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Oryza sativa
cluster # 13482 cluster # 13482       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13482#0 length = 1652 sequences # 12  
consensus_13482#1 length = 682 sequences # 1  

consensusID : consensus_13482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1652
fasta sequence
                              [CCTCGCCTCTGCTCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCCGGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTCTCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCTCTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTCCCTCCCTCCCTCGCTCCGGCGCCGCTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGACTCGGATCGAGCCGGTGGGGCGCGATGAAC-AGCCAGGGA-TTCGGTCCGGGCGGGAGCCCAAAGTCG-TTCCGCTAACCT--AGGGCGGACTTCGATCTCGAGTCCGGGATCGCCCGCAAGGGCTTACGCAAGCCCAAGAACCACGACGCCCCCGGTTTGCTCACCTCCACGCTGATGAAGATCCGGTACTTCTACGAGGCGCACCCCGTCGCGGTCGCCTTCATCCTGCTGTCCTTCGGGCTCAGCGTGCTGATCCTCCTGTCGGTGTACGAGACCCGGTTCAGGATGATGCGGGGTTCTTCGGGTGAGGTCGGGGAGTATCCGCTCCCGGAGCTCCGCAACCTTGTGATGGTGGCCGGGCATTCGATTTACACGAGCGAGAGCTGCGGGAAGATTGATCGCGAGGACTCTTGGTTCTTGGAGCCGTATCAGAAGCACCCCGGTCAGGCGGCCACGTTCTTGGCGCATATCAAGGAAGGCGTGGGTATCGCCGCGAGGGATGAGAAGGTGCTTCTGCTGTTCAGCGGCGGCGAGACGAGGAAAGATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGTTTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGT-GATAG-TTTTG-AAAACCT-CCT-ATT-TAGCGTTTG-CCGGTTTAGAGAAC-T-CACTGG-AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT-AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAAC-AATGTTCTCTCTCTGTTTTTTTTTAAAGATAAATGTTCTCCAAAAAAAGGGAAAAAAACTCGA]

