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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 635 fasta sequence
[TTTTGAGTCTCT-GGTTTTTCCTCTTTTTGTTCTTTCTGCGATGGGCAGACATGAGTGTACATCGAAGGCTCGAACTCGGAAATTATTTTTTATTTGATTATACAA-GAA-TGGATACAGTGTAACTCTACCAGATCATGTATA-GAAGAAAT-G-C-ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT-TGAG-AAAGAGGGTACA-CAACAACTAAAGTGTCTATGCCA-A-TTCCAAAACGTATT-CAATATCTTGCCGAATGCATTCT-TGACAAGCTTAATATATTGTGGAGT-AGTAGATAATTGATTGGCATTTCAT-AGTTTGG-ATGTGG-CA-AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA-TGCATTCTTGGG-A-ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT-TGTAAGGCGCAACC-TGTTTTGCCACAAA-CTCCAT-CA-CCTCG-CGCTCTGACAAGTTGCTTCCTTTCTT-CCT-CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG-AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTCTTGCGGAGGGCACCGTGGTAACCTTTGTATTTGATCAAACTTCCTTG]
[-] EMBL BI796737 [TTTTGAGTCTCT GGTTTTTCCTCTTTTTGTTCTTTCTGCGATGGGCAGACATGAGTGTACATCGAAGGCTCGAACTCGGAAATTATTTTTGATTTGATTATACAA GAA TGGATACAG GTAACTCTACCAGATCATGTATACGAAGAAAT G CGACATGATTGATGATATCTTCATTTACAAATACCCACCATATGTGAG AAAGAGGGTACA CAA AACTAAAGTGTCTATGCCA AGTTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGG ATTTCAT AGTTAGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTC TGTAAGGCGCAACCGTG TTTGCCACAAAGCTCCAT CAGCCTCGACGCTCTGACAAGTTGGTTCCT ]
[+] EMBL CB626022 [ GAGTATCTCTGTTTTTCCTCTTTTTTTTCTTTCTGCCATGGGCAGACATGAGTGTACATCGAAGGCTCGAACTCGGAAATTATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AACGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGTATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGTGTCAACAAAAGAGCTTCCAGTTC ]
[+] EMBL CB638384 [ GCTCGAACTCGGAAA TATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTC ]
[-] EMBL C99232 [ tttttGAACTCGGAAATTATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAANCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTNCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCNATC ]
[-] EMBL BM421737 [ ttttTCGGAAATTATTTTTTA TTGNTTNTACAA GAA TGGATACAG GTAACTCTACCAGATCATGTATA GAAGAAAT GCC ACATGACTGATGATATCTTCATTTACAAATACCCACCATA TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATGGGCATTTCAT AG TTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGAGTGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGG GCAACC TGTTTTG CACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGG CGACCTCCCTATCAGG AAACGGTATAACGG AACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTCTTGCGGAGGGCACCGTGGTAACCTTTGTATTTGATCAAACTTCCTTG]
[+] EMBL CB622423 [ TCGGAAATTATTTTTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AACGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGTATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGTGTCAACAAAAGAGCTTCCAGTTC ]
[-] EMBL BM421848 [ tTCGGAAA TATTTTTTA TTGATTATACAAGGAANTGGATACAGGGTAACTCTACCAGATCATGTATA GAAGAAATGG C ACATGACTGATGATATCTTCATTTACAAATACCCACCATA TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCTGTGACA ]
[+] EMBL CB676699 [ TATTTTTTATTTGATTATCCCT TAA GGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTCCAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTC ]
