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Oryza sativa
cluster # 13454 cluster # 13454       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13454#0 length = 1967 sequences # 11  
consensus_13454#1 length = 638 sequences # 1  
consensus_13454#2 length = 336 sequences # 1  

consensusID : consensus_13454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1967
fasta sequence
                              [AGCTCGCCCCCCACCACCCCCTCGCGCGCGGCCCCCACCCACCCCACCCTCGCAGACATCACCGCCGCCCACCGTTCCCATCGCCGCCGCCGTCCTCTCCCCCGCCCGCGCCTATATCATCTTCTCCCCCCCACCCTCGCGTACAGCAACGCATGCCCCCCCTCCTCCCCTCCCCTCCCGCTCGCCGCCATTGACCGAGCGATCTGCTGCCTCGCTCGCGAACTCCTACCCCGCCCGAGCCCGAGCCCAGGCCGTGGCCGCCGCGAGATCTCCGGCTGCTTTTCAGGTATGGTCGCCGCCTCCGGCCTCGCGCCGCCGCGGCTGGCGGTCTCCTGCCCGCGTGCAGGCGGGGCGCGGCTGAGGCGGACACCACCGGGTTGGCTTCCTCCGATCCGCTCCCGTGGCGTTGGCGGGGCCCGCGGCCGCGCAGCTCCGGTGCTGCGCCTCCACCGTCGACGACGGCGTCGTCTCCGCCGCGGCGGCCCCCAAGCCCCGCCTCCCCAGGGTCGTCGGTATGGGTTCAAAACTCATTGGATGCGGATCGGCCACTCCATCGCTTAGCGTTTCAAATGATGACCTTTCTAAAATAGTTGAAACATCAGATGAATGGATCGCAGCACGGACTGGGATTCGGAATAGGCGAGTTCTTTCAGGAAATGAGACACTGCGCGAGCTTTCAGTACAGGCAGCAAAAAAAGCTCTTGAGATGGCTCAAGTAAATGCTGATGATGTTGACCTTGTTCTCCTTTGCACGTCTACCCCAGATGATCTGTTTGGAGGTGCTGCTCAGGTGCTGGCGGAGGTGGGATGCGCAAATGCATTTGGCTTTGATATCACTGCTGCATGTAGTGGGTTTATTATTGGTTTAATTACGGCTACTCGTTTTATCAAAGGTGGAGGCATCC-GGAATATTCTAGTAATTGGTGCCGATGCTCTTTCACAATTTGT-GGATTGG-ACAGACAGAGGTACATGCATCCTCTTTGGT-GAT-GCTGCTGGT-GCTGTTTTGGTTCA-GGCATG-CAGTGCTGAT-GAAGATGGCTTGCTAGGTTTTTGCGTTCAAAGTGAT-GGCAACGGACAAAAGCACTTAAATTGTGTCTCGTCGCATGTT-GAGTCTAT-CCTG-TCG-AAGACC-AATGGTGTCCCTAGCTTCCCACCTAAAAAGGCAACCTTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT-CATTCCGCG-CGGTAAACATTTG-CAACAA-CCAAACA-CCGTTCCGAGATTTCATGTAC-GTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTC-CGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACA-CAGCTTGGCTGTCA-GTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGA-TGCGTAGAAATATTTAAATCCGGGA-TTGAACTTAGCTGG-CCTTGAGGGAATATTAATATTGTAAAGTTA-CTGGGCCTTCTTAACAGGGTGCGCCCTGAAAAATTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAATAA-GCATGTAAGAAAGTGATGGATGTTTGTTGTAGGTCAATCATGAAAGAATG]

