cluster # 13479

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Oryza sativa
cluster # 13479 cluster # 13479 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13479#0 length = 654 sequences # 4
consensus_13479#1 length = 309 sequences # 7

consensus_13479#2 length = 236 sequences # 1
consensus_13479#3 length = 140 sequences # 1

consensusID : consensus_13479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 654
fasta sequence

                              [CACGCGTCCGGGAATCGCTTGATTCCGATGAAGTTCTCCGGCGAAGGTCGACCGTTGTCGGCGGCCAGCGCGGCCGCGATCTCGGCTTCCGACGACGTCGCCGACTCCATCGACGCGCTCTACCGCAAGGATGAGGCCATGGCAGAGCTCAAGTCGGAGGTGATGGAGGCGCTGCAAAAGGAGGTCAGGTCGCTCGATGACGACAGCTGGATGTTCGCCGCGCCCCGCTCCCGCATCAACCTCGTCTCTATGTCTGGTGGTTACCTACGCAAGCAGCAGGAAAAATTGGCTGACCTCGGTCAAGCATCCAAGAAGACGAGGAATTTCTAGGAACTAGGTGTCTTCCAGGGAAGCCTCTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGA-CAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAG-CTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATTTTCCACCTCAAAGCAATGCATTTCACAGTGAAATTAAAAAAAAAA]

[+] EMBL C98012               [CACGCGTCCGGGAATCGCTTGATTCCGATGAAGTTCTCCGGCGAAGGTCGACCGTTGTCGGCGGCCAGCGCGGCCGCGATCTCGGCTTCCGACGACGTCGCCGACTCCATCGACGCGCTCTACCGCAAGGATGAGGCCATGGCAGAGCTCAAGTCGGAGGTGATGGAGGCGCTGCAAAAGGAGGTCAGGTCGCTCGATGACGACAGCTGGATGTTCGCCGCGCCCCGCTCCCGCATCAACCTCGTCTCTATGTCTGGTGGTTACCTACGCAAGCAGCAGGAAAAATTGGCTGACCTCGGTCAAGCATCCAAGAAGACGAGGAATTTCTAGGAACTAGGTGTCTTCCAGGGAAGCCTCTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGA CAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAG CTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATTTTCCACCTCAAAGCAATGCATTTCACAGTGAAATTAAAAAAAAAA]
[+] EMBL OS0371A              [                    GATTCCGATG AGCTCTCCGGCG AGGTCGACCG TGTC GCGGCCAGCGCGGGCGCGATCTCGGCCTCCGACGACGT GCCGACTCCATCGACGCGCTCTACCGCAAGGATGAGGCCATGGCAGAGCTCAAGTCGGAGGTGATGGAGGCGCTGCAAAAGGAGGTCAGGTCGCTCGATGACGACAGCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA763829             [                                                                                                                                                                                                                                                                          ACGCAAGCAGCAGGAAAAATTGGCTGACCTCGGTCAAGCATCCAAGAAGACGAGGAATTTCTAGGAACTAGGTGTCTTCCAGGGAAGCCTCTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTCGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGCTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGA CAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAG CTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCAT                                              ]
[-] EMBL CB966305             [                                                                                                                                                                                                                                                                                                                                                                                                       CTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACCAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGNCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATTTTCCCCCTCCAAaaaaaa                           ]




>consensus_13479#0
CACGCGTCCGGGAATCGCTTGATTCCGATGAAGTTCTCCGGCGAAGGTCGACCGTTGTCG
GCGGCCAGCGCGGCCGCGATCTCGGCTTCCGACGACGTCGCCGACTCCATCGACGCGCTC
TACCGCAAGGATGAGGCCATGGCAGAGCTCAAGTCGGAGGTGATGGAGGCGCTGCAAAAG
GAGGTCAGGTCGCTCGATGACGACAGCTGGATGTTCGCCGCGCCCCGCTCCCGCATCAAC
CTCGTCTCTATGTCTGGTGGTTACCTACGCAAGCAGCAGGAAAAATTGGCTGACCTCGGT
CAAGCATCCAAGAAGACGAGGAATTTCTAGGAACTAGGTGTCTTCCAGGGAAGCCTCTGC
AAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTGTGAC
CCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCA
TGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGC
TTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGG
ATTTTCATTTTCCACCTCAAAGCAATGCATTTCACAGTGAAATTAAAAAAAAAA

consensusID : consensus_13479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 309
fasta sequence