[+] EMBL CB000964 [ TTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGC ]
[+] EMBL CA998788 [ TTTATTTGATTATACAA GAA TGGATACAGTGTAACTCTACCAGATCATGTATA GAAGAAAT G C ACATGACTGATGATATCTTCATTTACAAATACCCACCATAT TGAG AAAGAGGGTACA CAACAACTAAAGTGTCTATGCCA A TTCCAAAACGTATT CAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGT AGTAGATAATTGATTGGCATTTCAT AGTTTGG ATGTGG CA AGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGG A ATGTCCGTCACAAACGCCACCTTTCTAACCTTCT TGTAAGGCGCAACC TGTTTTGCCACAAA CTCCAT CA CCTCG CGCTCTGACAAGTTGCTTCCTTTCTT CCT CACTATATAGGCCATCGGGAACTGGCCGACCTCCCTATCAGG AAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAAAGAGCTTCCAGTTC ]
[-] EMBL BI809560 [ GATATCTTCATTTACAAATA CCACCATAT TGAGCAAAGAGGGTACACCAACAACTAAAGTGTCTATGCCACA TTCCAAAACGTATTCCAATATCTTGCCGAATGCATTCT TGACAAGCTTAATATATTGTGGAGTCAGTAGATAATTGATTGGCATTTCATCAGTCTGGCATGTGGCCACAGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGA TGCATTCTTGGGCACATGTCCGTCACAAACGCCACCTTTCTAACCTTCTATGTAAGG GCCACG TGTTTTTGCACAAA CTCCATACA ACTCG CGCTCTGACAAGTTGCTTCCTTTCTTCCCTCCACTATATAGGCCATCGGGAACTGG CGA CTCCCTATCAGGCAAACGGTATAACGGCACCATCCGTAA CTCTG ]
consensusID : consensus_13425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[TTTTTTTTTTAACTCGGAAATTATTTTTTATTTGATTATACAAGAAGGGATACAGGGTAACTCTACCAGATCAGGTATAGAAGAAATGCACATGACTGATGATATCTTCATTTACAAATACCCACCATATGAGAAAGAGGGTACACAACAACTAAAGTGTCTATGCCAATTCCAAAACGTATTCAATATCTGCCGAATGCATTCTTGACAAGCTTAATATATGGTGGAGTAGTAGATAATGATGGCATTTCATAGTTGGGATGTGGCAAGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCTGTGGGAATGTCCGTCACAAACGCCACCTTTCTAACCCTTCTGTGTAAGGCGCAACCTGTTTGGCCACAAACTCCATCACCTCGCGCTCTGACAAGTGCTTCCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGCGAC]
[-] EMBL BI808795 [TTTTTTTTTTAACTCGGAAATTATTTTTTATTTGATTATACAAGAAGGGATACAGGGTAACTCTACCAGATCAGGTATAGAAGAAATGCACATGACTGATGATATCTTCATTTACAAATACCCACCATATGAGAAAGAGGGTACACAACAACTAAAGTGTCTATGCCAATTCCAAAACGTATTCAATATCTGCCGAATGCATTCTTGACAAGCTTAATATATGGTGGAGTAGTAGATAATGATGGCATTTCATAGTTGGGATGTGGCAAGCTTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCTGTGGGAATGTCCGTCACAAACGCCACCTTTCTAACCCTTCTGTGTAAGGCGCAACCTGTTTGGCCACAAACTCCATCACCTCGCGCTCTGACAAGTGCTTCCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGCGAC]
consensusID : consensus_13425#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence
[TTTTTTTTTACTCGGGGGAAATATTTTTTAATTTTGATTATACAAAAGGGAATGGATACAGGGGGTAACTCTACCCAGGATCATGTATAAGAAGAAATGCACATGACTGAAAAATGATATCTTCATTTTTACAAATACCCACCATATGAGAAAGGAGGGTACACAACAAACTAAAGTGTCTATGCCAATTTCCAAAACGTAATTCAATAATCTGCCGGAAGTGCATTCTGGACAAGCTTAAATATATG]
[-] EMBL BM418906 [TTTTTTTTTACTCGGGGGAAATATTTTTTAATTTTGATTATACAAAAGGGAATGGATACAGGGGGTAACTCTACCCAGGATCATGTATAAGAAGAAATGCACATGACTGAAAAATGATATCTTCATTTTTACAAATACCCACCATATGAGAAAGGAGGGTACACAACAAACTAAAGTGTCTATGCCAATTTCCAAAACGTAATTCAATAATCTGCCGGAAGTGCATTCTGGACAAGCTTAAATATATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13425#0 TTTTGAGTCTCTGGTTTTTCCTCTTTTTGTTCTTTCTGCGATGGGCAGACATGAGTGTAC 60
