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Oryza sativa
cluster # 1342 cluster # 1342       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1342#0 length = 1726 sequences # 2  

consensusID : consensus_1342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1726
fasta sequence
                              [CGCGTCCGTTCCGACTCCCCGGAGAGCCGCCGATGGTGCAGACGTTGCCGGCGAGATCAAGGCGCAGTTTGTCCGAGCGGCGGACGCGGTCAGGGCGCTCGCGCCGATTCTTGAAGTCGGGAGGCGGAGCTACCATCCCCGGAGCTCAGTGTACCATGTTTCATCTCGGATGGTGTCAGTGATTGCGCTGCCGCATTCAGGATACGGAGGCAGCGACCTGTTGGATGTCGGAGGAGGGGAGAAGGTGGTGGGAGCAAGGAACTTGTCTTTGACTCTGCAAAAGCTCTATATCTGGGAGAAGAAGCTGTACGACGAGGTGAAGGCTGAAGAGAAAATGCGGCTCCTGCTTGCCAAGAACTCTAAGAGGCTGAAATTCTTGGATCAAAAAGGCGCTGAAGCTCCCAAGATTGATGCAACTCGTAATTTGGTTAGGAAGCTATCAACAAAAATACGGATAGCTGTGCGAGTTATTGCTAAGGTGTCGAAAAAGATAAACAGAGTAAGGGACGAGGAGTTATGGCCACAAGTTAATACCTTAATCCAAGGGTTTGTGAAAATGTGGCAAGATAAGCTGAACTGCTACCACATCCAGTGTCAAGCAATATCAGAGGCAAAAAACTTGGATTCAATAATTTCTGGTGGAACCAGTCGAGATCTGGCAATGGAGCTTGAACTAGAGTTGATTAAATGGATCGTCAATTTTTCCTCCTGGGTGAATGAGCAGAGGAGCTTCATCAAGGCACTGAATGGATGGCTGGCACTCTGTCTTAACTATCAGCAGGAGGAGACGGCTGATGGAGTTCCTCCGTATTCTCCTGGAAGAGTGGGCGCACCCCTTGTGTTTGTCATCTGTAATAGCTGGTCCCAAGCTATGGATCGGATTTCTGAGAAGGAGGTGATTACCAGCATGCAAGCTCTTGTGTCTAGTGTACGGAGCCTATGGGAGAAACAAAATGTTGAGCAAACTGAACAGCTGATTGCAATCCGGGAAAGAGAAAAATGGAACAAGATATTGGAAAGGAAGACCCTGGAGATTAACAAGGAGGCCGACACACTCAACAGAAAGCTAGCTCTAGTACCGGGCCGGCAAAGCCTTCTTCCAACAGCACAAACGTACCAGGTCCATTTTCTTGAGGCAAACAGTGTGCAGGTTAGTTTGAAGCGTGTTCTTGAAGCCCTAGAAAGTTACTCTTCCAATTCCCTGCGAGCTTTGGATGAGACCCTGAGGCATGCCGAAGAGGAAAGGTTGTCTAGAGAAAGAGCCAAAGTTTCATAGGCATTGGCATAGAGGTTCCATCTGACACTACAGTGAACACAGCTTGTAAAATACAAGGGTCTCCTCTCCAGGTGGTTATAATTTATCAGATCAATGCAGAATGTTCTGGGCAAATGCTGCTTGCAGATCAAATTTTTGTGGGGAAGTTCTGACTTTGGAGTTTTGCTAACTGACCGTTGTTTGTCGATGCAGTTCAGGCAAATGTCCTGTGTTGATCCATCATAATAGATATAGTTGTGTTGAAGTAGCAGGTACATTAGGTACATATAGGTGAAGTGCTCGTTTCGGTGCTAGTATGCAATGTACTGATCTTCTGTGTTGCCTTTTTCTTGGCCTCCATACAATTGAATGAATGAGCAAGAGTGCCCTTGGAATGAATGTGCAACTGTGCAAGAGTTGAAAGAGTTGAATGCAGTTCGCGGCGTTGTATTGAGTAAAAAAAAAAAAAAA]

