These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1612 fasta sequence [AAACACCAACACACCCACCTTCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCGGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGGTATGTCACTCTGTTCTCTCAGTGACTTGTAATCTGATTGTCAACGGAAGTGTTTGTGGATATCTGAGTAAACATTGGTCTATTGTACTTTCAGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC-TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA-CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA-TAATATGTTACTATTGCTGAGGAACTGCGCATATGGACATGAGTGCTTTATTATTTC] [+] EMBL AK072924 [AAACACCAACACACCCACCTTCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCGGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGGTATGTCACTCTGTTCTCTCAGTGACTTGTAATCTGATTGTCAACGGAAGTGTTTGTGGATATCTGAGTAAACATTGGTCTATTGTACTTTCAGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACT ] [+] EMBL CA765180 [ ACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGCCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGTCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTAGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATNAAGTAATGAAGTATTAATATGGTACTATTGCTGAGGAACTGng ] [-] EMBL CB665671 [ GTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCAT GTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCTATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAACTGCGCATATGGACATGAGTGCTTTATTATTTC] [-] EMBL CB671447 [ TCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACC TAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAACTGCGCATAAGGGCATGAGTGCTTTATTATTT ] [+] EMBL AU068034 [ ACCTTAGTTAAATGGCAAAATTCCCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAA CGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAAaaaa ] [+] EMBL BI806863 [ CTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAATCGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCGGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAGTA TAATATGTTACTATTGCTGAGGAAaaaaa ] consensusID : consensus_13476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1474 fasta sequence [CCCCCCCCTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB671446 [CCCCCCCCTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTG ] [+] EMBL CB665670 [ GGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCAT GTCACTACAAGCATCA ] [-] EMBL CB650109 [ TTCATTGGCAAATTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGATGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGGTGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTA ] [-] EMBL CA762570 [ GAGCTTGGTGGGGATGTGACCCTAGTTTAATGGCAAATTTCTCCTCATGTAGGTCACTCCAAGCATCTTCCTGAGGAATACCGAGCTGCAGTAACTGAGCTACTCCCAAAGGCTTCAATGCTTTACATGAGCAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTCCGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGTCACCAGATGATCCGATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCCGAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTTTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF311351 [ GTGTGGAAAGCATTAACAACCCCCATGGAGTGTTGGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCCTTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAATCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATGCATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATTTGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13476#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 762 fasta sequence [TCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTNCGGGCGTACGTNGAGCTGTACGCGGCGCTCGGGTTGGCGTNCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAANGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGTATAGTTTTCTGCTTTCTTCCTTTGTTGTACGCACTTTGCTCATTACAGTTTAGCCTAGAGCTATATTGCCGAAAATAAAATAGTGTAGGAAAATTTTGACCCATGTTGGTGAAAGCTTCATATATATTTTCTTCTCACTACAGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACA] [+] EMBL AU068033 [TCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTNCGGGCGTACGTNGAGCTGTACGCGGCGCTCGGGTTGGCGTNCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAANGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGG ] [+] EMBL CB650108 [ CCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGGAGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGGGGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTGATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCGGCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGATAAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGACCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTTCTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGTATAGTTTTCTGCTTTCTTCCTTTGTTGTACGCACTTTGCTCATTACAGTTTAGCCTAGAGCTATATTGCCGAAAATAAAATAGTGTAGGAAAATTTTGACCCATGTTGGTGAAAGCTTCATATATATTTTCTTCTCACTACAGGAGGAGTATCAACTTGTAAGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGTCCTGTAGATTTTGTTAGTGATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13476#0 AAACACCAACACACCCACCTTCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGG 60 consensus_13476#1 -----------------------CCCCCCCCTCGTCTTCCCCCAATTCAAGAAGCGGAGG 37 consensus_13476#2 --------------------TCTCCCCCTCTTCGTCTTCCCCCAATTCAAGAAGCGGAGG 40 ***** * ***************************** consensus_13476#0 AGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGG 120 consensus_13476#1 AGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGG 97 consensus_13476#2 AGAGAGCGCGGCGGGGGTGGAGAGAAGGTTCTAGATTGTTCTGGAGGTGGAGGGATGTGG 100 ************************************************************ consensus_13476#0 GGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTG 180 consensus_13476#1 GGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTG 157 consensus_13476#2 GGGCGGCAGTACTGGGGCGGCGGCCGGCGGCCGAGCGGCGGCGGCGGCGGGGTGGTGGTG 160 ************************************************************ consensus_13476#0 ATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCG 240 consensus_13476#1 ATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTGCGGGCGTACGTGGAGCTGTACGCG 217 consensus_13476#2 