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Oryza sativa
cluster # 13456 cluster # 13456       Sequences # 13       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13456#0 length = 2115 sequences # 10  
 consensus_13456#1 length = 693 sequences # 2  
consensus_13456#2 length = 404 sequences # 1  
consensusID : consensus_13456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2115
fasta sequence 
                              [CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAAGTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG-TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA-GAAGACTGATGATGATA-TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTGGAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGGCCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAATTGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATCTTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTACATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTACCAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTACAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGGATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTAAAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT-CAGCTCCTG-CAGAGCCT-GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA-GTGAGAACAGTCTGGTTTTTGAATCAC-TTCCA--CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT-CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT-TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA-CAGGATACAACAATT-TCAATTT-CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTAAGCTTCTGGTGAAGA]

[+] EMBL AK102025             [CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAAGTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA GAAGACTGATGATGATA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTGGAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGGCCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAATTGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATCTTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTACATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTACCAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTACAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGGATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTAAAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA  CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTAAGCTTCTGGTGAAGA]
[+] EMBL CB654474             [                                                                              GCGGCCCCTCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA GAAGACTGATGATGATA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB629557             [                                                                                       CTCGCCTGAGCTTGCGCTGCACCTGCACGCGGCATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCTCCGTCCCCGTCCCCGTCCCCGCCCGCCTCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCTCCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACGAGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGA GAAGACTGATGATGATA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAACAGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGGTTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C28286               [                                                                                                                                                                                                                                                                                                                                TCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCAACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGCCGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAGTTTTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGAGGAAGACTTATGATGATANTTCCCATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL D42345               [                                                                                                                                                                                                                                                                                                                                                                                                        TACCTCCAGATTCTGGAGCTGGAGGAGCCGATCCCCCGGATGAAGGTGATTCACGTTTCCGGGACCAAAGGAAAGGGTTCAACATGCACATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCACATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAG TTTTTGAAATACTTCTGGTGGTGCTGGAATAACCTCAAGGA GAAGACTGATGATGCTA TTCCCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATCCTCAGCTGAACAGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB654475             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTAAAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA  CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTTTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCAAGGGTAGGATACACTTTTCTAAGCTTCTG       ]
[-] EMBL CB629558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTCAGTCTTGTGGCAACTCTCAAAAGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTCTGGATACATCAACTCAAAATGGGGTCCACTTTGACATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA  CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTTTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATA                         ]
[+] EMBL CB096936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGATACAT AACTCAAAATGGGGTCCACTTTGACATGGCTCTTTTTGTGCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCAT CAGCTCCTG CAGAGCCT GAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTATGAACAACACAAATTCCA GTGAGAACAGTCTGGTTTTTGAATCAC TTCCA  CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATACAACAATT TCAATTT CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATA                                                           ]
[+] EMBL BM419311             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccaAATTCATGCAGCTCCTGCCAGAGCCTNGA CAAATTGATTTGTCATGGCCATTGTCGCTTCAAAGAGTGT GCAGAAATTACTTCATGGTGATAAAGGTATGAACTACACTAATTCCA GTGAGAACAGTCTGGTTTTTGAATCACGGTCCANTCTGGCAATGGAGTGGCTGAGGACAAATGCCCGACGAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCCAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAATGTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCCGGCGGTTACCAGGATAC ACAATTGTCAATTTCCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTNTCATGGCTCC TTTTGCCACTAATCCGTATTCTNTACCCAG AAACTTCAAGGCCCATNACAACAAGTAATAAATTGAATACAGGAATAAGATGGCCCCCATCATGAATAGGAGACACTTTTCTAAaaaa          ]
[+] EMBL BI809003             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGAAATTACTTCATGGTGATAAAGGTATGAACAACAC AATTCCACGTGAGAACAGTCTGGTTTTTGAATCAC TTCCA  CTGGCAATGGAGTGGCTGAGGACAAATGCCCGACCAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTC TTGGTGATGTGTTGAGATTGGT CAAGAAATGATACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAAT TGACGCTGAGCCAATTTC CGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTA CAGGATAC AC ATT TCAATTT CAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTC ATGCCCATTAC ACAAGTAATAAATTGAATACATGAATAAaaaaaaaa                                          ]