[+] EMBL AK120067             [AGCTCGCCCCCCACCACCCCCTCGCGCGCGGCCCCCACCCACCCCACCCTCGCAGACATCACCGCCGCCCACCGTTCCCATCGCCGCCGCCGTCCTCTCCCCCGCCCGCGCCTATATCATCTTCTCCCCCCCACCCTCGCGTACAGCAACGCATGCCCCCCCTCCTCCCCTCCCCTCCCGCTCGCCGCCATTGACCGAGCGATCTGCTGCCTCGCTCGCGAACTCCTACCCCGCCCGAGCCCGAGCCCAGGCCGTGGCCGCCGCGAGATCTCCGGCTGCTTTTCAGGTATGGTCGCCGCCTCCGGCCTCGCGCCGCCGCGGCTGGCGGTCTCCTGCCCGCGTGCAGGCGGGGCGCGGCTGAGGCGGACACCACCGGGTTGGCTTCCTCCGATCCGCTCCCGTGGCGTTGGCGGGGCCCGCGGCCGCGCAGCTCCGGTGCTGCGCCTCCACCGTCGACGACGGCGTCGTCTCCGCCGCGGCGGCCCCCAAGCCCCGCCTCCCCAGGGTCGTCGGTATGGGTTCAAAACTCATTGGATGCGGATCGGCCACTCCATCGCTTAGCGTTTCAAATGATGACCTTTCTAAAATAGTTGAAACATCAGATGAATGGATCGCAGCACGGACTGGGATTCGGAATAGGCGAGTTCTTTCAGGAAATGAGACACTGCGCGAGCTTTCAGTACAGGCAGCAAAAAAAGCTCTTGAGATGGCTCAAGTAAATGCTGATGATGTTGACCTTGTTCTCCTTTGCACGTCTACCCCAGATGATCTGTTTGGAGGTGCTGCTCAGGTGCTGGCGGAGGTGGGATGCGCAAATGCATTTGGCTTTGATATCACTGCTGCATGTAGTGGGTTTATTATTGGTTTAATTACGGCTACTCGTTTTATCAAAGGTGGAGGCATCC GGAATATTCTAGTAATTGGTGCCGATGCTCTTTCACAATTTGT GGATTGG ACAGACAGAGGTACATGCATCCTCTTTGGT GAT GCTGCTGGT GCTGTTTTGGTTCA GGCATG CAGTGCTGAT GAAGATGGCTTGCTAGGTTTATGCGTTCAAAGTGAT GGCAACGGACAAAAGCACTTAAATTGTGTCTCGTCGCATGTT GAGTCTAT CCTG TCG AAGACC AATGGTGTCCCTAGCTTCCCACCTAAAAAGGCAACCTTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT CATTCCGCG CGGTAAACATTTG CAACAA CCAAACA CCGTTCCGAGATTTCATGTAC GTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTC CGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACA CAGCTTGGCTGTCA GTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGA TGCGTAGAAATATTTAAATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA CTGGGCCTTCTTAACAGGGTGCGCCCTGAAAAATTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAATAA GCATGTAAGAAAGTGATGGATGTTT                         ]
[+] EMBL AA751713             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gGCGCAAATGCATTTGGCTTTGATATCACTGCTGCATGTAGTGGGTTTATTATTGGTTTAATTACGGCTACTCGTTTTATCAAAGGTGGAGGCATCCGGGAATATTCTAGTAATTGGTGCCGATGCTCTTTCACAATTTGTGGGATTGGNACAGACAGAGGTACATGCATCCTCTTTGGTGGATGGCTGCTGGTGGCTGTTTTGGTTCAGGGCATGTCAGTGCTGATGGAAGATGGCTTGCTAGGTTTTTGCGTTCAAAGTGATGGGCAACGGACAAAAGCACTTAAATTGGGTCTCGTCGCATGTTGGAGTCTATCCCTGATCGAAANNCCAAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF196810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTAGGTTTTTGCGTTCAAAGTGAT GGCAACGGACAAAAGCACTTAAATTGTGTCTCGTCGCATGTT GAGTCTAT CCTG TCG AAGACC AATGGTGTCCCTAGCTTCCCACCTAAAAAGGCAACCTTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT CATTCCGCG CGGTAAACATTTG CAACAA CCAAACA CCGTTCCGAGNNNTCATGTAC GTGGCCNNNNNNTAAGTCTTnnnn                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BE040300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   C AATGGTGTCCCTAGCTTCCCACCTAAAAAGGCAACCTTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT CATTCCGCG CGGTAAACATTTG CAACAA CCAAACA CCGTTCCGAGATTTCATGTACAGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTC CGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCG TACA CAGCTTGGCTGTCA GTGTGG AACAAGTCTGGATTG CCTACTAGCTCTTTGTAGTT AAGCGA TGCGTA AAATATTT AATCCCGGA TTGAACCTATCTGG CCTTGAGGGAATATT ATATTGTAAAGTAC CTGGGCCTT TTACAAGGGTGCG CCTG  AAATTTTAATTG ACT TGGgt                                                                         ]
[-] EMBL CB634848             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT CATTCCGCG CGGTAAACATTTG CAACAA CCAAACA CCGTTCCGAGATTTCATGTAC GTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTC CGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACA CAGCTTGGCTGTCA GTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGA TGCGTAGAAATATTTAAATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA CTGGGCCTTCTTAACAGGGTGCGCCCTGAAAATTTTTAATTGAACTGTGGTCAGCGTTCT                                                                 ]
[-] EMBL CB622459             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGAATGGAAAGGAGGTTTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT CATTCCGCG CGGTAAACATTTG CAACAA CCAAACA CCGTTCCGAGATTTCATGTAC GTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTC CGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACA CAGCTTGGCTGTCA GTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGA TGCGTAGAAATATTTAAATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA CTGGGCCTTCTTAACAGGGTGCGCCCTGAAAATTTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAATAA GCATGTAAGAAAGTGATGGATGTTTGTTGTAGGTCAATCATGAATGAATG]
[-] EMBL CB617791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAT CATTCCGCG CGGTAAACATTTG CAACAA CCAAACA CCGTTCCGAGATTTCATGTAC GTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTC CGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACA CAGCTTGGCTGTCA GTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGA TGCGTAGAAATATTTAAATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA CTGGGCCTTCTTAACAGGGTGCGCCCTGAAAATTTTTAATTGAACTGGGGTCAGCGTTCTGGCACTGATAATAA GCATGTAAGAAAGTGATGGATGTTTNTTGTAGGTCAATCTTTAAAGAAT ]
[+] EMBL BI799751             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGGT CTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAATCCATTCCGCGCCGGTAAACATTTGCCAACAACCCAAACACCCGTTCCGAGATTTCATGTAC GTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTCGCGACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACACCAGCTTGGCTGTCACGTGTGGTAACCAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGACTGCGTAGAAATATTTAAATCCGGGACTTGAACTTAGCTGGCCCTTGAGGGAATATTAATATTGTAAAGTTACCTGGGCCTTCTTAACAGGGTGCGCCCTGAAAATTTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAATAACGCATGTAAGAAAGTGATGGATGTTTGTTGTAGGTCAAaaaaaaaa     ]
[+] EMBL AA750082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACA CAGCTTGGCTGTCA GTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGA TGCGTAGAAATATTTAAATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA C                                                                                                                            ]
[+] EMBL AU058099             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTTGGCTGTCA GTGTGGTAACAAGNCTGGATTGTACTACTAGCNCTTTGTAGTTCAANCGA TNCGTAGAAATATTTAAATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA NTGGGCCTTCTTAACAGGGTGCGCCCTGAAAAATTTTAATTGAACTGTGGTCANCGTTCTGGCACTGATAAAAAaaaaaaaaa                                          ]
[+] EMBL AA749662             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAGCGA TGCGTAGAAATATTT AATCCGGGA TTGAACTTAGCTGG CCTTGAGGGAATATTAATATTGTAAAGTTA CTGGGCCTTCTTAACAGGGNNCGCCCTGAAAAATTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAATAA GCATGTAAGAAAGTGATng                               ]


