGTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13414#0 AATAATCATCAAGCTTCTTCTTATGTTCATCCAAATCCACAGCCATAAAAGTAGCCATAC 60
consensus_13414#1 ------------------------------------------------------------
consensus_13414#0 TTGAGTTTAGGTAGCCAGCATGCAGGCCGGGAAGAACGCGATGCAGTCGACCAAGGAGGC 120
consensus_13414#1 ------------------------------------------------------------
consensus_13414#0 CGCGGCGAACGTGGGCGCGTCGGCGCGCGCCGGGATGGACAAGTCCCGCGCCGCCGTGCA 180
consensus_13414#1 ------------------------------------------------------------
consensus_13414#0 GGGCCAGGTGGAGAAGGCGACGGCGCGCAACGCGGCCGACAAGGACGCGGCGGAGGTGAG 240
consensus_13414#1 ------------------------------------------------------------
consensus_13414#0 GCGGCAGGAGCGCGTGCAGGCCGCCGAGGAGGAGAAGCAGCACGCCATGGCCGCCAACGC 300
consensus_13414#1 ------------------------------------------------------------
consensus_13414#0 AGCCGCCAAGGAGCGCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCC 360
consensus_13414#1 --------------GCGCCACGGGCGGCGCCGGCGCGTACCACCCGTCGCAGGGCGCCCC 46
**********************************************
consensus_13414#0 CGGGGTGGACCCGCGTGCGGCGCAGCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGA 420
consensus_13414#1 CGGGGTGGACCCGCGTGCGGCGCANCCGACGGGAGGGCACGTCCAGGACGGCGTCGCCGA 106
************************ ***********************************
consensus_13414#0 GAGCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCA 480
consensus_13414#1 GANCCGGCCGGTCGGGACGGCCACCGGCACGGCGAGGCCCAGCGCCGCCCACAACCCGCA 166
** *********************************************************
consensus_13414#0 CGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTC 540
consensus_13414#1 CGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTC 226
************************************************************
consensus_13414#0 TCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTC 600
consensus_13414#1 TCATATCAATGTGACAATTTATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTC 286
************************************************************
consensus_13414#0 ACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTAGAAGTGGTATCATGTT 660
consensus_13414#1 ACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACGTGTTANAAGTGGTATCATGTT 346
******************************************** ***************
consensus_13414#0 GTGGGAGATGCTTAATTATGAAATAAAACAGAGTTCTCTCTTCGTTTCACAAAAAAATAA 720
consensus_13414#1 GTGGGAGATGCTTAATTATGAAATAAAACAGAGTACTCTCTTCGTTTCCCAATGTAAAAA 406
********************************** ************* *** ** **
consensus_13414#0 TGTAAATATAAGTCCTTATAGTATTTTTTATATTCATATTGATGTTAATTTTCTATATTT 780
consensus_13414#1 AAAAAAAAAAAAA----------------------------------------------- 419
*** * **
consensus_13414#0 ATATTGATATTAATAAATTTAGATTAATAAATTTAGAAAA 820
consensus_13414#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||