These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2215 fasta sequence [TTCTTCCTGCTTCCTCTCTCTCTCTTCTCTCCTCCTCCTCCCACTGAGATCCCTCTCCCCTCCCCGCCATCGCCATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCACGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAG-CCGATAAAGAAGTA-TTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAGAAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTCTCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGATTCGATGGATCCTAGACACCCTGAGGGAGCAACTGATGAGTTTGTGTTGGATCTTGTGGAGCAATGCACATTTCAAAAACAGCGAATAATGCATCTAGTTATGACATCAAGGGATGAAGTGGTGGTATCACAAGCAATAGAACTGAACGAAGAGCTTCACAAGGTCCTTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATTGAGCCATCCAACACTGATAAGAAACTGGGGGCACTGAATATTCGCTCGCCATATCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAGCTGTGTGAGTGACCATCTGCATTGGTTTTACTCTACTTTCATCTCCTTTTGGCTTTCTGATGTGTAGTAGTGGAGTAGTGCTGTGGGTTTTGCTTGTGTCAGAAGCGTGCCATTCGGCTTTTAGCCAGCAGATAATGGATCAGTTGAGCCCCATGATCATGGTGGTGTTGTGGGTCACTCTTCTCAATAGCATTGTAAAAGATTATGCCCATGACTATGAGACACCTTTCTGGCAAGACCAAAGATCCACTAGTATCCTGGAGTAAGTATCTTTGAGACAATCTTGAATGGTTAGGCTGGCTTGCCAAAGTATTTGACTCTACCTGCTAGTGGAGTAGAGATCTGGCAGATTACTGGTATTATTTTATGTTCAAGTGGGTATGCATTCTTTGGAAGGCATACATTTTTTTATTTTCTAGTTACATGGGGTAGCATATAGGAGCAAAGATTTGTGTTGAACTGTTTGTAGAATTTGTGTAGCAAGGGAAATGACCAATTGGACAATAGGAAAACGATCATCAATCATGAC] [+] EMBL AK107316 [TTCTTCCTGCTTCCTCTCTCTCTCTTCTCTCCTCCTCCTCCCACTGAGATCCCTCTCCCCTCCCCGCCATCGCCATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCACGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGTTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAG CCGATAAAGAAGTA TTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAGAAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTCTCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGTATGATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGATTCGATGGATCCTAGACACCCTGAGGGAGCAACTGATGAGTTTGTGTTGGATCTTGTGGAGCAATGCACATTTCAAAAACAGCGAATAATGCATCTAGTTATGACATCAAGGGATGAAGTGGTGGTATCACAAGCAATAGAACTGAACGAAGAGCTTCACAAGGTCCTTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATTGAGCCATCCAACACTGATAAGAAACTGGGGGCACTGAATATTCGCTCGCCATATCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAGCTGTGTGAGTGACCATCTGCATTGGTTTTACTCTACTTTCATCTCCTTTTGGCTTTCTGATGTGTAGTAGTGGAGTAGTGCTGTGGGTTTTGCTTGTGTCAGAAGCGTGCCATTCGGCTTTTAGCCAGCAGATAATGGATCAGTTGAGCCCCATGATCATGGTGGTGTTGTGGGTCACTCTTCTCAATAGCATTGTAAAAGATTATGCCCATGACTATGAGACACCTTTCTGGCAAGACCAAAGATCCACTAGTATCCTGGAGTAAGTATCTTTGAGACAATCTTGAATGGTTAGGCTGGCTTGCCAAAGTATTTGACTCTACCTGCTAGTGGAGTAGAGATCTGGCAGATTACTGGTATTATTTTATGTTCAAGTGGGTATGCATTCTTTGGAAGGCATACATTTTTTTATTTTCTAGTTACATGGGGTAGCATATAGGAGCAAAGATTTGTGTTGAACTGTTTGTAGAATTTGTGTAGCAAGGGAAATGACCAATTGGACAATAGGAAAACG ] [+] EMBL AK067345 [ CTTCCTGCTTCCTCTCTCTCTCTTCTCTCCTCCTCCTCCCACTGAGATCCCTCTCCCCTCCCCGCCATCGCCATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCACGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAG CCGATAAAGAAGTA TTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAGAAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTCTCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGATTCGATGGATCCTAGACACCCTGAGGGAGCAACTGATGAGTTTGTGTTGGATCTTGTGGAGCAATGCACATTTCAAAAACAGCGAATAATGCATCTAGTTATGACATCAAGGGATGAAGTGGTGGTATCACAAGCAATAGAACTGAACG AGAGCTTCACAAGGTCCTTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATTGAGCCATCCAACACTGATAAGAAACTGGGGGCACTGAATATTCGCTCGCCATATCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAGCTGT ] [+] EMBL CB627600 [ CTCTTCTCTCCTCCTCCTCCCACTGAGATCCCTCTCCCCTCCCCGCCATAGCCATGGCTTCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGGCGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCGCGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAG CCGATAAAGAAGTA TTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAGAAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTCTCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGTATAATTCGGAAAGCT ] [+] EMBL AU069438 [ CTCCTCCTCCTCCCACTGAGATCCCTCTCCCCTCCCCGCCATCGCCATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCACGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAGCCCGATTAAGAAGTATTTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGg ] [+] EMBL AU183261 [ CCCTCTCCCCTCCCCGCCATCGCCATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCACGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAG CCGATAAAGAAGTA TTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAGAAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTCTCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTT ] [+] EMBL CB679720 [ ATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGAGACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCACGGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCTCGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACATCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAG CCGATAAAGAAGTA TTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAGAAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTCTCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATGTTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATAATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTTCCGAGTCAAGTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGATTC ] [+] EMBL CB000310 [ GACAGAAGGAAGTGCATGCGCAGCCTGTTTCCCAGTCAAGTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTGATTCGATGGATCCTAGACACCCTGAGGGAGCAACTGATGAGTTTGTGTTGGATCTTGTGGAGCAATGCACATTTCAAAAACAGCGAATAATGCATCTAGTTATGACATCAAGGGATGAAGTGGTGGTATCACAAGCAATAGAACTGAACGAAGAGCTTCACAAGGTCCTTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATTGAGCCATCCAACACTGATAAGAAACTGGGGGCACTGAATATTCGCTCGCCATATCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCT ] [-] EMBL CB679721 [ AGTTATGACATCAAGGGATGAAGTGGTGGTATCACAAGCAATAGAACTGAACGAAGAGCTTCACAAGGTCCTTGTACGGCATGATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGGAAGAAGATGCCGAAAGCCTTTACCGGAGGCTTCGAAAGGGAAAAGCATTATCGGAAGATTATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCACTCACCATTGAGCCATCCAACACTGATAAGAAACTGGGGGCACTGAATATTCGCTCGCCATATCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGAATGCAGTTCTATAGAGATGCTTG ] [+] EMBL AU173506 [ TCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAaaaaaa ] [+] EMBL BM039041 [ CTGAA CGAGGCCT ACGT CTGATTCCACCACCGCCTGCCAAGCAC CCGAGAGGGAGAGGTTCTTCCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATTGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAAC ATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAGCTGTGTGAGTGACCATCTGCATTGGTTTTACTCTACTTTCAaaaaaaaaa ] [-] EMBL CB627601 [ TAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAGCTGTGTGAGTGACCATCTGCATTGGTTTTACTCTACTTTCATCTCCTTTTGGCTTTCTGATGTGTAGTAGTGGAGTAGTGCTGTGGGTTTTGCTTGTGTCAGAAGCGTGCCATTCAGCTTTTAGCCAGCAGATAATGGATCAGTTGAGCCCCATGATCATGGTGGTGTTGTGGGTCACTCTTCTCAATAGCATTGTAAAAGATTATGCCCATGACTATGAGACACCTTTCTGGCAAGACCAAAGATCCACTAGTATCCTGGAGTAAGTATCTTTGAGACAATCTTGAATGGTTAGGCTGGCTTGCCAAAGTATTTGACTCTACCTGCTAGTGGAGTAGAGATCTGGCAGATTACTGGTATTATTTTATGTTCAAGTGGGTATGCATTCTTTGGAAGGCATACATTTTTTTATTTTCTAGTTACATGGGGTAGCATATAGGAGCAAAGATTTGTGTTGAACTGTTTGTAGAATTTGTGTAGCAAGGGAAATGACCAATGGGACAATAGGAAAACGATCATCAATCATGAC] consensusID : consensus_13469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTCCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATTGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAAAAAAAAAAGTGCCCNAAAAAAAAAAAAAAAAA] [+] EMBL BQ908448 [CCGCCCACGCGTCCGCCCACGCGTCCGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGGAGAGGTTCTTCCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTATCATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTTGCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATTGTCGTCATCTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGTGGCAAAAAAAAAA ] [+] EMBL AU183262 [ GATGCCAACTTGCTGGGCCATNTTAGGGGCTTATCATTGCNCAGCCGGGACGGCAGTAGCTNGTGTAGCGGCAGCNCAGATTATGGAGACTGAGGTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTNTTCAGGATGATATTNTGCTTGCCCGGCAATTGATGTTGANANAGGCAGCCTCAGCCTCATCGTCGTCATNTTCTCGCTGACCATTGTACACTTGGTTTTCTAATTCTTTTATAATTNTTCCCCCTTCCGCTTACCTGACATTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTNTATANANATGCTTGTGTGGCAAGCTGTGTGAGTGCCCNAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13469#0 TTCTTCCTGCTTCCTCTCTCTCTCTTCTCTCCTCCTCCTCCCACTGAGATCCCTCTCCCC 60 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TCCCCGCCATCGCCATGGCTCCCCCACCGCCGCCGCCGCCGCCGTCGGAGGAAGAGACGA 120 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 GACACTAGAAAAGACGGTTCTTGACCGAGTTTGCGGCCGATCCGGGCTTGGATTTGCCAC 180 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 GGGAAAGGAAGGAGTTTCGGGGGCTGATAGAGTGAAAGGCGACGAGGGAGAAGATGGCCT 240 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 CGGAAATGGTTAAGGCGGCGACGAGTGAGAAGCTCAAGGAGATGGATTGGGCCAAGAACA 300 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TCGAAATCTGCGAGCTCGTCGCTCAGGATCCTGGGAAAGCGAAGGATGTGATCAAGCCGA 360 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TAAAGAAGTATTTAGGTAGCAGGAGCAAGAACACTCAACTTTATGCTGTTATGCTGTTAG 420 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 AAATGCTCATGAATAACTGCGGAGAACCTATCCACAAGCAGGTCATTGATAACGGTCTTC 480 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TCCCGATACTTGTGAAGATTGTGAAGAAAAAGACAGAATTACCAGTTCGTGAAAAAATAT 540 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGT 600 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 ACTATGGGGCATATTATGAGTTGGTGTCTGCTGGCGTTCAGTTTTCGAATCGCCCAAATG 660 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TTGTTGTTACACAAGCACAAGCTCCAGTCCCGGTCCCAGAACCAACAATCGAACCAAATA 720 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 ATAACAGTTTATCTAGGAGATTGGACGAAGGACAGAAGGAAGTGCATGCGCAGCCTGTTT 780 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 CCGAGTCAAGTATAATTCGGAAAGCTTCTAGTGTCATGGAAGTTCTAAAGGACGTGCTTG 840 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 ATTCGATGGATCCTAGACACCCTGAGGGAGCAACTGATGAGTTTGTGTTGGATCTTGTGG 900 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 AGCAATGCACATTTCAAAAACAGCGAATAATGCATCTAGTTATGACATCAAGGGATGAAG 960 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TGGTGGTATCACAAGCAATAGAACTGAACGAAGAGCTTCACAAGGTCCTTGTACGGCATG 1020 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 