>consensus_13454#0 AGCTCGCCCCCCACCACCCCCTCGCGCGCGGCCCCCACCCACCCCACCCTCGCAGACATC ACCGCCGCCCACCGTTCCCATCGCCGCCGCCGTCCTCTCCCCCGCCCGCGCCTATATCAT CTTCTCCCCCCCACCCTCGCGTACAGCAACGCATGCCCCCCCTCCTCCCCTCCCCTCCCG CTCGCCGCCATTGACCGAGCGATCTGCTGCCTCGCTCGCGAACTCCTACCCCGCCCGAGC CCGAGCCCAGGCCGTGGCCGCCGCGAGATCTCCGGCTGCTTTTCAGGTATGGTCGCCGCC TCCGGCCTCGCGCCGCCGCGGCTGGCGGTCTCCTGCCCGCGTGCAGGCGGGGCGCGGCTG AGGCGGACACCACCGGGTTGGCTTCCTCCGATCCGCTCCCGTGGCGTTGGCGGGGCCCGC GGCCGCGCAGCTCCGGTGCTGCGCCTCCACCGTCGACGACGGCGTCGTCTCCGCCGCGGC GGCCCCCAAGCCCCGCCTCCCCAGGGTCGTCGGTATGGGTTCAAAACTCATTGGATGCGG ATCGGCCACTCCATCGCTTAGCGTTTCAAATGATGACCTTTCTAAAATAGTTGAAACATC AGATGAATGGATCGCAGCACGGACTGGGATTCGGAATAGGCGAGTTCTTTCAGGAAATGA GACACTGCGCGAGCTTTCAGTACAGGCAGCAAAAAAAGCTCTTGAGATGGCTCAAGTAAA TGCTGATGATGTTGACCTTGTTCTCCTTTGCACGTCTACCCCAGATGATCTGTTTGGAGG TGCTGCTCAGGTGCTGGCGGAGGTGGGATGCGCAAATGCATTTGGCTTTGATATCACTGC TGCATGTAGTGGGTTTATTATTGGTTTAATTACGGCTACTCGTTTTATCAAAGGTGGAGG CATCCGGAATATTCTAGTAATTGGTGCCGATGCTCTTTCACAATTTGTGGATTGGACAGA CAGAGGTACATGCATCCTCTTTGGTGATGCTGCTGGTGCTGTTTTGGTTCAGGCATGCAG TGCTGATGAAGATGGCTTGCTAGGTTTTTGCGTTCAAAGTGATGGCAACGGACAAAAGCA CTTAAATTGTGTCTCGTCGCATGTTGAGTCTATCCTGTCGAAGACCAATGGTGTCCCTAG CTTCCCACCTAAAAAGGCAACCTTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCG CTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACC TGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGC TGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAA CACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAA GGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCTGGACTTACATGGGGTTCAGCTAT TGTCAAATGGTGCTAATCATTCCGCGCGGTAAACATTTGCAACAACCAAACACCGTTCCG AGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTCC GACATTGTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTC CTTATTCATATATTCCTTTGGCTCGTTACACAGCTTGGCTGTCAGTGTGGTAACAAGTCT GGATTGTACTACTAGCTCTTTGTAGTTCAAGCGATGCGTAGAAATATTTAAATCCGGGAT TGAACTTAGCTGGCCTTGAGGGAATATTAATATTGTAAAGTTACTGGGCCTTCTTAACAG GGTGCGCCCTGAAAAATTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAATAAGCA TGTAAGAAAGTGATGGATGTTTGTTGTAGGTCAATCATGAAAGAATG