>consensus_13456#0
CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAA
GTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGC
ATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCT
CCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCT
CCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACG
AGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCA
ACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGC
CGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCA
CATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCAC
ATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAGT
TTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGAGAAGACTGATGATGATATTC
CCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAAC
AGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGG
TTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTG
GAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGG
CCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAAT
TGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATC
TTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTA
CATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTAC
CAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTA
CAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGG
ATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTA
AAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAA
AGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTC
TGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCAAACCAAT
CACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGATT
TGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAGGTA
TGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAATGG
AGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTG
GCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCTTCTTGG
AACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAG
ATCCCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGG
ATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATG
GCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACA
AGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTA
AGCTTCTGGTGAAGA

consensusID : consensus_13456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 693
fasta sequence 
                              [CCCGCATCTTCTGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAAGGTNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCTTCTTGGA-ACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGAT-CCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU082648             [CCCGCATCTTCTGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAAGGTNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAACCGATCAACTTCTTTTCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCTTCTTGGA ACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGAT CCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM420424             [                                                                                                                                                                                                                                                                                                       TCAGGTCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGATACTTCNTCTTGGAGACGATATACACTTAGAAGTTCAAA TGACGCTGAGCCAATTTCGCGGTTTACGTTTGAGATCCCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTCAGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTATGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTAC ACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGATAAAAAAAAAA                       ]




>consensus_13456#1
CCCGCATCTTCTGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGT
GCCCAAACCAATCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTG
AGCAAATTGATTTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATG
GTGATAAAAGGTNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTT
CCACTGGCAATGGAGTGGCTGAGGACAAATGCCCGACAAACCGATCAACTTCTTTTCAGG
TCCTGGTTACTGGCTCCCTGCATCTCGTTGGTGATGTGTTGAGATTGGTCAAGAAATGAT
ACTTCTTCTTGGAACGATATACACTTAGAAGTTCAAATTGACGCTGAGCCAATTTCGCGG
TTTACGTTTGAGATCCCTGACGGCAACCGGGCGGTTACAGGATACAACAATTTCAATTTC
AGGTGTTTTGGATTCTATGCTGACCAGGCAGCGAGCATATCGCGTATACTCTTCTTGTTA
TGTGTTTCATGGCTCCTTTTTGCCACTAATCCGTATTCTTTACCCAGAAAACTTCAATGC
CCATTACAACAAGTAATAAATTGAATACATGAATAAGATGGTGGCAATCATGAATAGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_13456#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence 
                              [GGGTTACTGGGCTCCCTGGCAATGCTGCAGTTGGGTGGATGGTGTTGAGATTGGTGCAAAGGAAATGGATACTTCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATTGACAGCTGGAGCACAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACACAGGGCAGGTTACAAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGGCTGACCAGGCAGCGAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCTCCTTTTTGCCAACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGTGCAAATCAAAAAAAAA]

[+] EMBL BM420407             [GGGTTACTGGGCTCCCTGGCAATGCTGCAGTTGGGTGGATGGTGTTGAGATTGGTGCAAAGGAAATGGATACTTCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATTGACAGCTGGAGCACAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACACAGGGCAGGTTACAAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGGCTGACCAGGCAGCGAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCTCCTTTTTGCCAACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAATACATGAATAAGATGTGCAAATCAAAAAAAAA]




