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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1142 fasta sequence
[ACACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC-GGCAC-GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT-GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC-GAAGCCTGAAGAGCCGCACCACCCCG-AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT-GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC-ATCTACCCATGTACCATATATGCTTCATTAATTTATGTTTGAATTATGTTTCTAGTATTATATACAT-CAGTAAATAGTTATTTGCCTACAAAAAAA]
[+] EMBL AK070771 [ACACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC GGCAC GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCAC CCG GCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCC AAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC GAAGCCTGAAGAGCCGCACCACCCCG AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTT ]
[+] EMBL AK106214 [ CACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC GGCAC GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC GAAGCCTGAAGAGCCGCACCACCCCG AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACC ]
[+] EMBL AK105918 [ CACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC GGCAC GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC GAAGCCTGAAGAGCCGCACCACCCCG AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACC ]
[+] EMBL AU182462 [ ACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGCAGGCACAGGTGGCTCGAGGNNTTTTNCCCGCCGTACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCTAGCCCAAGCATGAGGAGCCGNCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGNACCGGAGCTTACCAAACCTGAGCTGCC ]
[+] EMBL AU182463 [ CCCCGTCGTNCCGGAGCTGCCNAAAGCCTGAAGAGCCGCACCACCCCGAAGGTGCCGGAGCATGAACANCCNCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCTATTCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTANAAANGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACCCATGTACCATATATGCTTCATTAATaaaaaaaaa ]
[+] EMBL BI803316 [ ACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTTCGATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATCTATCTACCCATGTACCATATATGCTTCATTAATTTATGTTTGAATTATGTTTCTAGTATTATATACATCCAGTAAATAGTTATTTGCCTACAAAAAA ]
[+] EMBL BI799984 [ ACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACCCATGTACCATATATGCTTCATTAATTTATGTTTGAATTATGTTTCTAGTATTATATAAAT CAGTAAATAGTTATTTGCCTACAAAAAAA]
consensusID : consensus_13462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 989 fasta sequence
[AGAGTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACCCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATAGCT]
[+] EMBL AK068696 [AGAGTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCATGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACCCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATAG ]
[+] EMBL AK106010 [ GTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACCCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATAGCT]
[+] EMBL AU095580 [ TAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACNCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACNCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCNGAAACACGA ]
consensusID : consensus_13462#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[GCTCACACTGAGATCCAGAGATAGAGATCAGAAAGACAGAAAAGTAGAAGCCATATTGAGAGTTTGAGACAGCATGATCTCCAAGAACACCATGGCTTCCTCGGTTCTCTTGCTTGTGGCGCTGCTGCTCTCGTGCAGCTCCATGAGCAGCGAGGCACGACGCCTGGAGGAGGCGTACCCGGCGCACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGCCGGAGGTGGCAAAGCACGAAGAACCACCGCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGGCGGAGCTGCTCAAGCACGAAGAAACACCGCCCACCCACACCCCGCCGTGGCGGAGCTTCCGAAGCCTGAAATGTCGCCGCCGCAACCCGCCGTGGCGGGGGTGCCGAAGCACAAAAAAAGGCGCTCCCTACCCCCCCTGGCGGAGTTCCGAAACTGGACTGCGCCCCACCCGCCGTGCCGGACTGCCCAGCACAAAAACCCCCCCCCCCCGTCTGGCGGACGCTGGTGGCGAATCCGACGTGCGTCCCCTGCCCGGCCGGA]
[+] EMBL CA755349 [GCTCACACTGAGATCCAGAGATAGAGATCAGAAAGACAGAAAAGTAGAAGCCATATTGAGAGTTTGAGACAGCATGATCTCCAAGAACACCATGGCTTCCTCGGTTCTCTTGCTTGTGGCGCTGCTGCTCTCGTGCAGCTCCATGAGCAGCGAGGCACGACGCCTGGAGGAGGCGTACCCGGCGCACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGCCGGAGGTGGCAAAGCACGAAGAACCACCGCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGGCGGAGCTGCTCAAGCACGAAGAAACACCGCCCACCCACACCCCGCCGTGGCGGAGCTTCCGAAGCCTGAAATGTCGCCGCCGCAACCCGCCGTGGCGGGGGTGCCGAAGCACAAAAAAAGGCGCTCCCTACCCCCCCTGGCGGAGTTCCGAAACTGGACTGCGCCCCACCCGCCGTGCCGGACTGCCCAGCACAAAAACCCCCCCCCCCCGTCTGGCGGACGCTGGTGGCGAATCCGACGTGCGTCCCCTGCCCGGCCGGA]
consensusID : consensus_13462#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[CCGCGTNCCGGAGCTTCCGAAGCCTGAANTGCCGCCGCCGCACCCCGCCGTNCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAAAAAAAAAAAAAAA]
[+] EMBL AU070894 [CCGCGTNCCGGAGCTTCCGAAGCCTGAANTGCCGCCGCCGCACCCCGCCGTNCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAAAAAAAAAAAAAAA]
consensusID : consensus_13462#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[NAGGGNTGCCTGAGTCTANTCGGCNGGNGGTGCCNCCGCACCCCGCCTGTGCCGGANCTGCCCANGNNTGAGGAGCCGCCGCTCCCCGTCNTGCNGGAGTTGCCCNAGCNCGAANAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCNGNNCTGAGCTGCCGCCACACCCCGTCGTGCCGGNGTTGCCAAAGCNCGANGAGCCNCCACNCCCCGCCGTCGTGCCGGAGTTGCCCAAGCACNAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCANNCACGAGGAGCCACCACACCCTGCCGTGCCGGNGCTGCCNCACCCAGCTGTGCCGGAGATACCGCNCCCNGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCNGGAGCTGCCNAAGCCGGAGGTGCCACNCGCCGCCGTGCCGGAGTTGCCCTANCCTGAGCTGCCGCCACACCCCGNCGTGGC]
[+] EMBL BE228395 [NAGGGNTGCCTGAGTCTANTCGGCNGGNGGTGCCNCCGCACCCCGCCTGTGCCGGANCTGCCCANGNNTGAGGAGCCGCCGCTCCCCGTCNTGCNGGAGTTGCCCNAGCNCGAANAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCNGNNCTGAGCTGCCGCCACACCCCGTCGTGCCGGNGTTGCCAAAGCNCGANGAGCCNCCACNCCCCGCCGTCGTGCCGGAGTTGCCCAAGCACNAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCANNCACGAGGAGCCACCACACCCTGCCGTGCCGGNGCTGCCNCACCCAGCTGTGCCGGAGATACCGCNCCCNGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCNGGAGCTGCCNAAGCCGGAGGTGCCACNCGCCGCCGTGCCGGAGTTGCCCTANCCTGAGCTGCCGCCACACCCCGNCGTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13462#1 AGAGTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGA 60
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 ------------------------------------------------------------
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 ACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCA 120
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 -------------------------------------ACACTAGCTCACACAGTGAGGTA 23
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 TGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGG 180
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 GCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCT 83
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 AGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAG 240
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 TCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGCGGCACGGTGGCTCG 143
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------GCTCACACTGAGATCCAGAGATAGAGATCAGAAAGACAGAAA 42
consensus_13462#1 AACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGC 300
consensus_13462#3 ---------------------CCGC-GTNCCGGAGCTTCCGAAGCCTGAANTGCCGCCGC 38
consensus_13462#0 AGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGC 203
consensus_13462#4 ---------------------NAGGGNTGCCTGAGTCTANTCGGCNGGNGGTGCCNCCGC 39
consensus_13462#2 AGTAGAAGCCATATTGAGAGTTTGAGACAGCATGATCTCCAAGAACACCATGGCTTCCTC 102
* ** ** *
consensus_13462#1 CGCACCCC-GCC-GTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCC 358
consensus_13462#3 CGCACCCC-GCC-GTNCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCC 96
consensus_13462#0 ---ACCCC-GCC-GTGCCGGAGCTGCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCC 258
consensus_13462#4 ---ACCCC-GCCTGTGCCGGANCTGCCCANGNNTGAGGAGCCGCCGCTCCCCGTCNTGCN 95
consensus_13462#2 GGTTCTCTTGCTTGTGGCGCTGCTGCTCTCGTGCAG-----CTCCATGAGCAGCGAGGCA 157
* * ** ** ** **** * * * ** * * **
consensus_13462#1 GGAGCTGCCAAAGCCCGAGG---TGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGA 415
consensus_13462#3 GGAGCTGCCAAAGCCCGAGG---TGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGA 153
consensus_13462#0 GGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGA 318
consensus_13462#4 GGAGTTGCCCNAGCNCGAANAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCNGNNCTGA 155
consensus_13462#2 CGA-CGCCTGGAGGAGGCGTACCCGGCGCACCCCGCCGTGCCGGAGCTTCCGAAGCCTGA 216
** * ** * * * ***** * *** ****** * ** **
consensus_13462#1 AGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCG- 474
consensus_13462#3 AGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCG- 212
consensus_13462#0 GCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGC 378
consensus_13462#4 GCTGCCGCCACACCCCGTCGTGCCGGNGTTGCCAAAGCNCGANGAGCCNCCACNCCCCGC 215
consensus_13462#2 GCTGCCGCCGCACCCCGTCGCGCCGGAGGTGGCAAAGCACGAAGAACCACCGCCACACCC 276
*** ** ********** ***** * ** * ** * *** ** ** ** * * *
consensus_13462#1 --TCGTGCCGGAGCTGCCGAAGCCCGAGG---TGCCTCACCCTGCTGT---GCCGGAGTT 526
consensus_13462#3 --TCGTGCCGGAGCTGCCGAAGCCCGAGG---TGCCTCACCCTGCTGT---GCCGGAGTT 264
consensus_13462#0 CGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTT 438