[+] EMBL AK068396             [CCTCGCCTCTGCTCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCCGGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTCTCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCTCTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTCCCTCCCTCCCTCGCTCCGGCGCCGCTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGACTCGGATCGAGCCGGTGGGGCGCGATGAAC AGCCAGGGA TTCGGTCCGGGCGGGAGCCCCAAGTCG TTCCGCTACCCT  AGGGCGGACTTCGATCTCGAGTCCGGGATCGCCCGCAAGGGCTTACGCAAGCCCAAGAACCACGACGCCCCCGGTTTGCTCACCTCCACGCTGATGAAGATCCGGTACTTCTACGAGGCGCACCCCGTCGCGGTCGCCTTCATCCTGCTGTCCTTCGGGCTCAGCGTGCTGATCCTCCTGTCGGTGTACGAGACCCGGTTCAGGATGATGCGGGGTTCTTCGGGTGAGGTCGGGGAGTATCCGCTCCCGGAGCTCCGCAACCTTGTGATGGTGGCCGGGCATTCGATTTACACGAGCGAGAGCTGCGGGAAGATTGATCGCGAGGACTCTTGGTTCTTGGAGCCGTATCAGAAGCACCCCGGTCAGGCGGCCACGTTCTTGGCGCATATCAAGGAAGGCGTGGGTATCGCCGCGAGGGATGAGAAGGCGCTTCTGCTGTTCAGCGGCGGCGAGACGAGGAAAGATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGTTTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGT GATAG TTTTG AAAACCT CCT ATT TAGCGTTTG CCGGTTTAGAGAAC T CACTGG AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCACTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAAC AATGTTCTCTCTCTGTTTTTTTTTAAAGATAAATGTTCTC                       ]
[+] EMBL AU064636             [            TCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCCGGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTCTCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCTCTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTNCCTCCCTCCCTNGCTCCGGCGCCGCTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGACTCGGATCGAGCCGGTGGGGCGCGATGAAC AGCCAGGGA TTCGGTCCGGGCGGGAG CCAAAGTCG TTCCGTTAACCT  AGGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU065010             [            TCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCCGGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTCTCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCTCTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTCCCTCCCTCCCTCGCTCCGGCGCCGNTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGANTCGGATCGAGCCGGTGGGGCGCGATGAACAAGCCAGGGATTTGGGTCCGGGCGGGAGCCCAAAGTCG TTCCGTTAACCTTAAGGGCGGANTTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU064635             [            TCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCCGGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTCTCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCTCTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTCCCTCCCTCCCTCGCTCCGGCGCCGCTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGACTCGGATCGAGCCGGTGGGGCGCGATGAAC AAGCAGGGA TTCGGTCCGGGCGGGAGCCCAAAGTCGTTTCCG TAACCT  AGGGCGGANTTTGATCTTGAGTCCGGGATCGCCCG AAAGTTTAACGAAAGCCAAAGAA CANGACG GCCCGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C72043               [                                   nATCCTAATCCCCTCTCCATCCGCCGGCGGCCGACGCGGGGCCNCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTNTCCTTGCNGGAGCCCGGCCTCCTTCCCTGTCCGGCCTCCTCGCCCCGCCGGCAAGCNTCTNTCCTCGANTCGAACCGGAGGTATACCCCATTCCTGCNTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB655876             [                                                                                                                                                                                                                                                                                                                                                                 GGAGCCCCAAGTCG TTCCGCTACCCT  AGGGCGGACTTCGATCTCGAGTCCGGGATCGCCCGCAAGGGCTTACGCAAGCCCAAGAACCACGACGCCCCCGGTTTGCTCACCTCCACGCTGATGAAGATCCGGTACTTCTACGAGGCGCACCCCGTCGCGGTCGCCTTCATCCTGCTGTCCTTCGGGCTCAGCGTGCTGATCCTCCTGTCGGTGTACGAGACCCGGTTCAGGATGATGCGGGGTTCTTCGGGTGAGGTCGGGGAGTATCCGCTCCCGGAGCTCCGCAACCTTGTGATGGTGGCCGGGCATTCGATTTACACGAGCGAGAGCTGCGGGAAGATTGATCGCGAGGACTCTTGGTTCTTGGAGCCGTATCAGAAGCACCCCGGTCAGGCGGCCACGTTCTTGGCGCATATCAAGGAAGGCGTGGGTATCGCCGCGAGGGATGAGAAGGTGCTTCTGCTGTTCAGCGGCGGCGAGACGAGGAAAGATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGTTTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGT GATAG TTTTG AAAACCT CCT ATT TAGCGTTTG CCGGTTTAGAGAAC T CACTGG AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTANGTACCCCTGCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB655877             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGCTTCTGCTGTTCAGCGGCGGCGAGACGAGGAAAGATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGTTTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGT GATAG TTTTG AAAACCT CCT ATT TAGCGTTTG CCGGTTTAGAGAAC T CACTGG AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAACNAATG                                                           ]
[-] EMBL CB657997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGTTTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGT GATAG TTTTG AAAACCT CCT ATT TAGCGTTTG CCGGTTTAGAGAAC T CACTGG AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAAC AATGTTCTCTCTCTGTTTTTTTTTAAAGATA                                ]
[+] EMBL AU165410             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGTAAGGAGACGGGCATTCACCGAGGAGCATGCACGT GATAG TTTTG AAANCCT CCT ATT TAGCGTTTG CCGGTTTAGAGAAC T CACTGG AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGAaaaaaaa                                                                                                     ]
[-] EMBL CB657996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACTCACCGAGGAGCATGCACGT GATAG TTTTG AAAACCT CCT ATT TAGCGTTTG CCGGTTTAGAGAAC T CACTGG AAGTTACCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGACCCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGAGTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTACCGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAAC AAT TTATGTGTCTGTTTTTTTTTAAAGATAAATGTTCTCCAAAAAAAGGGAAAAAAACTCGA]
[+] EMBL AU164337             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tgcCACGTNGATAGTTTTTGAAAAACCTCCCTAATT TAGNGTTTGCCCGGTTTAGAGAAC TCCACTGG AAGTTNCCCGCAAAATATAACTGTTGTAAGCTATGATTTT AAGGAGGAAAGGTTTGCGCAATTGCACAGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGAaaaaaaa                                                                                                     ]
[+] EMBL AU164338             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GT GATAG TTTTG AAACCTTCCCT ATTCTACCGTTTG CCGGTTTAGNGAACTT CACTGGAAAGTTACCCCGAAAATATNACTGTTGTAAGCTATGATTTTAAAGGAGGAAAGGTTTGCGCAATNGCACAGATCTGCTCTTGGTNTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCNTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCNATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGAa                                                                                                           ]


