These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1690 fasta sequence [CGAGTAGTAATTCCCACGCGCGGCGGGGGGCATTCCCGTACATGGTGTACTTTTCTGGGCGGATGTCTGCCTCCGTCGTGTATCCCCCCCGCTGGATTCTGTGACGGGTGCGTGCTCTGCTCCTCCCGCGCGCGTGCCGCCAAACCACACACACCCCCTCCCCTGCCCCCACCCACACCCGCCGGTCGCTGCCTCGCTCGCGCCCAAGCCGGATCACGCCTCGATCTCCCGTGAGCCGGGGCGTGCGTTGGGCGTTGGCGTACAATGCGGCTCGCGCTCGCTGCCGCGCCCGTGACGACGCGGATCCCCTGTTTTGTACACGCGCGGGCGCACGCTTTGTCGCGGTGGTGACGCGGGCTGCCGTTTCTCTGTTTCATTTGGGAGGGGGGGGTGTCGTCTCGTGTCGTGCTGCTGATGGCGTGTGTGTGTGTACGTGTGGTTGGTTTGCAGAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGAACCGGGTGGAGGACGAGGCCCGCCGCAACGGGAGCTGGGCCGCGCCGCACCCGTGGCTCAACCTCTTCATCTCCTCACGCGACATCGCCGCCTTCGACCGCGCCGTCCTCAACGGCATGCTCGCCGACGGCGTCGACGGGCCCATGCTCATCTACCCCATGCTCAAGTCCAAGTGAGTACTACTAGTATACTATTTGTTTATCTCCTGGGATGGGTTTTTGTTTAATCGGATAATTAATTAGCCCATTTGGTCCGTACTTATAATACGACGGGGGTTTCTGGTTGTCTTCCATCCCGTTCTGTTTTGGATTTAGCCTTGTCATATATCTGCCGCCATTAGGATTTAGCAGCCACTAACCCCAGGTTGCTATGATTGATGTAAATTCCTTTTTCTTCTTTTTTTTCTCTCTCTCTCTGTCTCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAATTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCT] [+] EMBL AK103510 [CGAGTAGTAATTCCCACGCGCGGCGGGGGGCATTCCCGTACATGGTGTACTTTTCTGGGCGGATGTCTGCCTCCGTCGTGTATCCCCCCCGCTGGATTCTGTGACGGGTGCGTGCTCTGCTCCTCCCGCGCGCGTGCCGCCAAACCACACACACCCCCTCCCCTGCCCCCACCCACACCCGCCGGTCGCTGCCTCGCTCGCGCCCAAGCCGGATCACGCCTCGATCTCCCGTGAGCCGGGGCGTGCGTTGGGCGTTGGCGTACAATGCGGCTCGCGCTCGCTGCCGCGCCCGTGACGACGCGGATCCCCTGTTTTGTACACGCGCGGGCGCACGCTTTGTCGCGGTGGTGACGCGGGCTGCCGTTTCTCTGTTTCATTTGGGAGGGGGGGGTGTCGTCTCGTGTCGTGCTGCTGATGGCGTGTGTGTGTGTACGTGTGGTTGGTTTGCAGAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGAACCGGGTGGAGGACGAGGCCCGCCGCAACGGGAGCTGGGCCGCGCCGCACCCGTGGCTCAACCTCTTCATCTCCTCACGCGACATCGCCGCCTTCGACCGCGCCGTCCTCAACGGCATGCTCGCCGACGGCGTCGACGGGCCCATGCTCATCTACCCCATGCTCAAGTCCAAGTGAGTACTACTAGTATACTATTTGTTTATCTCCTGGGATGGGTTTTTGTTTAATCGGATAATTAATTAGCCCATTTGGTCCGTACTTATAATACGACGGGGGTTTCTGGTTGTCTTCCATCCCGTTCTGTTTTGGATTTAGCCTTGTCATATATCTGCCGCCATTAGGATTTAGCAGCCACTAACCCCAGGTTGCTATGATTGATGTAAATTCCTTTTTCTTCTTTTTTTTCTCTCTCTCTCTGTCTCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAATTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCT] [-] EMBL AK109251 [ CTGTCTCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAATTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTCAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAAT ] consensusID : consensus_13450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1164 fasta sequence [AGCGAGCCGCTGCACAGTGACAT-CACGGTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGC------AGAGAGAGAGAGAC--AGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATGGACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTCGACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCCGCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGCACCGCGCACCTGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGCCATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCAGCTCGTCGTCGCCCCGTCCGGCGAGAAGTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTCGAAGCACGGCCTCGCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGCGGCACGCTCTCCAACGGCGGCGTGAGCGGGCAATCCTTCCGGTACGGGCCCCAGGTGTCCAACGTCGCCCAGCTCGAGGTGGTGACCGGC-GACGGCGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGACCTCTTCTTCTCCGTCCTCGGCGGCCTCTGCCAGTTCTGCGTCATCACCCGCGCCCTCATCCCTCTCTCCCCCGCGCCCCAAACAGTGCGGAGGACGCGGGTGGTGTACGCTAGCTTCGCGGACTACGCGGCGGACGCGGAGTGGCTGGTGACTCGGCCGCCGCACGAGGCGTTCGACTACGTGGAGGGATTCGCGTTCGTGCGGAGCGACGACCCGGTCAACGGCTGGCCAACGGTGCCCATCCCGGACGGCGCTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGGTCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAATAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGA] [+] EMBL