consensus_13462#4 CGTCGTGCCGGAGTTGCCCAAGCACNAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTT 275
consensus_13462#2 CGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGC---GGCGGAGCT 333
********** * ** **** * *** ***** * * * ***** *
consensus_13462#1 GCCGAAACACGAAGAGCCACC--------ACACCCCGTCGTGCCGGAGTTGCCAAA---- 574
consensus_13462#3 GCCGAAACACGAAGAGCCACC--------ACACCCCGTCGTGCCGGAGTTGCCAAA---- 312
consensus_13462#0 TCCCAAGCACGAGGAGCCACC--------ACACCCTGCCGTGCCGGAGCTGCCACACCCA 490
consensus_13462#4 TCCCANNCACGAGGAGCCACC--------ACACCCTGCCGTGCCGGNGCTGCCNCACCCA 327
consensus_13462#2 GCTCAAGCACGAAGAAACACCGCCCACCCACACCCCGCCGTGGCGGAGCTTCCGAAGCCT 393
* * ***** ** **** ****** * **** *** * * ** *
consensus_13462#1 -----GCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGC-- 627
consensus_13462#3 -----GCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGC-- 365
consensus_13462#0 GCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCA 550
consensus_13462#4 GCTGTGCCGGAGATACCGCNCCCNGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCA 387
consensus_13462#2 GAAATGTC---GCCGCCGCAACCCGCCGTGGCGGGGGTGCCGAAGCACAAAAAAAGGC-G 449
* * * ** * ** * *** *** * * ** **** * * **
consensus_13462#1 -ATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAG 686
consensus_13462#3 -ATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAG 424
consensus_13462#0 CACCCCGTCGTGCCGG---------AGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTG 601
consensus_13462#4 CACCCCGTCGTGCCNGG--------AGCTGCCNAAGCCGGAGGTGCCACNCGCCGCCGTG 439
consensus_13462#2 CTCCCTACCCCCCCTGGC------GGAGTTCCGAAACTGGACTGCGCCCCACCCGCCGTG 503
** * ** * ** ** * ** *** *
consensus_13462#1 CCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACG 746
consensus_13462#3 CCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACG 484
consensus_13462#0 CCGGAGTTG--CCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGC 659
consensus_13462#4 CCGGAGTTG--CCCTANCCTGAGCTGCCGCCACACCCCGNCGTGGC-------------- 483
consensus_13462#2 CCG-GACTG---CCCAGCACAAA-AACCCCCCCCCCCCGTC-TGGCG-GACGCTGGTGGC 556
** * * * * * * * * * *
consensus_13462#1 TGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTT 806
consensus_13462#3 TGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTT 544
consensus_13462#0 ACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCC-CAAGCACGAGGAGCCGCCGCAC 718
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 GAATCCGACGTGCGTCCCCTGCCCGGCCGGA----------------------------- 587
consensus_13462#1 TCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTT 866
consensus_13462#3 TCAGTGATGATCTAGCTAAAAAAAAAAAAAAA---------------------------- 576
consensus_13462#0 CCCGTCGTGCCGGAGCTGCCGAAGCCTGAAGAGCCGCACCACCCCGAGGTGCCGGAGCAT 778
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 TGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATT 926
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 GAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCG 838
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 TATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATA 986
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 GATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGT 898
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 GCT--------------------------------------------------------- 989
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 TTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGT 958
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 ------------------------------------------------------------
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 GAGTGATGCTTGATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGT 1018
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 ------------------------------------------------------------
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 GTGCTACGCTTATATCTATGCACACATCATCTACCCATGTACCATATATGCTTCATTAAT 1078
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 ------------------------------------------------------------
consensus_13462#3 ------------------------------------------------------------
consensus_13462#0 TTATGTTTGAATTATGTTTCTAGTATTATATACATCAGTAAATAGTTATTTGCCTACAAA 1138
consensus_13462#4 ------------------------------------------------------------
consensus_13462#2 ------------------------------------------------------------
consensus_13462#1 ----
consensus_13462#3 ----
consensus_13462#0 AAAA 1142
consensus_13462#4 ----
consensus_13462#2 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||