These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 3138 fasta sequence [GTGTGNATATGTCTCCTCTACAGAAGCAGTATTACAAATGGATTTTGGAGCGGAATTTCCAGAATCTCAACAAAGGAGTTCGTGGGAATCAGGTCTCGCTTTTAAATATCGTTGTTGAGTTGAAAAAGTGCTGCAACCACCCATTTTTATTTGAAAGTGCTGATCATGGTTATGGTGGAGATAGCATTGGTGATCGCAATAAAGTTGAACGCATTGTTATGAGTAGTGGGAAATTAGTGTTATTGGACAAGCTGTTGGTAAGACTGCGGGAGACTAATCATCGTGTGCTTATCTTCTCTCAGATGGTTAGGATGTTGGACATCCTTGCTGAGTATCTATCCCTCCGAGGATTCCAGTTTCAGAGGCTTGATGGCAGTACGAGAGCAGATCTTCGTCACCAGGCCATGGAGCATTTTAATGCTCCTGGAAGTGATGACTTCTGTTTTCTTCTGTCTACACGTGCTGGTGGGCTTGGTATTAATCTTGCAACAGCAGATACCGTGATCATTTTTGATTCAGACTGGAATCCGCAAAATGATTTACAGGCAATGAGTAGGGCACACAGGATTGGGCAACAAGAAACTGTTAACATATATCG-TTTCGTGACATGCAAAAGTGTTGAAGAGGATATATTGGAACGTGCAAAGAAAAAAATGGTTCTTGATCACCTAGTGATTCAGAAGCTAAATGCTGAGGGCAGGCTCGAGAAGAAAGAATCAAAAAAAGGTGGTTCCATGTTTGACAAGAATGAACTTTCAGCGATATTGAGATTTGGAGCAGAAGAGTTATTCAAAGAAGATAAGACTGATGAAGAGACCAAGAAGAAGCTTGAAAGCATGGACATTGATGAAATTCTCGAGAGAGCTGAGAAAGTTGAAACAAAGGGTGGTGAAGGGGAGGAAGGAAATGAACTTCTTAGTGCATTCAAGGTTGCCAACTTTTCTAGTGGTGAGGATGATGCCACATTCTGGAGCAGATTAATTCAACCAGATGCTTCAGATATGGTTGAGGAGACTTTAGCACCTCGTGCTGCAAGAAATAAGAAGAGCTATGTTGAAGATCACCAACTTGATAAGAATAGCAACAGGAAAAGGCGAGGAATCGATGCACAAGAAAAGCCAAGGAGGCGTTCTAGCAGAACAATGGACACAGCTGTGTCATTACCACTCATAGATGGTTCAGCACATCAAGTACGAGAATGGTCATTTGGAAATTTGTCAAAGAAAGATGCTACCCGATTTGTTCGAGCGGTTAAAAAATTTGGAAACCCAAGCCAAATTGGGTTAATCGTGGATGATGTTGGTGGTGCAATAGCAAAGTCTTCGGTTGATCAACAGCTTGAGCTGTTTACTCTACTCATTGAGGGTTGTCAAGATGCTGTTAAAAATAATATGGATGCCAAGGGCACAGTGTTGGATTTTTTTGGTGTAGCAGTTAAGGCGCATGAGTTGATAGCCCGTGTGGAAGAGCTACAGTTCCTGGCAAGGCGCATTGCACGTTACAAAGATCCAGTTAGACAATACCGGATCCAGGCACCTTACAAAAAGCCACAGTGGTCAGCAAGCTGTGGTTGGACTGAAACTGATGATGCAAGATTGATGGTTGGAATTCATTGGTATGGCTATGGAAATTGGGAGAAGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTGCACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATCGTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCAAGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCAATGGTGGAGCTCGTTCATTAAGAGGCCGGCAAAAAGACACAAAAATAAAAGAAGATAATAATTCAATTAAAGATGACTTTAAGAAACGCAAGGTGGTGGAACCTGAAGCAAGGGAAGAAGGTGAAATTTCAGAATCTGAAGCAGAGACTAAATATCGTCAGGACAAGGAAGAAAAGTGGCTGGAATGGTGTTCTGAAGTTTTGGATGACGAGCAGGAGATATTAAAGCGGCTGGATAGGCTTCAGAATACTAGTGTAAATCTGCCAAAGGAAAAGGTTCTTTCAAGAATTCGGAAATACCTCCAGATAATTGGTAATAAAATTGGAGAGATCGTTGATCAACATAGTGAATCATATAAGCAATCACGTATGGCAATGAGGTTGTGGAACTATGTGGCAAACTTTTCAAGTATGTCCGGGGAGCAATTGCACGACCTCTATTTAAAACTTAGTCAGGACCAAATGGAAGCTGGAGTAGGTCCGTCACATGGTGGGAATTTTGCATCAGTCCCTCCCAACAGGGGGCCTAAATCAAATCAGCTCCATCCTTCCAGAAACCAAAGGTCAACAAGGTCTGTCCAGTACGTCTCTGAGTCTTTCAACAATGGTGAAAACACTGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCTCCAAGGAAATATCAGCTT-CTAGCATGCCGCACATGT--AAAAATGGGGGAAGACCGTTCAATT-GAAATTCTT-TTTGAAGAAAAAAAA--ATAATGAAGTGCTGGAACCTGATGTGGACCACA-GTTTTGAATCCGAGTCTAAAAGAAATGCCA-GGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACAT-TGAAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCA-GTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTGCCCAAAAAAAA] [-] EMBL CB663415 [GTGTGNATATGTCTCCTCTACAGAAGCAGTATTACAAATGGATTTTGGAGCGGAATTTCCAGAATCTCAACAAAGGAGTTCGTGGGAATCAGGTCTCGCTTTTAAATATCGTTGTTGAGTTGAAAAAGTGCTGCAACCACCCATTTTTATTTGAAAGTGCTGATCATGGTTATGGTGGAGATAGCATTGGTGATCGCAATAAAGTTGAACGCATTGTTATGAGTAGTGGGAAATTAGTGTTATTGGACAAGCTGTTGGTAAGACTGCGGGAGACTAATCATCGTGTGCTTATCTTCTCTCAGATGGTTAGGATGTTGGACATCCTTGCTGAGTATCTATCCCTCCGAGGATTCCAGTTTCAGAGGCTTGATGGCAGTACGAGAGCAGATCTTCGTCACCAGGCCATGGAGCATTTTAATGCTCCTGGAAGTGATGACTTCTGTTTTCTTCTGTCTACACGTGCTGGTGGGCTTGGTATTAATCTTGCAACAGCAGATACCGTGATCATTTTTGATTCAGACTGGAATCCGCAAAATGATTTACAGGCAATGAGTAGGGCACACAGGATTGGGCAACAAGAAACTGTTAACATATATCG TTTCGTGACATGCAAAAGTGTTGAAGAGGATATATTGGAACGTGCAAAGAAAAAAATGGTTCTTGATCACCTAGTGATTCAGAAGCTAAATGCTGAGGGCAGGCTCGAGAAGAAAGAATCAAAAAAAGGTGGTTCCATGTTTGACAAGAATGAACTTTCAGCGATATTGAGATTTGGAGCAGAAGAGTTATTCAAAGAAGATAAGACTGATGAAGAGACCAAGAAGAAGCTTGAAAGCATGGACAT ] [+] EMBL AK067331 [ AAATTAGTGTTATTGGACAAGCTGTTGGTAAGACTGCGGGAGACTAATCATCGTGTGCTTATCTTCTCTCAGATGGTTAGGATGTTGGACATCCTTGCTGAGTATCTATCCCTCCGAGGATTCCAGTTTCAGAGGCTTGATGGCAGTACGAGAGCAGATCTTCGTCACCAGGCCATGGAGCATTTTAATGCTCCTGGAAGTGATGACTTCTGTTTTCTTCTGTCTACACGTGCTGGTGGGCTTGGTATTAATCTTGCAACAGCAGATACCGTGATCATTTTTGATTCAGACTGGAATCCGCAAAATGATTTACAGGCAATGAGTAGGGCACACAGGATTGGGCAACAAGAAACTGTTAACATATATCG TTTCGTGACATGCAAAAGTGTTGAAGAGGATATATTGGAACGTGCAAAGAAAAAAATGGTTCTTGATCACCTAGTGATTCAGAAGCTAAATGCTGAGGGCAGGCTCGAGAAGAAAGAATCAAAAAAAGGTGGTTCCATGTTTGACAAGAATGAACTTTCAGCGATATTGAGATTTGGAGCAGAAGAGTTATTCAAAGAAGATAAGACTGATGAAGAGACCAAGAAGAAGCTTGAAAGCATGGACATTGATGAAATTCTCGAGAGAGCTGAGAAAGTTGAAACAAAGGGTGGTGAAGGGGAGGAAGGAAATGAACTTCTTAGTGCATTCAAGGTTGCCAACTTTTCTAGTGGTGAGGATGATGCCACATTCTGGAGCAGATTAATTCAACCAGATGCTTCAGATATGGTTGAGGAGACTTTAGCACCTCGTGCTGCAAGAAATAAGAAGAGCTATGTTGAAGATCACCAACTTGATAAGAATAGCAACAGGAAAAGGCGAGGAATCGATGCACAAGAAAAGCCAAGGAGGCGTTCTAGCAGAACAATGGACACAGCTGTGTCATTACCACTCATAGATGGTTCAGCACATCAAGTACGAGAATGGTCATTTGGAAATTTGTCAAAGAAAGATGCTACCCGATTTGTTCGAGCGGTTAAAAAATTTGGAAACCCAAGCCAAATTGGGTTAATCGTGGATGATGTTGGTGGTGCAATAGCAAAGTCTTCGGTTGATCAACAGCTTGAGCTGTTTACTCTACTCATTGAGGGTTGTCAAGATGCTGTTAAAAATAATATGGATGCCAAGGGCACAGTGTTGGATTTTTTTGGTGTAGCAGTTAAGGCGCATGAGTTGATAGCCCGTGTGGAAGAGCTACAGTTCCTGGCAAGGCGCATTGCACGTTACAAAGATCCAGTTAGACAATACCGGATCCAGGCACCTTACAAAAAGCCACAGTGGTCAGCAAGCTGTGGTTGGACTGAAACTGATGATGCAAGATTGATGGTTGGAATTCATTGGTATGGCTATGGAAATTGGGAGAAGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTGCACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATCGTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCAAGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCAATGGTGGAGCTCGTTCATTAAGAGGCCGGCAAAAAGACACAAAAATAAAAGAAGATAATAATTCAATTAAAGATGACTTTAAGAAACGCAAGGTGGTGGAACCTGAAGCAAGGGAAGAAGGTGAAATTTCAGAATCTGAAGCAGAGACTAAATATCGTCAGGACAAGGAAGAAAAGTGGCTGGAATGGTGTTCTGAAGTTTTGGATGACGAGCAGGAGATATTAAAGCGGCTGGATAGGCTTCAGAATACTAGTGTAAATCTGCCAAAGGAAA ] [+] EMBL CB635834 [ ACACAGCATTGGGCAACAAGAAACTGTTAACATATATCGCTTTTGTGACATGCAAAAGTGTTGAAGAGGATATATTGGAACGTGCAAAGAAAAAAATGGTTCTTGATCACCTAGTGATTCAGAAGCTAAATGCTGAGGGCAGGCTCGAGAAGAAAGAATCAAAAAAAGGTGGTTCCATGTTTGACAAGAATGAACTTTCAGCGATATTGAGATTTGGAGCAGAAGAGTTATTCAAAGAAGATAAGACTGATGAAGAGACCAAGAAGAAGCTTGAAAGCATGGACATTGATGAAATTCTCGAGAGAGCTGAGAAAGTTGAAACAAAGGGTGGTGAAGGGGAGGAAGGAAATGAACTTCTTAGTGCATTCAAGGTTGCCAACTTTTCTAGTGGTGAGGATGATGCCACATTCTGGAGCAGATTAATTCAACCAGATGCTTCAGATATGGTTGAGGAGACTTTAGCACCTCGTGCTGCAAGAAATAAGAAGAGCTATGTTGAAGATCACCAACTTGATAAGAATAGCAACAGGAAAAGGCGAGGAATCGATGCACAAGAAAAGCCAAGGAGGCGTTCTAGCAGAACAATGGACACAGCTGTGTCATTACCACTCATAGATGGTTCAGCACATCAAGTACGAGAATGGTCATTTGGAAATTTGTCAAAGAAAGATGCTACCCGATTTGTTCGAGCGGTTAAAAAATTTGGAAACCCAAGCCAAATTGGGTTAATCGTGGATGATGTTGGTGGTGCAATAGCAAAGTCTTCGGTTGATCAACAGCTTGAGCTGTTT ] [+] EMBL CB619098 [ TCATTTGGAAATTTGTCAAAGAAAGATGCTACCCGATTTGTTCGAGCGGTTAAAAAATTTGGAAACCCAAGCCAAATTGGGTTAATCGTGGATGATGTTGGTGGTGCAATAGCAAAGTCTTCGGTTGATCAACAGCTTGAGCTGTTTACTCTACTCATTGAGGGTTGTCAAGATGCTGTTAAAAATAATATGGATGCCAAGGGCACAGTGTTGGATTTTTTTGGTGTAGCAGTTAAGGCGCATGAGTTGATAGCCCGTGTGGAAGAGCTACAGTTCCTGGCAAGGCGCATTGCACGTTACAAAGATCCAGTTAGACAATACCGGATCCAGGCACCTTACAAAAAGCCACAGTGGTCAGCAAGCTGTGGTTGGACTGAAACTGATGATGCAAGATTGATGGTTGGAATTCATTGGTATGGCTATGGAAATTGGGAGAAGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTGCACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATCGTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCAAGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCAATGGTGGAGCTCGTTCATTAAGAGGCCGGCAAAAAGACACAAAAATAAAAGAAGATAATAATTCAATTAAAGATGACTTTAAGAAACGCAAGGTGGTGG ] [+] EMBL AK063537 [ ATTTGTCAAAGAAAGATGCTACCCGATTTGTTCGAGCGGTTAAAAAATTTGGAAACCCAAGCCAAATTGGGTTAATCGTGGATGATGTTGGTGGTGCAATAGCAAAGTCTTCGGTTGATCAACAGCTTGAGCTGTTTACTCTACTCATTGAGGGTTGTCAAGATGCTGTTAAAAATAATATGGATGCCAAGGGCACAGTGTTGGATTTTTTTGGTGTAGCAGTTAAGGCGCATGAGTTGATAGCCCGTGTGGAAGAGCTACAGTTCCTGGCAAGGCGCATTGCACGTTACAAAGATCCAGTTAGACAATACCGGATCCAGGCACCTTACAAAAAGCCACAGTGGTCAGCAAGCTGTGGTTGGACTGAAACTGATGATGCAAGATTGATGGTTGGAATTCATTGGTATGGCTATGGAAATTGGGAGAAGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTGCACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATCGTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCAAGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCAATGGTGGAGCTCGTTCATTAAGAGGCCGGCAAAAAGACACAAAAATAAAAGAAGATAATAATTCAATTAAAGATGACTTTAAGAAACGCAAGGTGGTGGAACCTGAAGCAAGGGAAGAAGGTGAAATTTCAGAATCTGAAGCAGAGACTAAATATCGTCAGGACAAGGAAGAAAAGTGGCTGGAATGGTGTTCTGAAGTTTTGGATGACGAGCAGGAGATATTAAAGCGGCTGGATAGGCTTCAGAATACTAGTGTAAATCTGCCAAAGGAAAAGGTTCTTTCAAGAATTCGGAAATACCTCCAGATAATTGGTAATAAAATTGGAGAGATCGTTGATCAACATAGTGAATCATATAAGCAATCACGTATGGCAATGAGGTTGTGGAACTATGTGGCAAACTTTTCAAGTATGTCCGGGGAGCAATTGCACGACCTCTATTTAAAACTTAGTCAGGACCAAATGGAAGCTGGAGTAGGTCCGTCACATGGTGGGAATTTTGCATCAGTCCCTCCCAACAGGGGGCCTAAATCAAATCAGCTCCATCCTTCCAGAAACCAAAGGTCAACAAGGTCTGTCCAGTACGTCTCTGAGTCTTTCAACAATGGTGAAAACACTGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCTCCAAGGAAATATCAGCTT CTAGCATGCCGCACATGT AAAAATGGGGGAAGACCGTTCAATT GAAATTCTT TTTGAAGAAAAAAAA ATAATGAAGTGCTGGAACCTGATGTGGACCACA GTTTTGAATCCGAGTCTAAAAGAAATGCCA GGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACAT TGAAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCA GTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTGCC ] [+] EMBL OSS14945A [ GTATGGCTATGGAAATTGGGAGAAGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTGCACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATCGTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCAAGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCA ] [+] EMBL AU163592 [ AGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTGCACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATCGTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCAAGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCAATGGTGGAGCTCGTTCATTAAGAGGCCGGCAAAAAGACACAAAAATAAAAGAAGATAATAATTCAATTAAAGATGACTTTAAGAAACGCAAGGTGGTGGAACCTGAAGCAAGGGAAGAAGGTGAAATTTCAGAATCTGAAGCAGAGACTAAATATCGTCAGGACAAGGAAGAAAAGTGGCTGGAATGGTGT ] [-] EMBL CB674910 [ TCCCAACAGGGGGCCTAAATCAAATCAGCTCCATCCTTCCAGAAACCAAAGGTCAACAAGGTCTGTCCAGTACGTCTCTGAGTCTTTCAACAATGGTGAAAACACTGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCTCCAAGGAAATATCAGCTT CTAGCATGCCGCACATGT AAAAATGGGGGAAGACCGTTCAATT GAAATTCTT TTTGAAGAAAAAAAA ATAATGAAGTGCTGGAACCTGATGTGGACCACA GTTTTGAATCCGAGTTTAAAAGAAATGCCA GGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACAT TGAAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCA GTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTG ] [-] EMBL CB619099 [ AAACCAAAGGTCAACAAGGTCTGTCCAGTACGTCTCTGAGTCTTTCAACAATGGTGAAAACATTGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCTCCAAGGAAATATCAGCTT TTAGCATGCCGCACATGT AAAAATGGGGGAAGACCGTTCAATT