CB644658 [AGCGAGCCGCTGCACAGTGACAT CACGGTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGC AGAGAGAGAGAGAC AGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATGGACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTCGACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCCGCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGCACCGCGCACCTGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGCCATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCAGCTCGTCGTCGCCCCGTCCGGCGAGAAGTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTCGAAGCACGGCCTCGCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGCGGCACGCTCTCCAACGGCGGCGTGAGCGGGCAATCCTTCCGGTACGGGCCCCAGGTGTCCAACGTCGCCCAGCTCGAGGTGGTGACCGGC GACGGCGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGACCTC ] [+] EMBL CB618338 [ ACATCCCCCTTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGCAGAGAGAGAGAGAGAGAGACAGAGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATGGACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTCGACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCCGCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGCACCGCGCACCTGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGCCATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCAGCTCGTCGTCGCCCCGTCCGGCGAGAAGTTCGCCGAAGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTCTAAGCACGGCCTCGCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGCGGCACGCTCTCCAACGGCGGGGTGAGCGGGCAATCCTTCCGGTACGGGCCCCCAGTGTCCAACGTCGCCCAGGTCc ] [+] EMBL CB673387 [ AGCTCGTCGCCTCCCCGTCCGGCGAGAATTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGGTGCTCCACTGGGCAGTGTAGAAGAACGGCCTCCCCCCCGCCTCCTGGACGGACTACCTCCGCCTCACCGTCGGAGGCACGCTCTCCTACGGTGGCGTGATCGGGCAATCCTTCCGGTACGGGCCCCAGGTGTCCAACGTCGCCCATCTCGAGGTGGTGACCGGC GACGGTGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGATCTCTTCTTCTCCGTCCTCGGCGGCCTCTGCCAGTTCTGCGTCATCACCCGCGCCCTCATCCCTCTCTCCCCCGCGCCCCAAACAGTGCGGAGGACGCGGGTGGTGTACGCTAGCTTCGCGGACTACGCGGCGGACGCGGAGTGGCTGGTGACTCGGCCGCCGCACGAGGCGTTCGACTACGTGGAGGGATTCGCGTTCGTGCGGAGCGACGACCCGGTCAACGGCTGGCCAACGGTGCCCATCCCGGACGGCGCTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGGTCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAATAGGGTGGGGGAGATGA ] [+] EMBL CB642078 [ atGGTGGTGACCGGCTGAATGCGAGTGCCATGTCTGCTCCCGCTCCGCCGACTCCGACCTCTTGTTCGCCGTCCTAGGCGGCCTCGGCCGGTTCGGCGTCATCACCCGCGCCCGCATCCCTCTCTCCCCCGCGCGCCAAACGGTGCGGTGGATGCGGGTGGTGTACGCCATCTTCGCGGACTACGCGGCGGACGCGGAGTGGCTGGTGACGCGGCCGCCGCACGAGGCGTTCGACTACGTGGAGGGATTCGCGTTCGTGCGGAGCGACGACCCGGTCAACGGCTGGCCAACGGTGCCCATCCCGGACGGCGCTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGGTCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAAGAGGGTGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTGA] consensusID : consensus_13450#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 739 fasta sequence [ATGCTCATCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT-CTCATT-CCCCCTGGTGAGATTGGGACGCCTTTCGACGGTGACACA-AAAAAAAAGG] [-] EMBL