consensusID : consensus_13454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 638
fasta sequence
                              [TTTACCTGCTTCCAGAATTGATTGGTGGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCAGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAACATTCCGCGCGGTAAACATTTGCAACAACCAAACACCGTTCAAAAAAATCAGGTACGTGGCCTAGGTAAAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTCCGACATGGGGGAGAGGGTCAAGAGCTCCCCCTGGAGGAGGGGGGAGGGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTGCTCTCT]

[-] EMBL CB634847             [TTTACCTGCTTCCAGAATTGATTGGTGGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCAGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAAACATTCCGCGCGGTAAACATTTGCAACAACCAAACACCGTTCAAAAAAATCAGGTACGTGGCCTAGGTAAAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTCCGACATGGGGGAGAGGGTCAAGAGCTCCCCCTGGAGGAGGGGGGAGGGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTGCTCTCT]


>consensus_13454#1 TTTACCTGCTTCCAGAATTGATTGGTGGTTGCTGCATCAAGCTAATCAGCGGATTATTGA TGCTGCTGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTA CGGAAACACCAGTGCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAA GGTGAAGGCAGGCGATGTTATTGCAGCATCAGGTTTTGGTGCAGGACTTACATGGGGTTC AGCTATTGTCAAATGGTGCTAAACATTCCGCGCGGTAAACATTTGCAACAACCAAACACC GTTCAAAAAAATCAGGTACGTGGCCTAGGTAAAAGTCTTCCAGGGTCATTTGCCCTTTCC CTGTCCGACATGGGGGAGAGGGTCAAGAGCTCCCCCTGGAGGAGGGGGGAGGGGGCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTATGTGCTCTCT



consensusID : consensus_13454#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [GCTGCCGGGCCCTTCAAATGTCCCAAGTTAGCATTGTAGATGAGGCTGTTCGAGCTGGTCAAGCTGAAGGCAGCGATGTTATTGCAGCATCAGGTATTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAATCATCTCCGCCGCGGTAAACACTTTGCATACAACCAAACACCGCTTCCGAGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCACTGTCCAGACATTGTTTTTTGGCGTTAAATCTCCGTCATTTTGGCTGGCACATGAAACAGTGGTGCGTCCTTATTCAATATAAAAAAA]