GAAATTCTT TTTGAAGAAAAAAAA ATAATGAAGTGCTGGAACCTGATGTGGACCACA GTTTTGAATCCGAGTCTAAAAGAAATGCCA GGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTTTTCTGACAT TG AAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCA GTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTGCCC ] [+] EMBL BI807148 [ tgCAGCTTGCGAGCAT CCGCACATGTTGAAGAATGGGGGAAGACCGTTCAATTGGAAATTCTTGTTTGAAGAAAAAAAAAGATAATGAAGTGCTGGAACCTGATGTGGACCACANGNTTTGAATCCGAGTCTAAAAGAAATGCCACGGGGTT CTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATNCTTCTGACNTNTG AAAAAAAACTTGAGGCCAGAGGAAGAGTCTAGAAAATTTTGTCGGTCCGTTTTGTGATCTAATAGAAGAATATTTCACGTTGGGATGTTTTAAG AAGTTCATCTCAGCCATGATCTATATAGTTCAACATCNATACATGTATGATCTTTTTAAGTT CCATATAATGAATTATGGTTTAGTTGCAAAAAAAAAA] consensusID : consensus_13464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 697 fasta sequence [TGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCT-CCAAGGAAATATC-AGCTTCTAGCATGCCGCACATGTAAAAATGGGGGAAGACCGTTCAATTGAAATTCTTTTT-GAAGAAAAAAAAATAATGAAGTGCTGGAACCTGATGTGGACCACAGTTTTGAATCCGAGTCTAAAAGAAATGCCAGGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACATTG-AAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCAGTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTGCCCATTTTTAAAAAAAAAAAGA] [+] EMBL AU163593 [TGGGAATTCTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCT CCAAGGAAATATC AGCTTCTAGCATGCCGCACATGTAAAAATGGGGGAAGACCGTTCAATTGAAATTCTTTTT GAAGAAAAAAAAATAATGAAGTGCTGGAACCTGATGTGGACCACAGTTTTGAATCCGAGTCTAAAAGAAATGCCAGGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACATTG AAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCAGTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTGCCCATTTTTACTAAAAAAAA ] [-] EMBL CB635835 [ AGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTTTGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTGCTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAAGAGGTGTTCATCCCAGTCGTTTCCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGTGAACAATGTTGTCACTTAAAGCAGCATCGCT CCAAGGAAATATC AGCTTCTAGCATGCCGCACATGTAAAAATGGGGGAAGACCGTTCAATTGAAATTCTTTTT GAAGAAAAAAAAATAATGAAGTGCTGGAACCTGATGTGGACCACAGTTTTGAATCCGAGTCTAAAAGAAATGCCAGGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACATTGAAAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCAGTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATGATGAATTATGGTTTAGTTGCCCATTTTTAAAAAAATAAAGA] [+] EMBL AU070420 [ CAATGTTGTCACTTAAAGCAGCATCGCTCCCAAGGAAATATCNAGCTTCTAGCATGCCGCACATGTAAAAATGGGGGAAGACCNTTCAATTGAAATTCTTTTTGGAAGAAANAAAAATAATGAAGTGCTGGAACCTGATGTGGACCACAGTTTTGAATCCGANTCTAAAAGAAATGCCAGGGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACATTG AAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTGATCTAATAGAAGAATATTTCAGTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCTATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGTTTAGTTGCCCATTTTTAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13464#0 GTGTGNATATGTCTCCTCTACAGAAGCAGTATTACAAATGGATTTTGGAGCGGAATTTCC 60 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AGAATCTCAACAAAGGAGTTCGTGGGAATCAGGTCTCGCTTTTAAATATCGTTGTTGAGT 120 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TGAAAAAGTGCTGCAACCACCCATTTTTATTTGAAAGTGCTGATCATGGTTATGGTGGAG 180 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 ATAGCATTGGTGATCGCAATAAAGTTGAACGCATTGTTATGAGTAGTGGGAAATTAGTGT 240 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TATTGGACAAGCTGTTGGTAAGACTGCGGGAGACTAATCATCGTGTGCTTATCTTCTCTC 300 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AGATGGTTAGGATGTTGGACATCCTTGCTGAGTATCTATCCCTCCGAGGATTCCAGTTTC 360 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AGAGGCTTGATGGCAGTACGAGAGCAGATCTTCGTCACCAGGCCATGGAGCATTTTAATG 420 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CTCCTGGAAGTGATGACTTCTGTTTTCTTCTGTCTACACGTGCTGGTGGGCTTGGTATTA 480 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 ATCTTGCAACAGCAGATACCGTGATCATTTTTGATTCAGACTGGAATCCGCAAAATGATT 540 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TACAGGCAATGAGTAGGGCACACAGGATTGGGCAACAAGAAACTGTTAACATATATCGTT 600 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TCGTGACATGCAAAAGTGTTGAAGAGGATATATTGGAACGTGCAAAGAAAAAAATGGTTC 660 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TTGATCACCTAGTGATTCAGAAGCTAAATGCTGAGGGCAGGCTCGAGAAGAAAGAATCAA 720 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AAAAAGGTGGTTCCATGTTTGACAAGAATGAACTTTCAGCGATATTGAGATTTGGAGCAG 780 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AAGAGTTATTCAAAGAAGATAAGACTGATGAAGAGACCAAGAAGAAGCTTGAAAGCATGG 840 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 ACATTGATGAAATTCTCGAGAGAGCTGAGAAAGTTGAAACAAAGGGTGGTGAAGGGGAGG 900 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AAGGAAATGAACTTCTTAGTGCATTCAAGGTTGCCAACTTTTCTAGTGGTGAGGATGATG 960 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CCACATTCTGGAGCAGATTAATTCAACCAGATGCTTCAGATATGGTTGAGGAGACTTTAG 1020 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CACCTCGTGCTGCAAGAAATAAGAAGAGCTATGTTGAAGATCACCAACTTGATAAGAATA 1080 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GCAACAGGAAAAGGCGAGGAATCGATGCACAAGAAAAGCCAAGGAGGCGTTCTAGCAGAA 1140 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CAATGGACACAGCTGTGTCATTACCACTCATAGATGGTTCAGCACATCAAGTACGAGAAT 1200 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GGTCATTTGGAAATTTGTCAAAGAAAGATGCTACCCGATTTGTTCGAGCGGTTAAAAAAT 