CB673388 [ATGCTCATCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT CTCATT CCCCCTGGTGAGATTGGGACGCCTTTCGACGGTGACACA AAAAAAAAG ] [-] EMBL CB644659 [ GCTCATCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT CTCATT CCCCCTGG GAGATTGGGACGCCTTTCGA ] [-] EMBL CB618339 [ CAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGGATGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAGTTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGGGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGTCCGGCGGCTGTGGCTAGGCTCTGCAGCAGGAGTTGCAAAAGGGGAAACGAAAGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTT CTCATT CCCCCAGGGGAGATTGGGATGCCTTTCGACGGTGACACACACAAAAAAGG] [-] EMBL CB677088 [ TGGCGAGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGCCGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCTACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCGGCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGGTACGACCCGCTCGCCATCCTCGCCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTT CTCATT CCCCCTGGTGAGATTGGGACGCCTTTCGA ] [-] EMBL CB637294 [ tCCGTGATCGTGTAAGAGACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTGGATGATGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGACGAGCACAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCAATGGGATGGACGACGTGTCAAGGGCAGTAGGGCCGGCGGCTGTGGCTCGGCTCTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTTNCTCATTCCCCCCTGGTGAGATTGGGACG CTTTCG ] [-] EMBL CB650215 [ TGGATGATGGCGCCCATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATCGGGCCGAGCCCAATGATGATGGTGATGATGATAGGGTCATTGTTAGGTCCATTTGGGAGGGGTGCAAAAGAGGGAGGTTTCGGTTCGATGGGATGGCTCACCTGTCAAGGGCAGTCGGGCCGGCGGCCGTGGCTCGGTTTTGCAGCAGGAGTTGCAAAAGGGAAAACGAAAGATGTAACCGTTTTCCTGCTTAGATTCTTTTTCTT CTCATT CCCCCTGGCGAGATTGGGA ] consensusID : consensus_13450#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [ATCGTGGTAAGAGGACGGATGATCGACGATGTGATTATCCTGTTTCTGGTTATTCTGGATGATGGCGACGATGAGGATGATGTGATGATGGGGATGAAGAGGAGGGATCAGGGACAGAGCACACATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAAGAGGGGGTTTCAGGTTCGATGGGATGGACAGACGTGTCAAGGCAGTAGGTCCAGGCAGGCTGTGGCTAGGCTCTGCACACGGAGTTGCACAAAGGGGAAACAGAAAGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTTCTCATTCCACCCTGGTGAGATTGGGATCCATTTCAGACAGGTGAAAAAAAAAA] [+] EMBL BI801477 [ATCGTGGTAAGAGGACGGATGATCGACGATGTGATTATCCTGTTTCTGGTTATTCTGGATGATGGCGACGATGAGGATGATGTGATGATGGGGATGAAGAGGAGGGATCAGGGACAGAGCACACATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGGGTGCAAAAAGAGGGGGTTTCAGGTTCGATGGGATGGACAGACGTGTCAAGGCAGTAGGTCCAGGCAGGCTGTGGCTAGGCTCTGCACACGGAGTTGCACAAAGGGGAAACAGAAAGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTTCTCATTCCACCCTGGTGAGATTGGGATCCATTTCAGACAGGTGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CGAGTAGTAATTCCCACGCGCGGCGGGGGGCATTCCCGTACATGGTGTACTTTTCTGGGC 60 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 GGATGTCTGCCTCCGTCGTGTATCCCCCCCGCTGGATTCTGTGACGGGTGCGTGCTCTGC 120 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 TCCTCCCGCGCGCGTGCCGCCAAACCACACACACCCCCTCCCCTGCCCCCACCCACACCC 180 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 GCCGGTCGCTGCCTCGCTCGCGCCCAAGCCGGATCACGCCTCGATCTCCCGTGAGCCGGG 240 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 GCGTGCGTTGGGCGTTGGCGTACAATGCGGCTCGCGCTCGCTGCCGCGCCCGTGACGACG 300 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CGGATCCCCTGTTTTGTACACGCGCGGGCGCACGCTTTGTCGCGGTGGTGACGCGGGCTG 