>consensus_13482#0 CCTCGCCTCTGCTCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCC GGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTC TCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCT CTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTCC CTCCCTCCCTCGCTCCGGCGCCGCTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGAC TCGGATCGAGCCGGTGGGGCGCGATGAACAGCCAGGGATTCGGTCCGGGCGGGAGCCCAA AGTCGTTCCGCTAACCTAGGGCGGACTTCGATCTCGAGTCCGGGATCGCCCGCAAGGGCT TACGCAAGCCCAAGAACCACGACGCCCCCGGTTTGCTCACCTCCACGCTGATGAAGATCC GGTACTTCTACGAGGCGCACCCCGTCGCGGTCGCCTTCATCCTGCTGTCCTTCGGGCTCA GCGTGCTGATCCTCCTGTCGGTGTACGAGACCCGGTTCAGGATGATGCGGGGTTCTTCGG GTGAGGTCGGGGAGTATCCGCTCCCGGAGCTCCGCAACCTTGTGATGGTGGCCGGGCATT CGATTTACACGAGCGAGAGCTGCGGGAAGATTGATCGCGAGGACTCTTGGTTCTTGGAGC CGTATCAGAAGCACCCCGGTCAGGCGGCCACGTTCTTGGCGCATATCAAGGAAGGCGTGG GTATCGCCGCGAGGGATGAGAAGGTGCTTCTGCTGTTCAGCGGCGGCGAGACGAGGAAAG ATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGT TTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGTGATAGTT TTGAAAACCTCCTATTTAGCGTTTGCCGGTTTAGAGAACTCACTGGAAGTTACCCGCAAA ATATAACTGTTGTAAGCTATGATTTTAAGGAGGAAAGGTTTGCGCAATTGCACAGATCTG CTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAA GGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATG GATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCATTC CATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTT ACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACA ACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATG TGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTTTTT GTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTA CTAGGAAACTTGAAATTATTAGTGAAAACAATGTTCTCTCTCTGTTTTTTTTTAAAGATA AATGTTCTCCAAAAAAAGGGAAAAAAACTCGA



consensusID : consensus_13482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [TTTAAGCGCTCACCCGGTTTAAAGACCCCCCCTGGAAGTTCACCCCCAAACATAACGTGTGTAACGTATGGTTTTAGGAGGACAAGGTTTCTCCAATTCCCCAGGTCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCCTGGACACCTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCGGTTAGATCTCAGTTCCAGGAGGATCGTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCCTAAGAAGGATCCATTTCACCGTGCCCTTCCATATCCGAATGGTTGCCCTGAACTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGGCCCCATAGCTCGAAGGATATACGAACCTTGGGCTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTTTGAACTGGCAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCCCATTTACCTTAGTGAGATTGTTTTTTTGTAACGGTGTATATCCCATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAACAATGTTCTCTCTCTGTTTTTTTTTAAAGATAAATGTTCTCAATCTGCTGGAAAAAAAAAAAAA]

[-] EMBL CA762724             [TTTAAGCGCTCACCCGGTTTAAAGACCCCCCCTGGAAGTTCACCCCCAAACATAACGTGTGTAACGTATGGTTTTAGGAGGACAAGGTTTCTCCAATTCCCCAGGTCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCCTGGACACCTGACTGCAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCGGTTAGATCTCAGTTCCAGGAGGATCGTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCCTAAGAAGGATCCATTTCACCGTGCCCTTCCATATCCGAATGGTTGCCCTGAACTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCAGCTTCCTTGGGCCCCATAGCTCGAAGGATATACGAACCTTGGGCTATACAACCTTCTTTCATTGCCTCGGCTCTGAAGTTTGAACTGGCAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCCCATTTACCTTAGTGAGATTGTTTTTTTGTAACGGTGTATATCCCATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACTTGAAATTATTAGTGAAAACAATGTTCTCTCTCTGTTTTTTTTTAAAGATAAATGTTCTCAATCTGCTGGAAAAAAAAAAAAA]