>consensus_13456#2
GGGTTACTGGGCTCCCTGGCAATGCTGCAGTTGGGTGGATGGTGTTGAGATTGGTGCAAA
GGAAATGGATACTTCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATT
GACAGCTGGAGCACAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACA
CAGGGCAGGTTACAAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGG
CTGACCAGGCAGCGAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCT
CCTTTTTGCCAACTAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAG
TAATAAATTGAATACATGAATAAGATGTGCAAATCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13456#0      CCACGGCGGCGGCGGCGCCATCACCAACCCACACCCACACCTACTACTACGACGACACAA 60
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      GTAGTGGTCGTCGAATCCGCGGCGGCGCTCGCCTGAGCTTGCGCTGCACCTGCACGCGGC 120
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      ATATGCCTCACCGCCCTCACCTGGCTCAGCTCCGCCGCCTCCTCCTCCTGCCTTGCTCCT 180
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CCGTCCCCGTCCCCGTCCCCGCCCGCCGCCTCTCCTCCCCTCGCGCCATGGCCTCCTCCT 240
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CCGTCTCCGCCGCCGCCGCCGCCGCGCAGGCAGGTGGTGCTGTGGCGGCAGCGGAGTACG 300
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      AGGACGTGATGGGGCGGCTCTCCTCGCTCATCACGCAGAAGGTGCGGGCGCACAGCGGCA 360
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      ACCGGGGAAACCAGTGGGACCTCATGGCGCATTACCTCCAGATTCTGGAGCTGGAGGAGC 420
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CGATCGCGCGGATGAAGGTGATTCACGTTGCCGGGACCAAAGGAAAGGGTTCAACATGCA 480
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CATTCACAGAGGCAATCCTGCGATCATGTGGTTTCAGCACAGGGCTGTTCACCTCACCAC 540
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      ATTTGATGGATGTCAGGGAGCGATTCCGGCTAAATGGGGTGGATATTTCCGAAGAAAAGT 600
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TTTTGAAATACTTCTGGTGGTGCTGGAATAAGCTCAAGGAGAAGACTGATGATGATATTC 660
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CCATGCCAACCTACTTCAGATTCCTTGCATTGTTAGCATTCAAGATATTCTCAGCTGAAC 720
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      AGGTTGATGTTGCTGTTCTCGAGGTTGGCCTTGGAGGGAAGTTTGATGCAACTAATGTGG 780
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TTGAAGCACCTGTGGTTTGTGGAATAGCTTCCCTTGGATACGACCATATGGAAATTCTTG 840
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      GAAACACACTTGGAGAAATTGCTGGTGAGAAGGCAGGGATTTTCAAGAAGGGAGTTCCGG 900
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CCTACACTGCTCCACAGCCAGAAGAGGCAATGATTGCTCTGAAACAAAGGGCTTCAGAAT 960
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TGGGTGTTTCACTCCAAGTTGCACATCCTTTGGAACCCCATCAATTAAAGGATCAACATC 1020
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TTGGACTGCGTGGTGAACACCAATATGTAAATGCTGGCCTTGCAGTTGCATTGGCTAGTA 1080
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CATGGCTTGAGAAGCAAGGACATGTGGAAAGAATACCACTGAACCGAACTGACCCGTTAC 1140
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CAGATCAGTTTATTAGTGGGCTGTCAAATGCCTCTTTGCAAGGCCGAGCGCAGATCATTA 1200
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      CAGATTCACAAGTAAACTCAGGAGAGGAAGATAAAGACTGTTCTTTGGTTTTCTATTTGG 1260
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      ATGGGGCTCACAGTCCTGAAAGTATGGAAATTTGTGCTAGATGGTTTAGCCATGTCACTA 1320
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      AAGAGGATAGGACAGTACCATCTTCCATGGTGCAGTCTCAGTCTTGTGGCAACTCTCAAA 1380
consensus_13456#1      ------------------------------------------------------------
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      AGATTCTTCTATTCAATTGCATGTCCGTGAGGGATCCTATGAGGTTGCTTCCGCATCTTC 1440
consensus_13456#1      -------------------------------------------------CCCGCATCTTC 11
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TGGATACATCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCC-AAACCAA 1499
consensus_13456#1      TGGATACTTCAACTCAAAATGGGGTCCACTTTGAGATGGCTCTTTTTGTGCCCAAACCAA 71
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGAT 1559
consensus_13456#1      TCACAATACAACAAGCTTGGTACCAATTCATCAGCTCCTGCAGAGCCTGAGCAAATTGAT 131
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAA-GG 1618
consensus_13456#1      TTGTCATGGCAATTGTCGCTTCAAAGAGTGTGGCAGAAATTACTTCATGGTGATAAAAGG 191
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      TATGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAAT 1678
consensus_13456#1      TNTGAACAACACAAATTCCAGTGAGAACAGTCTGGTTTTTGAATCACTTCCACTGGCAAT 251
consensus_13456#2      ------------------------------------------------------------
                                                                                   