                              [TTTTCTAGGAACTAGGGTGTTCTTTCCATGGGAAGCCTCTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATTTTCAAAAAAAAAAAAAAA]

[+] EMBL AU096763             [TTTTCTAGGAACTAGGGTGTTCTTTCCATGGGAAGCCTCTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATTTTCAAAAAAAAAAAAAAA]
[-] EMBL BI305720             [                                                                       ATATGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCATAACACTTCACCAGCATGTTCAGTTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATTTAAATGAATAATGTAGGCGGATTTTCATT                  ]
[-] EMBL BU673241             [                                                                         CTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATT                  ]
[-] EMBL CB967457             [                                                                         CTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATT                  ]
[-] EMBL CB966270             [                                                                         CTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATT                  ]
[-] EMBL CB964751             [                                                                         CTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGC ATCCTTATAAACCG TTATCTAAATGAAAAATGTAGGCGGATTTTCATT                  ]
[-] EMBL BI306515             [                                                                        ttTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGACAAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATGCAATCCTTATAAACCGTTTATTTAAATGAAAAATGTAGGCGGATTTTCATT                  ]




>consensus_13479#1
TTTTCTAGGAACTAGGGTGTTCTTTCCATGGGAAGCCTCTGCAAGTTTACAAGTCCAGAA
TTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTGTGACCCGGTGTCAATCCATTGC
GGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCTTTCATGCCATTGTAATGTAGAC
AAGAAAAAAATCAAAACACTTCACCAGCATGTTCAGCTAGGCTTAAAGCTCAGTACCATG
CAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATTTTCAAAAAA
AAAAAAAAA

consensusID : consensus_13479#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [NGATTCCGATGAGCTCTCCGGCGAGGTCGACCGTGTCGGCGGCCAGCGCGGGCGGATCTCGGCCTCCGACGACGTCCCGACTCCATCGACGCGCTCTACCGCAAGATGAGGCATGGCAGAGTCAAGTCGGAGGTGATGGAGGCGCTGANAAGGAGGTCAGTCGTCGATGACGCAGNTGGATGTTCGCGCGCCCGTCCCGATAACCTCGTCTCTATGCTGTGGTTACTACGAAGAGA]

[+] EMBL AU065889             [NGATTCCGATGAGCTCTCCGGCGAGGTCGACCGTGTCGGCGGCCAGCGCGGGCGGATCTCGGCCTCCGACGACGTCCCGACTCCATCGACGCGCTCTACCGCAAGATGAGGCATGGCAGAGTCAAGTCGGAGGTGATGGAGGCGCTGANAAGGAGGTCAGTCGTCGATGACGCAGNTGGATGTTCGCGCGCCCGTCCCGATAACCTCGTCTCTATGCTGTGGTTACTACGAAGAGA]




>consensus_13479#2
NGATTCCGATGAGCTCTCCGGCGAGGTCGACCGTGTCGGCGGCCAGCGCGGGCGGATCTC
GGCCTCCGACGACGTCCCGACTCCATCGACGCGCTCTACCGCAAGATGAGGCATGGCAGA
GTCAAGTCGGAGGTGATGGAGGCGCTGANAAGGAGGTCAGTCGTCGATGACGCAGNTGGA
TGTTCGCGCGCCCGTCCCGATAACCTCGTCTCTATGCTGTGGTTACTACGAAGAGA

consensusID : consensus_13479#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence

                              [TTCATGCCACTTGTAATGTAGACACAGAAAAAAATCTCAACACTTCTACCCGCATAGTTCAACTTAAGCTTTAAGCCTCAGTACCCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATT]

[-] EMBL BU672849             [TTCATGCCACTTGTAATGTAGACACAGAAAAAAATCTCAACACTTCTACCCGCATAGTTCAACTTAAGCTTTAAGCCTCAGTACCCATGCAATCCTTATAAACCGTTTATCTAAATGAAAAATGTAGGCGGATTTTCATT]




