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Oryza sativa
cluster # 13420 cluster # 13420       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13420#0 length = 1498 sequences # 11  
consensus_13420#1 length = 513 sequences # 1  
consensus_13420#2 length = 201 sequences # 1  

consensusID : consensus_13420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1498
fasta sequence
                              [GAAAGGCGTTTTCTCCGAGTCCTTAACAAAACTTGATTACCTTTCAATCAATCATAGCTTCTTTTGGAGCTTACCACTCACCACCATCGATCACCAGCTCCACCATCATAATCCACCCCTTTGAGACATACACCATGCTTACAAAGCTAAAATTAAGTTAAGCAGCAGGCGACCGTGCAAAGTCTAGTAAGCCACCCAAAAGTGAGCAGCAGCAACCAACAACTGAACCTACCCTGCTCTGCTCACACTGTCAGCCGATGCTGATCACCTCCTTCCAATCAATCAACCTGCCATTGCTGTACATGAGCCACACCACCATCTGAGCTCATATATAAACCCCCTCCCCACCCGCTGCCGCGACCTCCTCCCAGCCATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTG-ACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGC-GACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAA-GGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGC-CTCGACGGCTGGG-TCCGATGG-AAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA-AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGG-TTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTACATCAATA-ATT-AAAAAAAATGTTCATATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATCCCGTTACGTACCGTAT]

[+] EMBL AK103610             [GAAAGGCGTTTTCTCCGAGTCCTTAACAAAACTTGATTACCTTTCAATCAATCATAGCTTCTTTTGGAGCTTACCACTCACCACCATCGATCACCAGCTCCACCATCATAATCCACCCCTTTGAGACATACACCATGCTTACAAAGCTAAAATTAAGTTAAGCAGCAGGCGACCGTGCAAAGTCTAGTAAGCCACCCAAAAGTGAGCAGCAGCAACCAACAACTGAACCTACCCTGCTCTGCTCACACTGTCAGCCGATGCTGATCACCTCCTTCCAATCAATCAACCTGCCATTGCTGTACATGAGCCACACCACCATCTGAGCTCATATATAAACCCCCTCCCCACCCGCTGCCGCGACCTCCTCCCAGCCATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTG ACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGC GACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAA GGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGC CTCGACGGCTGGG TCCGATGG AAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGG TTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTACATCAATA ATT AAAAAAAAT                                                                                                 ]
[+] EMBL CF281050             [                                                                                                                                                                                                                                                                                                                                                                                 AGCCATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTGAACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCNGACGGTGGCGGCGCGCAGCGACAACGGCCGCGTGGGCGTCTACTACGACAAGGGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF282219             [                                                                                                                                                                                                                                                                                                                                                                                    CATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK061257             [                                                                                                                                                                                                                                                                                                                                                                                      TTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTG ACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGC GACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAA GGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGC CTCGACGGCTGGG TCCGATGG AAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGG TTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTAC                                                                                                                      ]
[+] EMBL AK069353             [                                                                                                                                                                                                                                                                                                                                                                                         CGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTG ACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGC GACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAA GGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGC CTCGACGGCTGGG TCCGATGG AAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGG TTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAGTAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTAC                                                                                                                      ]
[+] EMBL AU164588             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTG ACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGC GACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAA GGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGC CTCGACGGCTGGG TCCGATGG AAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI804140             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aACATCCGCGCTCGACGGCTGGGTTCCGATGGAAAGGTC GCACCT GATCTCC GCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAA GGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCACAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATGGTACTAGCTTCTTAATTTAGACCGTAGTTGG TTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCC ATGTGAGTACATCAATA ATTAAAAAAAAATGTTCATATGTAAAAAAAAAA                                                                             ]
[+] EMBL BI803707             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCCATGAAGAAAAACCGATCGATGATGGTACTAGCTTCTTAATTTAGACCGTAGTTGGCTTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTT GCCATAATTATATTCC ATGTGAGTACATC ATACATTAAAAAAAAATGTTCATATGTAAAAAAAAAA                                                                             ]
[-] EMBL CF282220             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGG TTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTACATCAATA ATT AAAAAAAATGTTCATATGTAAAAAAAA                                                                               ]
[-] EMBL CF281051             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCA AGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGG TTTGGTGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTACATCAAAA A                                                                                                             ]
[+] EMBL CF290821             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGTACATCAATA ATT AAAAAAAATGTTCATATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATCCCGTTACGTACCGTAT]


>consensus_13420#0 GAAAGGCGTTTTCTCCGAGTCCTTAACAAAACTTGATTACCTTTCAATCAATCATAGCTT CTTTTGGAGCTTACCACTCACCACCATCGATCACCAGCTCCACCATCATAATCCACCCCT TTGAGACATACACCATGCTTACAAAGCTAAAATTAAGTTAAGCAGCAGGCGACCGTGCAA AGTCTAGTAAGCCACCCAAAAGTGAGCAGCAGCAACCAACAACTGAACCTACCCTGCTCT GCTCACACTGTCAGCCGATGCTGATCACCTCCTTCCAATCAATCAACCTGCCATTGCTGT ACATGAGCCACACCACCATCTGAGCTCATATATAAACCCCCTCCCCACCCGCTGCCGCGA CCTCCTCCCAGCCATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGG ATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCT GGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGC TGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTGA CGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCGACGGTGGCGGCGCGCAACG ACAACGGCCGCGTGGGCGTCTACTACGACAAGGTGGACGTGTACGCGCAGTACAAGGACG TGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCG TCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCG CCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGCCTCGACGGCTGGG TCCGATGGAAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCG CCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATG GCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTT CTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTT CTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGAT CGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGG AGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTA GACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGT ACATCAATAATTAAAAAAAATGTTCATATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATCCCGTTACGTACCGTAT



consensusID : consensus_13420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence
                              [TCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCTATTATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCGATAATTATATTCCAATGTGAGTACATCAATAATTAAAAAAAATGTTCATATGTACACCTGTGTGTCTTGCTCGGCTTGCCTTTCGATTCTCTCTATAAAAAAAACTGAAGAAAAAAAA]

[+] EMBL CA999027             [TCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCTATTATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGGAGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCGATAATTATATTCCAATGTGAGTACATCAATAATTAAAAAAAATGTTCATATGTACACCTGTGTGTCTTGCTCGGCTTGCCTTTCGATTCTCTCTATAAAAAAAACTGAAGAAAAAAAA]


>consensus_13420#1 TCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCT ACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTTCTT CATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTTCTT CTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGATCTA TTATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGGAGT GAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTAGAC GTGAAGTGTCTGCATAATTCGATTTGCATTTGGCGATAATTATATTCCAATGTGAGTACA TCAATAATTAAAAAAAATGTTCATATGTACACCTGTGTGTCTTGCTCGGCTTGCCTTTCG ATTCTCTCTATAAAAAAAACTGAAGAAAAAAAA