consensus_13456#0      GGAGTGGCTGAGGACAAATGCCCGACAAAACCGATCAACTTCTTTTCAGGTCCTGG--TT 1736
consensus_13456#1      GGAGTGGCTGAGGACAAATGCCCGACAAA-CCGATCAACTTCTTTTCAGGTCCTGG--TT 308
consensus_13456#2      ----------------------------------------------GGGTTACTGGGCTC 14
                                                                       * * ****  * 

consensus_13456#0      ACTGGCTCC-CTGCATCTCGTTGGTGATGTGTTGAGATTGGTC---AAGAAATG-ATACT 1791
consensus_13456#1      ACTGGCTCC-CTGCATCTCGTTGGTGATGTGTTGAGATTGGTC---AAGAAATG-ATACT 363
consensus_13456#2      CCTGGCAATGCTGCAGTTGGGTGG-ATGGTGTTGAGATTGGTGCAAAGGAAATGGATACT 73
                        *****    *****  * * ***    **************    * ****** *****

consensus_13456#0      TC---TTCTTGGAACGATATACACTTA----GAAGTTC----AAATTGAC-GCTGAGCCA 1839
consensus_13456#1      TC---TTCTTGGAACGATATACACTTA----GAAGTTC----AAATTGAC-GCTGAGCCA 411
consensus_13456#2      TCGTGTTCTTGGAACGATATACAACTGTGAGGAAGGTGTGCAAAATTGACAGCTGGAGCA 133
                       **   ******************  *     **** *     ******** ****   **

consensus_13456#0      ---ATTTCGC----GGTTTAC-GTTTGAGATCCCC-TGACGGCAACC--GGGC-GGTTAC 1887
consensus_13456#1      ---ATTTCGC----GGTTTAC-GTTTGAGATCCC--TGACGGCAACC--GGGC-GGTTAC 458
consensus_13456#2      CAAATGTTGCAGCAGGTTTACAGTTTGAGATCCCACTGACGGCAACACAGGGCAGGTTAC 193
                          ** * **    ******* ************  **********   **** ******

consensus_13456#0      A-GGATACAA-CAATTTC---AATTTCAGGTGTTTTGGATTCTATG-CTGACCAGGCAGC 1941
consensus_13456#1      A-GGATACAA-CAATTTC---AATTTCAGGTGTTTTGGATTCTATG-CTGACCAGGCAGC 512
consensus_13456#2      AAGGATACAAACAAATTTGCAAATTTCAGGTGTTTTGGATTCTATGGCTGACCAGGCAGC 253
                       * ******** *** **    ************************* *************

consensus_13456#0      GAGCATATCGC--GTATACTCTTCTTG-TTATGT--GTTTCATGGCTCCTTTTTGCCA-C 1995
consensus_13456#1      GAGCATATCGC--GTATACTCTTCTTG-TTATGT--GTTTCATGGCTCCTTTTTGCCA-C 566
consensus_13456#2      GAGCATATCAGCAGTATACTCTTCTTGGTTATGGTGGTTTCATGGCTCCTTTTTGCCAAC 313
                       *********    ************** *****   ********************** *

consensus_13456#0      TAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAAT 2055
consensus_13456#1      TAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAAT 626
consensus_13456#2      TAATCCGTATTCTTTACCCAGAAAACTTCAATGCCCATTACAACAAGTAATAAATTGAAT 373
                       ************************************************************

consensus_13456#0      ACATGAATAAGATGGTGGCAATCATGAATAGGATACACTTTTCTAAGCTTCTGGTGAAGA 2115
consensus_13456#1      ACATGAATAAGATGGTGGCAATCATGAATAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 686
consensus_13456#2      ACATGAATAAGATG-TGCAAATCAAAAAAAAA---------------------------- 404
                       ************** **  *****  ** *                              

consensus_13456#0      -------
consensus_13456#1      AAAAAAA 693
consensus_13456#2      -------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)