1260 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TTGGAAACCCAAGCCAAATTGGGTTAATCGTGGATGATGTTGGTGGTGCAATAGCAAAGT 1320 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CTTCGGTTGATCAACAGCTTGAGCTGTTTACTCTACTCATTGAGGGTTGTCAAGATGCTG 1380 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 TTAAAAATAATATGGATGCCAAGGGCACAGTGTTGGATTTTTTTGGTGTAGCAGTTAAGG 1440 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CGCATGAGTTGATAGCCCGTGTGGAAGAGCTACAGTTCCTGGCAAGGCGCATTGCACGTT 1500 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 ACAAAGATCCAGTTAGACAATACCGGATCCAGGCACCTTACAAAAAGCCACAGTGGTCAG 1560 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CAAGCTGTGGTTGGACTGAAACTGATGATGCAAGATTGATGGTTGGAATTCATTGGTATG 1620 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GCTATGGAAATTGGGAGAAGATACGATTAGATCCAAAACTTAGCTTGACAGCGAAAATTG 1680 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CACCAGCAACCCTTGGTGAACGAGAGACGTTTTTACCGCGTGCACCGAACTTGGATAATC 1740 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GTGCTAGTGCTCTTCTACAAAAGGAATTTGCCAATCTTCGTGGTAAGAGCTCGAAAGCCA 1800 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AGGGAGGTCCTCGTCAAGCAATTGATAATGAAAGCAATGGTGGAGCTCGTTCATTAAGAG 1860 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GCCGGCAAAAAGACACAAAAATAAAAGAAGATAATAATTCAATTAAAGATGACTTTAAGA 1920 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AACGCAAGGTGGTGGAACCTGAAGCAAGGGAAGAAGGTGAAATTTCAGAATCTGAAGCAG 1980 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AGACTAAATATCGTCAGGACAAGGAAGAAAAGTGGCTGGAATGGTGTTCTGAAGTTTTGG 2040 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 ATGACGAGCAGGAGATATTAAAGCGGCTGGATAGGCTTCAGAATACTAGTGTAAATCTGC 2100 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CAAAGGAAAAGGTTCTTTCAAGAATTCGGAAATACCTCCAGATAATTGGTAATAAAATTG 2160 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GAGAGATCGTTGATCAACATAGTGAATCATATAAGCAATCACGTATGGCAATGAGGTTGT 2220 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 GGAACTATGTGGCAAACTTTTCAAGTATGTCCGGGGAGCAATTGCACGACCTCTATTTAA 2280 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 AACTTAGTCAGGACCAAATGGAAGCTGGAGTAGGTCCGTCACATGGTGGGAATTTTGCAT 2340 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CAGTCCCTCCCAACAGGGGGCCTAAATCAAATCAGCTCCATCCTTCCAGAAACCAAAGGT 2400 consensus_13464#1 ------------------------------------------------------------ consensus_13464#0 CAACAAGGTCTGTCCAGTACGTCTCTGAGTCTTTCAACAATGGTGAAAACACTGGGAATT 2460 consensus_13464#1 ----------------------------------------------------TGGGAATT 8 ******** consensus_13464#0 CTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTT 2520 consensus_13464#1 CTGAAGCCTGGAAGCGACGGAGAAGATCTGAGCCTGATAATCAATTTGATAACCAACCTT 68 ************************************************************ consensus_13464#0 TGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTG 2580 consensus_13464#1 TGTATCAGGCTCCTCCAATCATGACAAATGGAAACAGGTTACAGGAATCTAGCAGTTCTG 128 ************************************************************ consensus_13464#0 CTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAA 2640 consensus_13464#1 CTGGTATTCTTGGTTGGGCTCCGGTTGAAATGAGACGATACGGCAATGAAAGACCAAAAA 188 ************************************************************ consensus_13464#0 GAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGT 2700 consensus_13464#1 GAGGTGTTCATCCCAGTCGTTTTCCACCCGGGCATGGGCCTTTGCTGTAGTTGTTCAAGT 248 ************************************************************ consensus_13464#0 GAACAATGTTGTCACTTAAAGCAGCATCGCTCCAAGGAAATATCAGCTTCTAGCATGCCG 2760 consensus_13464#1 GAACAATGTTGTCACTTAAAGCAGCATCGCTCCAAGGAAATATCAGCTTCTAGCATGCCG 308 ************************************************************ consensus_13464#0 CACATGTAAAAATGGGGGAAGACCGTTCAATTGAAATTCTTTTTGAAGAAAAAAAAATAA 2820 consensus_13464#1 CACATGTAAAAATGGGGGAAGACCGTTCAATTGAAATTCTTTTTGAAGAAAAAAAAATAA 368 ************************************************************ consensus_13464#0 TGAAGTGCTGGAACCTGATGTGGACCACAGTTTTGAATCCGAGTCTAAAAGAAATGCCAG 2880 consensus_13464#1 TGAAGTGCTGGAACCTGATGTGGACCACAGTTTTGAATCCGAGTCTAAAAGAAATGCCAG 428 ************************************************************ consensus_13464#0 GGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACA 2940 consensus_13464#1 GGGTTGCTGAGGAGATGCTGGCACCTTTAGCAGATGTACACACACAAGATTCTTCTGACA 488 ************************************************************ consensus_13464#0 TTGAAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTG 3000 consensus_13464#1 TTGAAAAAAAAACTTGAGGCAAGAGGAAGAGTCTAGAAAATTTTGTCGGTCAGTTTTGTG 548 ************************************************************ consensus_13464#0 ATCTAATAGAAGAATATTTCAGTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCT 3060 consensus_13464#1 ATCTAATAGAAGAATATTTCAGTTGGGATGTTTTAAGAAAGTTCATCTCAGCAATGATCT 608 ************************************************************ consensus_13464#0 ATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGT 3120 consensus_13464#1 ATATAGTTCAACATCAATACATGTATGATCTTTTTAAGTTGCAATATAATGAATTATGGT 668 ************************************************************ consensus_13464#0 TTAGTTGCCCA-----AAAAAAA------ 3138 consensus_13464#1 TTAGTTGCCCATTTTTAAAAAAAAAAAGA 697 *********** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||