[+] EMBL AK064019             [CGCGTCCGTTCCGACTCCCCGGAGAGCCGCCGATGGTGCAGACGTTGCCGGCGAGATCAAGGCGCAGTTTGTCCGAGCGGCGGACGCGGTCAGGGCGCTCGCGCCGATTCTTGAAGTCGGGAGGCGGAGCTACCATCCCCGGAGCTCAGTGTACCATGTTTCATCTCGGATGGTGTCAGTGATTGCGCTGCCGCATTCAGGATACGGAGGCAGCGACCTGTTGGATGTCGGAGGAGGGGAGAAGGTGGTGGGAGCAAGGAACTTGTCTTTGACTCTGCAAAAGCTCTATATCTGGGAGAAGAAGCTGTACGACGAGGTGAAGGCTGAAGAGAAAATGCGGCTCCTGCTTGCCAAGAACTCTAAGAGGCTGAAATTCTTGGATCAAAAAGGCGCTGAAGCTCCCAAGATTGATGCAACTCGTAATTTGGTTAGGAAGCTATCAACAAAAATACGGATAGCTGTGCGAGTTATTGCTAAGGTGTCGAAAAAGATAAACAGAGTAAGGGACGAGGAGTTATGGCCACAAGTTAATACCTTAATCCAAGGGTTTGTGAAAATGTGGCAAGATAAGCTGAACTGCTACCACATCCAGTGTCAAGCAATATCAGAGGCAAAAAACTTGGATTCAATAATTTCTGGTGGAACCAGTCGAGATCTGGCAATGGAGCTTGAACTAGAGTTGATTAAATGGATCGTCAATTTTTCCTCCTGGGTGAATGAGCAGAGGAGCTTCATCAAGGCACTGAATGGATGGCTGGCACTCTGTCTTAACTATCAGCAGGAGGAGACGGCTGATGGAGTTCCTCCGTATTCTCCTGGAAGAGTGGGCGCACCCCTTGTGTTTGTCATCTGTAATAGCTGGTCCCAAGCTATGGATCGGATTTCTGAGAAGGAGGTGATTACCAGCATGCAAGCTCTTGTGTCTAGTGTACGGAGCCTATGGGAGAAACAAAATGTTGAGCAAACTGAACAGCTGATTGCAATCCGGGAAAGAGAAAAATGGAACAAGATATTGGAAAGGAAGACCCTGGAGATTAACAAGGAGGCCGACACACTCAACAGAAAGCTAGCTCTAGTACCGGGCCGGCAAAGCCTTCTTCCAACAGCACAAACGTACCAGGTCCATTTTCTTGAGGCAAACAGTGTGCAGGTTAGTTTGAAGCGTGTTCTTGAAGCCCTAGAAAGTTACTCTTCCAATTCCCTGCGAGCTTTGGATGAGACCCTGAGGCATGCCGAAGAGGAAAGGTTGTCTAGAGAAAGAGCCAAAGTTTCATAGGCATTGGCATAGAGGTTCCATCTGACACTACAGTGAACACAGCTTGTAAAATACAAGGGTCTCCTCTCCAGGTGGTTATAATTTATCAGATCAATGCAGAATGTTCTGGGCAAATGCTGCTTGCAGATCAAATTTTTGTGGGGAAGTTCTGACTTTGGAGTTTTGCTAACTGACCGTTGTTTGTCGATGCAGTTCAGGCAAATGTCCTGTGTTGATCCATCATAATAGATATAGTTGTGTTGAAGTAGCAGGTACATTAGGTACATATAGGTGAAGTGCTCGTTTCGGTGCTAGTATGCAATGTACTGATCTTCTGTGTTGCCTTTTTCTTGGCCTCCATACAATTGAATGAATGAGCAAGAGTGC                                                                                    ]
[-] EMBL CA761748             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGAGGCCGGCCCCCTCAACAGAAAGCTAGCTCTAGTACGGGGCCGGCAAAGCCTTCTTCTAACAGCACAAACGTACCAGGTCCATCTTCTTGAGGCAAACAGTGTGCAGGTTAGTTTGAAGCGTGTTCTTGAAGCCCTAGAAAGTTACTCTTCCAATTCCATGCGAGCTTTGGATGAGACCCTGAGGCATGCCGAAGAGGAAAGGTTGTCTAGAGAAAGAGCCAAAGTTTTATAGGCATTGGCATAGAGGTTCCATCTGACACTACAGTGAACACAGCTTGTAAAATACAAGGGTCTCCTCTCCAGGTGGTTATAATTTATCAGATCAATGCAGAATGTTCTGGGCAAATGCTGCTTGCAGATCAAATTTTTGTGGGGAAGTTCTGACTTTGGAGTTTTGCTAACTGACCGTTGTTTGTCGATGCAGTTCAGGCAAATGTCCTGTGTTGATCCATCATAATAGATATAGTTGTGTTGAAGTAGCAGGTACATTAGGTACATATAGGTGAACTGCTCGTTACGGTGCTAGTATGCAATGTACTGATTTTCTGTGTTGCCTTTTTCTTGGCCTCCATACAATTGAATGAATGAGCAAGAGTGCCCTTGGAATGAATGTGCAACTGTGCAAGAGTTGAAAGAGTTGAATGCAGTTCGCGGCGTTGTATTGAGTAAAAAAAAAAAAAAA]


>consensus_1342#0 CGCGTCCGTTCCGACTCCCCGGAGAGCCGCCGATGGTGCAGACGTTGCCGGCGAGATCAA GGCGCAGTTTGTCCGAGCGGCGGACGCGGTCAGGGCGCTCGCGCCGATTCTTGAAGTCGG GAGGCGGAGCTACCATCCCCGGAGCTCAGTGTACCATGTTTCATCTCGGATGGTGTCAGT GATTGCGCTGCCGCATTCAGGATACGGAGGCAGCGACCTGTTGGATGTCGGAGGAGGGGA GAAGGTGGTGGGAGCAAGGAACTTGTCTTTGACTCTGCAAAAGCTCTATATCTGGGAGAA GAAGCTGTACGACGAGGTGAAGGCTGAAGAGAAAATGCGGCTCCTGCTTGCCAAGAACTC TAAGAGGCTGAAATTCTTGGATCAAAAAGGCGCTGAAGCTCCCAAGATTGATGCAACTCG TAATTTGGTTAGGAAGCTATCAACAAAAATACGGATAGCTGTGCGAGTTATTGCTAAGGT GTCGAAAAAGATAAACAGAGTAAGGGACGAGGAGTTATGGCCACAAGTTAATACCTTAAT CCAAGGGTTTGTGAAAATGTGGCAAGATAAGCTGAACTGCTACCACATCCAGTGTCAAGC AATATCAGAGGCAAAAAACTTGGATTCAATAATTTCTGGTGGAACCAGTCGAGATCTGGC AATGGAGCTTGAACTAGAGTTGATTAAATGGATCGTCAATTTTTCCTCCTGGGTGAATGA GCAGAGGAGCTTCATCAAGGCACTGAATGGATGGCTGGCACTCTGTCTTAACTATCAGCA GGAGGAGACGGCTGATGGAGTTCCTCCGTATTCTCCTGGAAGAGTGGGCGCACCCCTTGT GTTTGTCATCTGTAATAGCTGGTCCCAAGCTATGGATCGGATTTCTGAGAAGGAGGTGAT TACCAGCATGCAAGCTCTTGTGTCTAGTGTACGGAGCCTATGGGAGAAACAAAATGTTGA GCAAACTGAACAGCTGATTGCAATCCGGGAAAGAGAAAAATGGAACAAGATATTGGAAAG GAAGACCCTGGAGATTAACAAGGAGGCCGACACACTCAACAGAAAGCTAGCTCTAGTACC GGGCCGGCAAAGCCTTCTTCCAACAGCACAAACGTACCAGGTCCATTTTCTTGAGGCAAA CAGTGTGCAGGTTAGTTTGAAGCGTGTTCTTGAAGCCCTAGAAAGTTACTCTTCCAATTC CCTGCGAGCTTTGGATGAGACCCTGAGGCATGCCGAAGAGGAAAGGTTGTCTAGAGAAAG AGCCAAAGTTTCATAGGCATTGGCATAGAGGTTCCATCTGACACTACAGTGAACACAGCT TGTAAAATACAAGGGTCTCCTCTCCAGGTGGTTATAATTTATCAGATCAATGCAGAATGT TCTGGGCAAATGCTGCTTGCAGATCAAATTTTTGTGGGGAAGTTCTGACTTTGGAGTTTT GCTAACTGACCGTTGTTTGTCGATGCAGTTCAGGCAAATGTCCTGTGTTGATCCATCATA ATAGATATAGTTGTGTTGAAGTAGCAGGTACATTAGGTACATATAGGTGAAGTGCTCGTT TCGGTGCTAGTATGCAATGTACTGATCTTCTGTGTTGCCTTTTTCTTGGCCTCCATACAA TTGAATGAATGAGCAAGAGTGCCCTTGGAATGAATGTGCAACTGTGCAAGAGTTGAAAGA GTTGAATGCAGTTCGCGGCGTTGTATTGAGTAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)