[+] EMBL BI799901             [GCTGCCGGGCCCTTCAAATGTCCCAAGTTAGCATTGTAGATGAGGCTGTTCGAGCTGGTCAAGCTGAAGGCAGCGATGTTATTGCAGCATCAGGTATTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAATCATCTCCGCCGCGGTAAACACTTTGCATACAACCAAACACCGCTTCCGAGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCACTGTCCAGACATTGTTTTTTGGCGTTAAATCTCCGTCATTTTGGCTGGCACATGAAACAGTGGTGCGTCCTTATTCAATATAAAAAAA]


>consensus_13454#2 GCTGCCGGGCCCTTCAAATGTCCCAAGTTAGCATTGTAGATGAGGCTGTTCGAGCTGGTC AAGCTGAAGGCAGCGATGTTATTGCAGCATCAGGTATTTGGTGCTGGACTTACATGGGGT TCAGCTATTGTCAAATGGTGCTAATCATCTCCGCCGCGGTAAACACTTTGCATACAACCA AACACCGCTTCCGAGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGC CCTTTCCACTGTCCAGACATTGTTTTTTGGCGTTAAATCTCCGTCATTTTGGCTGGCACA TGAAACAGTGGTGCGTCCTTATTCAATATAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13454#0      AGCTCGCCCCCCACCACCCCCTCGCGCGCGGCCCCCACCCACCCCACCCTCGCAGACATC 60
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      ACCGCCGCCCACCGTTCCCATCGCCGCCGCCGTCCTCTCCCCCGCCCGCGCCTATATCAT 120
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CTTCTCCCCCCCACCCTCGCGTACAGCAACGCATGCCCCCCCTCCTCCCCTCCCCTCCCG 180
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CTCGCCGCCATTGACCGAGCGATCTGCTGCCTCGCTCGCGAACTCCTACCCCGCCCGAGC 240
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CCGAGCCCAGGCCGTGGCCGCCGCGAGATCTCCGGCTGCTTTTCAGGTATGGTCGCCGCC 300
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      TCCGGCCTCGCGCCGCCGCGGCTGGCGGTCTCCTGCCCGCGTGCAGGCGGGGCGCGGCTG 360
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      AGGCGGACACCACCGGGTTGGCTTCCTCCGATCCGCTCCCGTGGCGTTGGCGGGGCCCGC 420
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      GGCCGCGCAGCTCCGGTGCTGCGCCTCCACCGTCGACGACGGCGTCGTCTCCGCCGCGGC 480
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      GGCCCCCAAGCCCCGCCTCCCCAGGGTCGTCGGTATGGGTTCAAAACTCATTGGATGCGG 540
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      ATCGGCCACTCCATCGCTTAGCGTTTCAAATGATGACCTTTCTAAAATAGTTGAAACATC 600
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      AGATGAATGGATCGCAGCACGGACTGGGATTCGGAATAGGCGAGTTCTTTCAGGAAATGA 660
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      GACACTGCGCGAGCTTTCAGTACAGGCAGCAAAAAAAGCTCTTGAGATGGCTCAAGTAAA 720
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      TGCTGATGATGTTGACCTTGTTCTCCTTTGCACGTCTACCCCAGATGATCTGTTTGGAGG 780
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      TGCTGCTCAGGTGCTGGCGGAGGTGGGATGCGCAAATGCATTTGGCTTTGATATCACTGC 840
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      TGCATGTAGTGGGTTTATTATTGGTTTAATTACGGCTACTCGTTTTATCAAAGGTGGAGG 900
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CATCCGGAATATTCTAGTAATTGGTGCCGATGCTCTTTCACAATTTGTGGATTGGACAGA 960
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CAGAGGTACATGCATCCTCTTTGGTGATGCTGCTGGTGCTGTTTTGGTTCAGGCATGCAG 1020
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      TGCTGATGAAGATGGCTTGCTAGGTTTTTGCGTTCAAAGTGATGGCAACGGACAAAAGCA 1080
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CTTAAATTGTGTCTCGTCGCATGTTGAGTCTATCCTGTCGAAGACCAATGGTGTCCCTAG 1140
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CTTCCCACCTAAAAAGGCAACCTTCTCCAACATTGAAATGAATGGAAAGGAGGTTTTTCG 1200
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------------
                                                                                   