consensus_13425#1 ------------------------------------------------------------
consensus_13425#2 ------------------------------------------------------------
consensus_13425#0 ATCGAAGGCTCGAACTCGGAAATTATTTTTTA--TTTGATTATACAA----GAATGGATA 114
consensus_13425#1 --TTTTTTTTTTAACTCGGAAATTATTTTTTA--TTTGATTATACAA----GAAGGGATA 52
consensus_13425#2 --TTTTTTTTTACTCGGGGGAAATATTTTTTAATTTTGATTATACAAAAGGGAATGGATA 58
* * ** ** ********* ************* *** *****
consensus_13425#0 CAGTG--TAACTCTACC--AGATCATGTATA-GAAGAAATGCACATGACTGA----TGAT 165
consensus_13425#1 CAGGG--TAACTCTACC--AGATCAGGTATA-GAAGAAATGCACATGACTGA----TGAT 103
consensus_13425#2 CAGGGGGTAACTCTACCCAGGATCATGTATAAGAAGAAATGCACATGACTGAAAAATGAT 118
*** * ********** ***** ***** ******************** ****
consensus_13425#0 ATCTTCATTT--ACAAATACCCACCATATTGAGAAAGAGGGTACACAACAA-CTAAAGTG 222
consensus_13425#1 ATCTTCATTT--ACAAATACCCACCATAT-GAGAAAGAGGGTACACAACAA-CTAAAGTG 159
consensus_13425#2 ATCTTCATTTTTACAAATACCCACCATATGAGAAAGGAGGGTACACAACAAACTAAAGTG 178
********** ***************** ** *************** ********
consensus_13425#0 TCTATGCCAATT-CCAAAACGTA-TTCAATATCTTGCCGAA--TGCATTCTTGACAAGCT 278
consensus_13425#1 TCTATGCCAATT-CCAAAACGTA-TTCAATATCT-GCCGAA--TGCATTCTTGACAAGCT 214
consensus_13425#2 TCTATGCCAATTTCCAAAACGTAATTCAATAATCTGCCGGAAGTGCATTCTGGACAAGCT 238
************ ********** ******* **** * ******** ********
consensus_13425#0 TAA-TATATTGTGGAGTAGTAGATAATTGATTGGCATTTCATAGTTTGGATGTGGCAAGC 337
consensus_13425#1 TAA-TATATGGTGGAGTAGTAGATAAT--GATGGCATTTCATAGTTGGGATGTGGCAAGC 271
consensus_13425#2 TAAATATATG-------------------------------------------------- 248
*** *****
consensus_13425#0 TTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCT-TGGGAATGTCCGTCACAAA 396
consensus_13425#1 TTAATAAGATCCTTCCTCAGTATCTTCCCGGATGCATTCTGTGGGAATGTCCGTCACAAA 331
consensus_13425#2 ------------------------------------------------------------
consensus_13425#0 CGCCACCTTTCTAACCTTCTTGT--AAGGCGCAACCTGTTTTGCCACAAACTCCATCACC 454
consensus_13425#1 CGCCACCTTTCTAACCCTTCTGTGTAAGGCGCAACCTGTTTGGCCACAAACTCCATCACC 391
consensus_13425#2 ------------------------------------------------------------
consensus_13425#0 TCGCGCTCTGACAAGTTGCTTCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGCCG 514
consensus_13425#1 TCGCGCTCTGACAAGTGCTTCCCTTTCTTCCTCACTATATAGGCCATCGGGAACTGGC-G 450
consensus_13425#2 ------------------------------------------------------------
consensus_13425#0 ACCTCCCTATCAGGAAACGGTATAACGGCAACATCCGTAACCTCTGGGTGCGTCAACAAA 574
consensus_13425#1 AC---------------------------------------------------------- 452
consensus_13425#2 ------------------------------------------------------------
consensus_13425#0 AGAGCTTCCAGTTCTTGCGGAGGGCACCGTGGTAACCTTTGTATTTGATCAAACTTCCTT 634
consensus_13425#1 ------------------------------------------------------------
consensus_13425#2 ------------------------------------------------------------
consensus_13425#0 G 635
consensus_13425#1 -
consensus_13425#2 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||