ATGCGTTGCTTTCAGTTCAGCCAACTACAACAGTAGCTTCTACTCTCAAGGAGGAAGAGG 1080 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 AAGAAGATGCCGAAAGCCTTTACCGGAGGCTTCGAAAGGGAAAAGCATTATCGGAAGATT 1140 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 ATACAGATGACTCCATACCATCATTTCGATCTATACCTGAAGACAAGATGCGCCGCCCAC 1200 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TCACCATTGAGCCATCCAACACTGATAAGAAACTGGGGGCACTGAATATTCGCTCGCCAT 1260 consensus_13469#1 -------------------------------------------------CCGCCCAC-GC 10 *** * * consensus_13469#0 ATCCTGAAGCGAGGCCTGACGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGG 1320 consensus_13469#1 GTCCGCCCACGCGTC----CGTGCTGATTCCACCACCGCCTGCCAAGCACGCCGAGAGGG 66 *** ** * * ***************************************** consensus_13469#0 AGAGGTTCTTTCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTAT 1380 consensus_13469#1 AGAGGTTCTTCCGGGAGAAGAGCATGGATGCCAACTTGCTGGGCCATCTTAGGGGCTTAT 126 ********** ************************************************* consensus_13469#0 CATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAG 1440 consensus_13469#1 CATTGCACAGCCGGGACGGCAGTAGCTCGTGTAGCGGCAGCACAGATTATGGAGACTGAG 186 ************************************************************ consensus_13469#0 GTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTT 1500 consensus_13469#1 GTGTAGGTATATGCGGTACATAAAGGATTATTTTTTGTTCTTCAGGATGATATTCTGCTT 246 ************************************************************ consensus_13469#0 GCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATCGTCGTCATCTTCTCGCTGA 1560 consensus_13469#1 GCCCGGCAATTGATGTTGAGAGAGGCAGCCTCAGCCTCATTGTCGTCATCTTCTCGCTGA 306 **************************************** ******************* consensus_13469#0 CCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACA 1620 consensus_13469#1 CCATTGTACACTTGGTTTTCTAATTCTTTTATAATTCTTCCCCCTTCCGCTTACCTGACA 366 ************************************************************ consensus_13469#0 TTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGT 1680 consensus_13469#1 TTATCGGAAAGTTGAACAATGCTGTGTTGTGAGCTTTCAGTTCTATAGAGATGCTTGTGT 426 ************************************************************ consensus_13469#0 GGCAAGCTGTGTGAGTGACCATCTGCATTGGTTTTACTCTACTTTCATCTCCTTTTGGCT 1740 consensus_13469#1 GGCAAAAAAAAAAAGTGCCCNAAAAAAAAAAAAAAAAA---------------------- 464 ***** **** ** * * consensus_13469#0 TTCTGATGTGTAGTAGTGGAGTAGTGCTGTGGGTTTTGCTTGTGTCAGAAGCGTGCCATT 1800 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 CGGCTTTTAGCCAGCAGATAATGGATCAGTTGAGCCCCATGATCATGGTGGTGTTGTGGG 1860 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TCACTCTTCTCAATAGCATTGTAAAAGATTATGCCCATGACTATGAGACACCTTTCTGGC 1920 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 AAGACCAAAGATCCACTAGTATCCTGGAGTAAGTATCTTTGAGACAATCTTGAATGGTTA 1980 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 GGCTGGCTTGCCAAAGTATTTGACTCTACCTGCTAGTGGAGTAGAGATCTGGCAGATTAC 2040 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TGGTATTATTTTATGTTCAAGTGGGTATGCATTCTTTGGAAGGCATACATTTTTTTATTT 2100 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 TCTAGTTACATGGGGTAGCATATAGGAGCAAAGATTTGTGTTGAACTGTTTGTAGAATTT 2160 consensus_13469#1 ------------------------------------------------------------ consensus_13469#0 GTGTAGCAAGGGAAATGACCAATTGGACAATAGGAAAACGATCATCAATCATGAC 2215 consensus_13469#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||