consensusID : consensus_13420#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence
                              [CGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCANCTGCATGCGCCGTCGATGTCTAACTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCNCGGCTTCTCTTCTTCTTCNTGCTTAATTTTTCTCNCCGGAATCNATCATCTCATATCAATNAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU164587             [CGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCANCTGCATGCGCCGTCGATGTCTAACTGTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCNCGGCTTCTCTTCTTCTTCNTGCTTAATTTTTCTCNCCGGAATCNATCATCTCATATCAATNAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13420#2 CGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCANCTGCATGCGCCGTCGATGTCTAACT GTGTCTTCTTTCTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCNCGG CTTCTCTTCTTCTTCNTGCTTAATTTTTCTCNCCGGAATCNATCATCTCATATCAATNAA AAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      GAAAGGCGTTTTCTCCGAGTCCTTAACAAAACTTGATTACCTTTCAATCAATCATAGCTT 60
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      CTTTTGGAGCTTACCACTCACCACCATCGATCACCAGCTCCACCATCATAATCCACCCCT 120
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      TTGAGACATACACCATGCTTACAAAGCTAAAATTAAGTTAAGCAGCAGGCGACCGTGCAA 180
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      AGTCTAGTAAGCCACCCAAAAGTGAGCAGCAGCAACCAACAACTGAACCTACCCTGCTCT 240
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      GCTCACACTGTCAGCCGATGCTGATCACCTCCTTCCAATCAATCAACCTGCCATTGCTGT 300
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      ACATGAGCCACACCACCATCTGAGCTCATATATAAACCCCCTCCCCACCCGCTGCCGCGA 360
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      CCTCCTCCCAGCCATTTCGATCGATCAAGGAGAGCAAAGAGGGGATGTCGGTGATCAAGG 420
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      ATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCT 480
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      GGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGC 540
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      TGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTGA 600
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      CGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCGACGGTGGCGGCGCGCAACG 660
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      ACAACGGCCGCGTGGGCGTCTACTACGACAAGGTGGACGTGTACGCGCAGTACAAGGACG 720
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      TGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCG 780
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      TCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCG 840
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      CCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGCCTCGACGGCTGGG 900
                                                                                   

consensus_13420#1      ------------------------------------------------------------
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      TCCGATGGAAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCG 960
                                                                                   

consensus_13420#1      ---TCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATG 57
consensus_13420#2      -------------------------------------------------CGGCGGCGATG 11
consensus_13420#0      CCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATG 1020
                                                                        ***********

consensus_13420#1      GCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTT 117
consensus_13420#2      GCTACTTCCGCTTCCAGCAAGCANCTGCATGCGCCGTCGATGTCTAACTGTGTCTTCTTT 71
consensus_13420#0      GCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAGCTGTGTCTTCTTT 1080
                       *********************** ********************** *************

consensus_13420#1      CTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTT 177
consensus_13420#2      CTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCNCGGCTTCTCTTCTT 131
consensus_13420#0      CTTCATTTCCTCCTCCTCCTTCTCTTCTTCTTTTTAATTAGTTTCACGGCTTCTCTTCTT 1140
                       ********************************************* **************

consensus_13420#1      CTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGAT 237
consensus_13420#2      CTTCNTGCTTAATTTTTCTCNCCGGAATCNATCATCTCATATCAATNAAAAAAAAAAAAA 191
consensus_13420#0      CTTCTTGCTTAATTTTTCTCACCGGAATCAATCATCTCATATCAATGAAGAAAAACCGAT 1200
                       **** *************** ******** **************** ** *****   * 

consensus_13420#1      CTATTATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGG 297
consensus_13420#2      AAAAAAAAAA-------------------------------------------------- 201
consensus_13420#0      CGATGATAGTACTAGCTTCTTAATTTAGACCGTAGTTGGTTTGGAGCTAGTGTAGCTTGG 1260
                         *  * *                                                    

consensus_13420#1      AGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTA 357
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      AGTGAAAGGGAAAATTGGGGTATTCTGAAAAGATGCATAATAGACGTACAGCTGGGAGTA 1320
                                                                                   

consensus_13420#1      GACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCGATAATTATATTCCAATGTGAGT 417
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      GACGTGAAGTGTCTGCATAATTCGATTTGCATTTGGCAATAATTATATTCCAATGTGAGT 1380
                                                                                   

consensus_13420#1      ACATCAATAATTAAAAAAAATGTTCATATGTACACCTGTGTGTCTTGCTCGGCTTGCCTT 477
consensus_13420#2      ------------------------------------------------------------
consensus_13420#0      ACATCAATAATTAAAAAAAATGTTCATATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1440
                                                                                   

consensus_13420#1      TCGATTCTCTCTATAAAAAAAACTGAAGAAAAAAAA---------------------- 513
consensus_13420#2      ----------------------------------------------------------
consensus_13420#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATCCCGTTACGTACCGTAT 1498
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)