360 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CCGTTTCTCTGTTTCATTTGGGAGGGGGGGGTGTCGTCTCGTGTCGTGCTGCTGATGGCG 420 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 TGTGTGTGTGTACGTGTGGTTGGTTTGCAGAGGGTGGGGGAGATGATGCGGCAGCTCAAG 480 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 TACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCGGGTACGTGGACTTCCTCTCGCGCGTG 540 consensus_13450#1 ------------------------------------------------------------ consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 AACCGGGTGGAGGACGAGGCCCGCCGCAACGGGAGCTGGGCCGCGCCGCACCCGTGGCTC 600 consensus_13450#1 -------------------------------------AGCGAGCCGCTGCACAGTGACAT 23 consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 AACCTCTTCATCTCCTCACGCGACATCGCCGCCTTCGACCGCGCCGTCCTCAACGGCATG 660 consensus_13450#1 CACGGTTACAGAGAGAGCTTAGCTCTGCTCGGGCTCGGCTCAGCTCAGCTCAGCTGCAGA 83 consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CTCGCCGACGGCGTCGACGGGCCCATGCTCATCTACCCCATGCTCAAGTCCAAGTGAGTA 720 consensus_13450#1 GAGAGAGAGACAGAGAAACAAGAAACGCAGCGGCGAGCCAAGATGATGCTCGCGTACATG 143 consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CTACTAGTATACTATTTGTTTATCTCCTGGGATGGGTTTTTGTTTAATCGGATAATTAAT 780 consensus_13450#1 GACCACGCCGCCGCGGCCGCGGAGCCGGACGCCGGCGCCGAGCCGGCGGTGGCCGCGGTC 203 consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 TAGCCCATTTGGTCCGTACTTATAATACGACGGGGGTTTCTGGTTGTCTTCCATCCCGTT 840 consensus_13450#1 GACGCGGCCGAGTTCGCGGCGGCGATGGACTTCGGCGGCCTGGTGAGCGCCCGCCCCGCC 263 consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CTGTTTTGGATTTAGCCTTGTCATATATCTGCCGCCATTAGGATTTAGCAGCCACTAACC 900 consensus_13450#1 GCCGTCGTCCGCCCGGCGAGCTCGGACGACGTGGCCAGCGCCATCCGCGCGGCGGCGCGC 323 consensus_13450#2 ------------------------------------------------------------ consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CCAGGTTGCTATGATTGATGTAAATTCCTTTTTCTTCTTTTTTTTCTCTCTCTCTCTGTC 960 consensus_13450#1 ACCGCGCACC----TGACCGTGGCCGCCCGCGGAAACGGCCACTCGGTGGCCGGGCAGGC 379 consensus_13450#2 -----------------------------------------------------ATGCTCA 7 consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 TCAGTTTGCCGCCAATGCACGCACGCACGCACACGAGCTGCTAATTAAAACGCCCCCTAA 1020 consensus_13450#1 CATGGCCCGCGGCGGCCTCGTCCTCGACATGCGCGCCCTCCCTCGCCGCATGCA-GCTCG 438 consensus_13450#2 TCTACCCCATGCTCAAGTCCAAGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCG 67 consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 TTAACACGTTTGCGTGTGACAGGTGGGACCCGGCCACGTCGGTGGCGCTGCCGAATGGCG 1080 consensus_13450#1 TCGTCGCCCCGTCCGGCGAGAAGTTCGCCGACGTCCCGGGCGGCGCGCTCTGGGAGGAGG 498 consensus_13450#2 AGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGC 127 consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 AGATCTTCTACCTGGTGGCGCTGCTCCGATTCTGCCGGCCCTACCCCGGTGGTGGCCCGC 1140 consensus_13450#1 TGCTCCACTGGGCAGTGTCGAAGCACGGCCTC-GCCCCCGCCTCCTGGACGGACTACCTC 557 consensus_13450#2 CGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCT 187 consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 CGGTGGACGAGCTGGTGGCGCAGAACAACGCAATCATTGACGCCTGCCGGTCCAACGGCT 1200 consensus_13450#1 CGCCTCACC-GTCGGCGGCAC-GCTCTCCAACGGCGGCGTGAGCGGGCAATCCTTCCGGT 615 consensus_13450#2 ACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCG 247 consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 