These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2115 fasta sequence [CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAAGTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG-TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA-GAAGACTGATGATGATA-TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTGGAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGGCCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAATTGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATCTTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTACATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTACCAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTACAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGGATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTAAAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT-CAGCTCCTG-CAGAGCCT-GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA-GTGAGAACAGTCTGGTTTTTGAATCAC-TTCCA--CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT-CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT-TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA-CAGGATACAACAATT-TCAATTT-CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTAAGCTTCTGGTGAAGA] [+] EMBL AK102025 [CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAAGTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA GAAGACTGATGATGATA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTGGAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGGCCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAATTGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATCTTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTACATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTACCAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTACAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGGATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTAAAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTAAGCTTCTGGTGAAGA] [+] EMBL CB654474 [ GCGGCCCCTCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA GAAGACTGATGATGATA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATAT ] [+] EMBL CB629557 [ CTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCTCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA GAAGACTGATGATGATA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGAC ] [+] EMBL C28286 [ TCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAGTTTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGAGGAAGACTTATGATGATANTTCCCATGC ] [+] EMBL D42345 [ TACCTCCAGATTCTGGAGCTGGAGGAGCCGATCCCCCGGATGAAGGTGATTCACGTTTCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAACCTCAAGGA GAAGACTGATGATGCTA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATCCTCAGCTGAACAGGTT ] [-] EMBL CB654475 [ CTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTAAAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTTTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCAAGGGTAGGATACACTTTTCTAAGCTTCTG ] [-] EMBL CB629558 [ TCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGACATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTTTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATA ] [+] EMBL CB096936 [ GGATACAT AACTCAAAATGGGGTCCACTTTGACATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATA ] [+] EMBL BM419311 [ ccaAATTCATGCAGCTCCTGCCAGAGCCTNGA CAAATTGATTTGTCATGGCCATTGTCGCTTCAAAGAGTGT GCAGAAATTACTTCATGGTGATAAAGGTATGAACTACACTAATTCCA GTGAGAACAGTCTGGTTTTTGAATCACGGTCCANTCTGGCAATGGAGTGGCTGAGGACAAATGCCCGACGAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCCAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAATGTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCCGGCGGTTACCAGGATAC ACAATTGTCAATTTCCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTNTCATGGCTCC TTTTGCCACTAATCCGTATTCTNTACCCAG AAACTTCAAGGCCCATNACAACAAGTAATAAATTGAATACAGGAATAAGATGGCCCCCATCATGAATAGGAGACACTTTTCTAAaaaa ] [+] EMBL BI809003 [ AGAAATTACTTCATGGTGATAAAGGTATGAACAACAC AATTCCACGTGAGAACAGTCTGGTTTTTGAATCAC TTCCA CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACCAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTC TTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTC CGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATAC AC ATT TCAATTT CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTC ATGCCCATTAC ACAAGTAATAAATTGAATACATGAATAAaaaaaaaa ] consensusID : consensus_13456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [CCCGCATCTTCTGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAAGGTNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCTTCTTGGA-ACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGAT-CCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU082648 [CCCGCATCTTCTGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAAGGTNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCTTCTTGGA ACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGAT CCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BM420424 [ TCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCNTCTTGGAGACGATATACACTTAGAAGTTCAAA TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTAC ACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATAAAAAAAAAA ] consensusID : consensus_13456#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [GGGTTACTGGGCTCCCTGGCAATGCTGCAGTTGGGTGGATGGTGTTGAGATTGGTGCAAAGGAAATGGATACTTCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATTGACAGCTGGAGCACAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACACAGGGCAGGTTACAAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGGCTGACCAGGCAGCGAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCTCCTTTTTGCCAACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGTGCAAATCAAAAAAAAA] [+] EMBL BM420407 [GGGTTACTGGGCTCCCTGGCAATGCTGCAGTTGGGTGGATGGTGTTGAGATTGGTGCAAAGGAAATGGATACTTCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATTGACAGCTGGAGCACAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACACAGGGCAGGTTACAAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGGCTGACCAGGCAGCGAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCTCCTTTTTGCCAACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGTGCAAATCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13456#0 CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAA 60 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 GTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGC 120 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 ATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCT 180 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCT 240 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACG 300 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 AGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCA 360 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 ACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGC 420 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCA 480 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCAC 540 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 ATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAGT 600 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGAGAAGACTGATGATGATATTC 660 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAAC 720 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 AGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGG 780 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTG 840 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 GAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGG 900 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAAT 960 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATC 1020 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTA 1080 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTAC 1140 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTA 1200 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 CAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGG 1260 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 ATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTA 1320 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 AAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAA 1380 consensus_13456#1 ------------------------------------------------------------ consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 AGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTC 1440 consensus_13456#1 -------------------------------------------------CCCGCATCTTC 11 consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCC-AAACCAA 1499 consensus_13456#1 TGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCCAAACCAA 71 consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGAT 1559 consensus_13456#1 TCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGAT 131 consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAA-GG 1618 consensus_13456#1 TTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAAGG 191 consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 TATGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAAT 1678 consensus_13456#1 TNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAAT 251 consensus_13456#2 ------------------------------------------------------------ consensus_13456#0 GGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGG--TT 1736 consensus_13456#1 GGAGTGGCTGAGGACAAATGCCCGACAAA-CCGATCAACTTCTTTTCAGGTCCTGG--TT 308 consensus_13456#2 ----------------------------------------------GGGTTACTGGGCTC 14 * * **** * consensus_13456#0 ACTGGCTCC-CTGCATCTCGTTGGTGATGTGTTGAGATTGGTC---AAGAAATG-ATACT 1791 consensus_13456#1 ACTGGCTCC-CTGCATCTCGTTGGTGATGTGTTGAGATTGGTC---AAGAAATG-ATACT 363 consensus_13456#2 CCTGGCAATGCTGCAGTTGGGTGG-ATGGTGTTGAGATTGGTGCAAAGGAAATGGATACT 73 ***** ***** * * *** ************** * ****** ***** consensus_13456#0 TC---TTCTTGGAACGATATACACTTA----GAAGTTC----AAATTGAC-GCTGAGCCA 1839 consensus_13456#1 TC---TTCTTGGAACGATATACACTTA----GAAGTTC----AAATTGAC-GCTGAGCCA 411 consensus_13456#2 TCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATTGACAGCTGGAGCA 133 ** ****************** * **** * ******** **** ** consensus_13456#0 ---ATTTCGC----GGTTTAC-GTTTGAGATCCCC-TGACGGCAACC--GGGC-GGTTAC 1887 consensus_13456#1 ---ATTTCGC----GGTTTAC-GTTTGAGATCCC--TGACGGCAACC--GGGC-GGTTAC 458 consensus_13456#2 CAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACACAGGGCAGGTTAC 193 ** * ** ******* ************ ********** **** ****** consensus_13456#0 A-GGATACAA-CAATTTC---AATTTCAGGTGTTTTGGATTCTATG-CTGACCAGGCAGC 1941 consensus_13456#1 A-GGATACAA-CAATTTC---AATTTCAGGTGTTTTGGATTCTATG-CTGACCAGGCAGC 512 consensus_13456#2 AAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGGCTGACCAGGCAGC 253 * ******** *** ** ************************* ************* consensus_13456#0 GAGCATATCGC--GTATACTCTTCTTG-TTATGT--GTTTCATGGCTCCTTTTTGCCA-C 1995 consensus_13456#1 GAGCATATCGC--GTATACTCTTCTTG-TTATGT--GTTTCATGGCTCCTTTTTGCCA-C 566 consensus_13456#2 GAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCTCCTTTTTGCCAAC 313 ********* ************** ***** ********************** * consensus_13456#0 TAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAAT 2055 consensus_13456#1 TAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAAT 626 consensus_13456#2 TAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAAT 373 ************************************************************ consensus_13456#0 ACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTAAGCTTCTGGTGAAGA 2115 consensus_13456#1 ACATGAATAAGATGGTGGCAATCATGAATAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 686 consensus_13456#2 ACATGAATAAGATG-TGCAAATCAAAAAAAAA---------------------------- 404 ************** ** ***** ** * consensus_13456#0 ------- consensus_13456#1 AAAAAAA 693 consensus_13456#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||