ATGTTCGCGTGGCTGTCGAGCCAGGAGCGGCAGGTNCGGGCGTACGTNGAGCTGTACGCG 220 *********************************** *********** ************ consensus_13476#0 GCGCG-GGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGAT 299 consensus_13476#1 GCGCTCGGGTGGGCGTGCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGAT 277 consensus_13476#2 GCGCTCGGGTTGGCGTNCCTCGTCTGCCACTCCGAGTTCCTCACCCTGTTTTTCCCTGAT 280 **** **** ***** ******************************************* consensus_13476#0 AAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGA 359 consensus_13476#1 AAGGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGA 337 consensus_13476#2 AANGCTGCCATGCTTGCTGATAGGGTGCTTGCAGAACTAGTTAAGGAACTGAAGGTTAGA 340 ** ********************************************************* consensus_13476#0 CCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTT 419 consensus_13476#1 CCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTT 397 consensus_13476#2 CCTGTACCTGTTGTGTTTGCCTCATTCTCTGGAGGCCCAAAAGGCTGCACATACAAGGTT 400 ************************************************************ consensus_13476#0 CTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTA 479 consensus_13476#1 CTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGAGGAGTATCAACTTGTA 457 consensus_13476#2 CTTCAGCTGATCGAGAGAAGATGCGAGGGTCAACTGAGCCTGGTATAGTTT---TCTGCT 457 ******************************************* *** * ** consensus_13476#0 AGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGT----CCTGTAG--ATTTTGTTAGT 533 consensus_13476#1 AGAGACTGTCTTTGCGGGCAGATGTACGACTCGAGT----CCTGTAG--ATTTTGTTAGT 511 consensus_13476#2 TTCTTCCTTTGTTGTACGCACTTTGCTCATTACAGTTTAGCCTAGAGCTATATTGCCGAA 517 * * *** *** * * * *** *** ** ** *** consensus_13476#0 GATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGT 593 consensus_13476#1 GATTTGGGCACCCGATTTCTCCTTCACCCAAGTGTCCTGAAGATGTCTCAACCGCCTCGT 571 consensus_13476#2 AATAAAATAGTGTAGGAAAATTTTGACCCATGT-TGGTGAAAGCTTCATATATATTTTCT 576 ** ** ***** ** * **** ** * * * consensus_13476#0 ATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAA 653 consensus_13476#1 ATCCTATCATGGATGACTAGAGGCATTGCCTCGGGACTAGACACGCTGTTCATTGGCAAA 631 consensus_13476#2 -TCTCACTACAGG-----AGGAGTATCAACTTGTA---AGAGACTGTCTTTGCGGGCAGA 627 ** * * * ** * ** ** * *** ** * ** **** * consensus_13476#0 TTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTGGTATGTCACTCT 713 consensus_13476#1 TTTGAAGCGCAACGTGCAGAATATTGGGACACACTATACTCATCAGTG------------ 679 consensus_13476#2 TGTACGACTCGA-GTCCTGTAGATTTTGT-------TAGTGATTTGGG------------ 667 * * * * * ** * * * *** * ** * ** * * consensus_13476#0 GTTCTCTCAGTGACTTGTAATCTGATTGTCAACGGAAGTGTTTGTGGATATCTGAGTAAA 773 consensus_13476#1 ------------------------------------------------------------ consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 CATTGGTCTATTGTACTTTCAGCATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGA 833 consensus_13476#1 ----------------------CATGTTGGTCCAATACTCATATTCTGTTCTGAAGACGA 717 consensus_13476#2 -------------------CACCCGATTTCTCCTTCACCCAAGT---GTCCTGAAGATGT 705 * ** *** ** ** * ** ******* * consensus_13476#0 TGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGG 893 consensus_13476#1 TGAACTTGCTCCGTGTTCAATTGTTCAAAAATTTGGTCGACGTCTGCTGGAGCTTGGTGG 777 consensus_13476#2 CTCAACCGCCTCGTATCCTATCATGGATGACTAGAGGCATTGCCT--CGGGACTAGACA- 762 * ** *** * * ** * * * * * * * ** ** ** * consensus_13476#0 TGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCC 953 consensus_13476#1 TGATGTGAACCTAGTTAAATGGCAAAATTCTCCTCATGTAGGTCACTACAAGCATCATCC 837 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 TGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAG 1013 consensus_13476#1 TGAGGAATACCGAGCTGCAGTAACTGAGCTACTCACAAAGGCTTCAATGCTTTACATGAG 897 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 CAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTC 1073 consensus_13476#1 CAGGAGGCAACTTAACAGCTATGATCTAGGCACAAGTGAGCATAGCGACATGTTGGCCTC 957 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 CGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCC 1133 consensus_13476#1 CGACGTGCATAAAGCTGGCACGAATTCAAACAACAGGCTAAGAAGGGCACCAGATGATCC 1017 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 GATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCC 1193 consensus_13476#1 GATTGACCATTTCTTGCTACCGAGTTCCATGGAGTATCATGAAAGCAGCAACGAAGAGCC 1077 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 GAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTT 1253 consensus_13476#1 GAAACCGGAGTTGTTCAACATGCCCAGTGTGGAAAGCATTAACAACCCCCATGGAGTGTT 1137 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 GGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCC 1313 consensus_13476#1 GGGTCAGATGCTTTACGATGTATGCGTCCCCAAGAACGTAGAAGGCTGGGACTTCAAGCC 1197 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 TTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAA 1373 consensus_13476#1 TTCTGCATCAATAAACGGGAGGCATATAAATTCTATTGCTCGTCAGCATGGCACTTTCAA 1257 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 TCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATG 1433 consensus_13476#1 TCCGATAAAATGCATACGGCGCTCAAAATTGTAAAAATGTTCAACTGGAGTACCCTGATG 1317 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 CATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATT 1493 consensus_13476#1 CATATAGCTGACCAGTGTATACTATGAGAGAACATTGTTTGATGGATGCTGGTGAAAATT 1377 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 TGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAATGAAG 1553 consensus_13476#1 TGAGATACCTGCTATCCATTGAATAAAATGCGAGATATTTTTGTAGATAAAGTAAAAAAA 1437 consensus_13476#2 ------------------------------------------------------------ consensus_13476#0 TATAATATGTTACTATTGCTGAGGAACTGCGCATATGGACATGAGTGCTTTATTATTTC 1612 consensus_13476#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 1474 consensus_13476#2 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||