>consensus_13479#3
TTCATGCCACTTGTAATGTAGACACAGAAAAAAATCTCAACACTTCTACCCGCATAGTTC
AACTTAAGCTTTAAGCCTCAGTACCCATGCAATCCTTATAAACCGTTTATCTAAATGAAA
AATGTAGGCGGATTTTCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13479#1      ------------------------------------------------------------
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      CACGCGTCCGGGAATCGCTTGATTCCGATGAAGTTCTCCGGCGAAGGTCGACCGTTGTCG 60
consensus_13479#2      ------------------------------------------------------------
                                                                                   

consensus_13479#1      ------------------------------------------------------------
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      GCGGCCAGCGCGGCCGCGATCTCGGCTTCCGACGACGTCGCCGACTCCATCGACGCGCTC 120
consensus_13479#2      ------------------------------------------------------------
                                                                                   

consensus_13479#1      ------------------------------------------------------------
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      TACCGCAAGGATGAGGCCATGGCAGAGCTCAAGTCGGAGGTGATGGAGGCGCTGCAAAAG 180
consensus_13479#2      ------------------------------------------------------------
                                                                                   

consensus_13479#1      ------------------------------------------------------------
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      GAGGTCAGGTCGCTCGATGACGACAGCTGGATGTTCGCCGCGCCCCGCTCCCGCATCAAC 240
consensus_13479#2      ------------------------------------------------------------
                                                                                   

consensus_13479#1      ------------------------------------------------------------
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      CTCGTCTCTATGTCTGGTGGTTACCTACGCAAGCAGCAGGAAAAATTGGCTGACCTCGGT 300
consensus_13479#2      ------------------------------------------------------------
                                                                                   

consensus_13479#1      ----------------------TTTTCTAGGAACTAGGGTGTTCTTTCCATGGGAAGCCT 38
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      CAAGCATCCAAGAAGACGAGGAATTTCTAGGAACTAGG----TGTCTTCCAGGGAAGCCT 356
consensus_13479#2      ----------------------------------------------------NGATTCCG 8
                                                                                   

consensus_13479#1      CTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTG 98
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      CTGCAAGTTTACAAGTCCAGAATTCTACCAGGCATCTGTTTGAAGGGAATCAAGGAACTG 416
consensus_13479#2      ATGAGCTCTCCGGCGAGGTCGACCGTGTCGGCGGCCAGCGCGGGCGGATCTCGGCCTCCG 68
                                                                                   

consensus_13479#1      TGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCT 158
consensus_13479#3      ------------------------------------------------------------
consensus_13479#0      TGACCCGGTGTCAATCCATTGCGGTTGTGTCCTGCACCCAAATTTGGTATGAGTAATCCT 476
consensus_13479#2      A----CGACGTCCCGACTCCATCGACGCGCTCTACCGCAAGATGAGGCATGGCAGAG--- 121
                                                                                   

consensus_13479#1      TTCATGCCA-TTGTAATGTAGACA-AGAAAAAAATCAAAACACTTC-ACCAGCAT-GTTC 214
consensus_13479#3      TTCATGCCACTTGTAATGTAGACACAGAAAAAAATCTCAACACTTCTACCCGCATAGTTC 60
consensus_13479#0      TTCATGCCA-TTGTAATGTAGACA-AGAAAAAAATCAAAACACTTC-ACCAGCAT-GTTC 532
consensus_13479#2      -TCAAGTCGGAGGTGATGGAGGCGCTGANAAGGAGGTCAGTCGTCG-------ATGACGC 173
                        *** * *    ** *** ** *   ** **  *    *    *         **    *

consensus_13479#1      AGCT--AGGCTTAAAGCTCAGTACC-ATGCAATCCTTATAAACCGTTTATCTAAATGAAA 271
consensus_13479#3      AACTTAAGCTTTAAGCCTCAGTACCCATGCAATCCTTATAAACCGTTTATCTAAATGAAA 120
consensus_13479#0      AGCT--AGGCTTAAAGCTCAGTACC-ATGCAATCCTTATAAACCGTTTATCTAAATGAAA 589
consensus_13479#2      AGNTGGATGTTCGCGCGCCCGTCCCGATAACCTCGTCTCTATGCTGTGGTTACTACGAAG 233
                       *  *  *   *       * ** ** **    ** *    *  *  *  *    * *** 

consensus_13479#1      AATGTAGGCGGATTTTCATTTTCAAAAAAAAAAAAAAA---------------------- 309
consensus_13479#3      AATGTAGGCGGATTTTCATT---------------------------------------- 140
consensus_13479#0      AATGTAGGCGGATTTTCATTTTCCACCTCAAAGCAATGCATTTCACAGTGAAATTAAAAA 649
consensus_13479#2      AGA--------------------------------------------------------- 236
                       *                                                           

consensus_13479#1      -----
consensus_13479#3      -----
consensus_13479#0      AAAAA 654
consensus_13479#2      -----