ACGACTACAAGATATACTTCCCGAGCTACCACGCCCAGTCCGACTGGTCGCGCCACTTCG 1260 consensus_13450#1 ACGGGCCCCAGGTGTC---------CAACGTCGCCCAGCTCGAGGTGGTGACCGGCGACG 666 consensus_13450#2 GCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCG 307 consensus_13450#3 ------------------------------------------------------------ consensus_13450#0 GCGCCAAGTGGAGCCGCTTCGTCGACCGCAAGGCACGCTACGACCCGCTCGCCATCCTCG 1320 consensus_13450#1 GCGAGTGCCATGTCTGCTCCCGCTCCGCCGACCCCGACCTCTTCTTCTCCGTCCTCGGCG 726 consensus_13450#2 CCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGA 367 consensus_13450#3 -----------------------------------------------------------A 1 consensus_13450#0 CCCCCGGCCAGAACATCTTCGCCCGGACCCCCTCCTCCGTCGCCGCCGCCGCCGCCGTGA 1380 consensus_13450#1 GCCTCTGCCAGTTCTGCGTCATCACCCGCGCCCTCATCCCTCTCTCCCCCGCGCCCCAAA 786 * consensus_13450#2 TCGTG-TAAGAG-ACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTG 425 consensus_13450#3 TCGTGGTAAGAGGACGGATGATCGACGATG-TGATTATCCTGTTT-CTGGTT--ATTCTG 57 consensus_13450#0 TCGTG-TAAGAG-ACGGATGATCGACGATGGTGATTATGCTGTTTGCTGGGTTAATTCTG 1438 consensus_13450#1 CAGTGCGGAGGACGCGGGTGGTGTACGCTA---GCTTCGCGGACTACGCGGCGGACGCGG 843 *** ** *** ** * *** * * * * * * * * * * consensus_13450#2 GATGA-TGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATC-GGGAC 483 consensus_13450#3 GATGA-TGGCGACGATGAGGATGATG-TGATGATGGGGATGAAGAGGAGGGATCAGGGAC 115 consensus_13450#0 GATGA-TGGCGACGATGAGGATGATGGTGATGATGGGGATGAAGAGGAGGGATC-GGGAC 1496 consensus_13450#1 AGTGGCTGGTGACTCGGCCGCCGCACGAGGCGTTCG--ACTACGTGGAGGGATTCGCGTT 901 ** *** *** * * * * * * * * * * ******** * * consensus_13450#2 -GAGCACA-ATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGG-G 540 consensus_13450#3 AGAGCACACATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGG-G 174 consensus_13450#0 -GAGCACA-ATGATGATGGTGATGATGATAGGGTCATTGTTAGGTACATTTGGGAGGG-G 1553 consensus_13450#1 CGTGCGGA-GCGACGACCCGGTCAACGGCTGGCCAACGGT---GCCCATCCCGGACGGCG 957 * ** * ** ** * * * ** * ** * *** *** ** * consensus_13450#2 TGCAAAAGAGGGAGGTTTC-GGTTCGATGG--GATGGAC-GACGTGTCAAGGGCAGTAGG 596 consensus_13450#3 TGCAAAAAGAGGGGGTTTCAGGTTCGATGG--GATGGACAGACGTGTCAAGG-CAGTAGG 231 consensus_13450#0 TGCAAAAGAGGGAGGTTTC-GGTTCGATGG--GATGGAC-GACGTGTCAAGGGCAGTAGG 1609 consensus_13450#1 CTCACTTCGACGCCTCCCTCCTCCCGGCCAACGCCGGCCCGGTGCTCTACTGCCTCGAGG 1017 ** * ** * ** * * * * * * *** consensus_13450#2 GCCGGC--GGCTGTGGCT-CGGCTCTGCAGCAGG-AGTTGCA---AAAGGGAAAAC-GAA 648 consensus_13450#3 TCCAGGCAGGCTGTGGCT-AGGCTCTGCACACGG-AGTTGCAC--AAAGGGGAAACAGAA 287 consensus_13450#0 GCCGGC--GGCTGTGGCT-CGGCTCTGCAGCAGG-AGTTGCA---AAAGGGAAAAC-GAA 1661 consensus_13450#1 TCGCCCTGTACCAACGCGGCGGCGGCGGAGACGGCGGTGGCGACGACATGGACAATAGGG 1077 * * ** *** * * ** ** ** * * ** ** * consensus_13450#2 AGATGTAAACGTTTTCCTGCTTTGATTCTTTTTCTTCTCATTCC-CCCTGGTGAGATTGG 707 consensus_13450#3 AGATGTAAACGTTTTCCTGCTCTGATTCTTTTTCTTCTCATTCCACCCTGGTGAGATTGG 347 consensus_13450#0 AGATGTAAACGTTTTCCTGCTTTGATTCT------------------------------- 1690 consensus_13450#1 TGGGGGAGATGATGCGGCAGCTCAAGTACGTGCGGGGCCTGGAGTTCGCGGCGGGGGTCG 1137 * * * * * * * * consensus_13450#2 GACGCCTTTCGACGGTGACACAAAAAAAAAGG 739 consensus_13450#3 GATCCATTTCAGACAGGTGAAAAAAAAAA--- 376 consensus_13450#0 -------------------------------- consensus_13450#1 GGTACGTGGACTTCCTCTCGCGCGTGA----- 1164 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||