consensus_13454#0      CTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACC 1260
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      ------------------------------------------------------TTTACC 6
                                                                                   

consensus_13454#0      TGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGC 1320
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      TGCTTCCAGAATTGATTGGTGGTTGCTGCATCAAGCTAATCAGCGGATTATTGATGCTGC 66
                                                                                   

consensus_13454#0      TGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAA 1380
consensus_13454#2      --------------------------------------------------GCTGCCGGGC 10
consensus_13454#1      TGCCAGTAGGTTGGATATCCCATCTGACAAAGTTATTTCAAATCTTGCTAATTACGGAAA 126
                                                                           * * *   

consensus_13454#0      CACCAGTGCGGCCTCAATTC-CATTAGCATTAGATGAGGCTGTTCGAGCTGG-CAAGGTG 1438
consensus_13454#2      CCTTCAAATGTCCCAAGTTAGCATTG----TAGATGAGGCTGTTCGAGCTGGTCAAGCTG 66
consensus_13454#1      CACCAGTGCGGCCTCAATTC-CATTAGCATTAGATGAGGCTGTTCGAGCTGG-CAAGGTG 184
                       *        * **  * **  ****     ********************** **** **

consensus_13454#0      AAGGCAGGCGATGTTATTGCAGCATCAGGT-TTTGGTGCTGGACTTACATGGGGTTCAGC 1497
consensus_13454#2      AAGGCAG-CGATGTTATTGCAGCATCAGGTATTTGGTGCTGGACTTACATGGGGTTCAGC 125
consensus_13454#1      AAGGCAGGCGATGTTATTGCAGCATCAGGT-TTTGGTGCAGGACTTACATGGGGTTCAGC 243
                       ******* ********************** ******** ********************

consensus_13454#0      TATTGTCAAATGGTGCTAATCAT-TCCGC-GCGGTAAACA-TTTGCA-ACAACCAAACAC 1553
consensus_13454#2      TATTGTCAAATGGTGCTAATCATCTCCGCCGCGGTAAACACTTTGCATACAACCAAACAC 185
consensus_13454#1      TATTGTCAAATGGTGCTAAACAT-TCCGC-GCGGTAAACA-TTTGCA-ACAACCAAACAC 299
                       ******************* *** ***** ********** ****** ************

consensus_13454#0      CG-TTCCGAGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTT 1612
consensus_13454#2      CGCTTCCGAGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTT 245
consensus_13454#1      CG-TTCAAAAAAATCAGGTACGTGGCCTAGGTAAAAGTCTTCCAGGGTCATTTGCCCTTT 358
                       ** ***  * *  *** ***************  **************************

consensus_13454#0      CC-CTGTCC-GACATTGTTTTTTGG-GTTAAATCTCCGTCATTTTG-CTTGCACATGAAA 1668
consensus_13454#2      CCACTGTCCAGACATTGTTTTTTGGCGTTAAATCTCCGTCATTTTGGCTGGCACATGAAA 305
consensus_13454#1      CC-CTGTCC-GACATGGGGGAGAGGGTCAAGAGCTCC----CCCTG--GAGGAGGGGGGA 410
                       ** ****** ***** *      **    * * ****       **    * *   *  *

consensus_13454#0      CAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGTTACACAGCTTGGCTGTCAGTGT 1728
consensus_13454#2      CAGTGGTGCGTCCTTATTCA-ATATAAAAAAA---------------------------- 336
consensus_13454#1      GGGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 470
                         * * *   **  * *     * *                                   

consensus_13454#0      GGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGATGCGTAGAAATATT 1788
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 530
                                                                                   

consensus_13454#0      TAAATCCGGGATTGAACTTAGCTGGCCTTGAGGGAATATTAATATTGTAAAGTTACTGGG 1848
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      TCTCTCTCTCTCTCTCTCTCTCTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 590
                                                                                   

consensus_13454#0      CCTTCTTAACAGGGTGCGCCCTGAAAAATTTTAATTGAACTGTGGTCAGCGTTCTGGCAC 1908
consensus_13454#2      ------------------------------------------------------------
consensus_13454#1      TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTGCTCTCT------------ 638
                                                                                   

consensus_13454#0      TGATAATAAGCATGTAAGAAAGTGATGGATGTTTGTTGTAGGTCAATCATGAAAGAATG 1967
consensus_13454#2      -----------------------------------------------------------
consensus_13454#1      -----------------------------------------------------------
                                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)