>consensus_13482#1 TTTAAGCGCTCACCCGGTTTAAAGACCCCCCCTGGAAGTTCACCCCCAAACATAACGTGT GTAACGTATGGTTTTAGGAGGACAAGGTTTCTCCAATTCCCCAGGTCTGCTCTTGGATTC CCTGAAGGGAGATTCTTCTTCTTAGGTACCCCCTGGACACCTGACTGCAAGGGAGTCTGC TGTCAAGGGTGAAGCCGCGGTTAGATCTCAGTTCCAGGAGGATCGTTATGGATGCTTAGG TTCTCTTCATATGAAGAGGCCTAAGAAGGATCCATTTCACCGTGCCCTTCCATATCCGAA TGGTTGCCCTGAACTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGCCTTACCCTGGGCA GCTTCCTTGGGCCCCATAGCTCGAAGGATATACGAACCTTGGGCTATACAACCTTCTTTC ATTGCCTCGGCTCTGAAGTTTGAACTGGCAAAATAACTACTTGTGAAATGTGATGTATTC TTCCTGAATCCTGACTAAGACCCCATTTACCTTAGTGAGATTGTTTTTTTGTAACGGTGT ATATCCCATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCTGTACTAGGAAACT TGAAATTATTAGTGAAAACAATGTTCTCTCTCTGTTTTTTTTTAAAGATAAATGTTCTCA ATCTGCTGGAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13482#0      CCTCGCCTCTGCTCTCTTCCCCCGTTAAGGCAGGCGATCCTGATCCCCTCTCCATCCGCC 60
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      GGCGGCCGACGCGGGGGCGCGGAGGCGCGCACGCACGCACGGCGGTGTGGACGGCTCCTC 120
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      TCCTTGCCGGAGCCCGGCCTCCTTCCCTGTGCGGCCTCCTCGCCCCGCCGGCGAGCCTCT 180
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      CTGCTCGAATCGAACCGGAGGTATACCCCATTCCTGCCTCGTAGCCCTCTCTCTCCCTCC 240
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      CTCCCTCCCTCGCTCCGGCGCCGCTTCATGCGCCGGCGAGACCTGGATCGGGAGGAAGAC 300
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      TCGGATCGAGCCGGTGGGGCGCGATGAACAGCCAGGGATTCGGTCCGGGCGGGAGCCCAA 360
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      AGTCGTTCCGCTAACCTAGGGCGGACTTCGATCTCGAGTCCGGGATCGCCCGCAAGGGCT 420
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      TACGCAAGCCCAAGAACCACGACGCCCCCGGTTTGCTCACCTCCACGCTGATGAAGATCC 480
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      GGTACTTCTACGAGGCGCACCCCGTCGCGGTCGCCTTCATCCTGCTGTCCTTCGGGCTCA 540
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      GCGTGCTGATCCTCCTGTCGGTGTACGAGACCCGGTTCAGGATGATGCGGGGTTCTTCGG 600
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      GTGAGGTCGGGGAGTATCCGCTCCCGGAGCTCCGCAACCTTGTGATGGTGGCCGGGCATT 660
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      CGATTTACACGAGCGAGAGCTGCGGGAAGATTGATCGCGAGGACTCTTGGTTCTTGGAGC 720
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      CGTATCAGAAGCACCCCGGTCAGGCGGCCACGTTCTTGGCGCATATCAAGGAAGGCGTGG 780
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      GTATCGCCGCGAGGGATGAGAAGGTGCTTCTGCTGTTCAGCGGCGGCGAGACGAGGAAAG 840
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      ATGCGGGGCCGAGGAGCGAGGCTCAGAGCTACTGGACTATCGCGGATTCGAAAGGCTGGT 900
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      TTGGAAATGATGAAAGTGTAAGGAGACGGGCACTCACCGAGGAGCATGCACGTGATAGTT 960
consensus_13482#1      ------------------------------------------------------------
                                                                                   

consensus_13482#0      TTGAAAACCTCCTATTTAGCGTTTGCC-GGTTTAGAGAACTCAC-TGGAAGTTACCCGCA 1018
consensus_13482#1      -------------TTTAAGCGCTCACCCGGTTTAAAGACCCCCCCTGGAAGTTCACCCCC 47
                                     ** **** *  ** ****** *** * * * ********  ** * 

consensus_13482#0      AAATATAACTGTTGTAAGCTATGATTTTAAGGAGGAAAGGTTTGCGCAATTGCACAGATC 1078
consensus_13482#1      AAACATAACGTGTGTAACGTATGGTTTTAGGAGGACAAGGTTTCTCCAATTCCCCAGGTC 107
                       *** *****   *****  **** ***** *  *  *******   ***** * *** **

consensus_13482#0      TGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACAC-TGACTG 1137
consensus_13482#1      TGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCCTGGACACCTGACTG 167
                       *********************************************    **** ******

consensus_13482#0      CAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTT 1197
consensus_13482#1      CAAGGGAGTCTGCTGTCAAGGGTGAAGCCGCGGTTAGATCTCAGTTCCAGGAGGATCGTT 227
                       ******************************* ******************** **** **

consensus_13482#0      ATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTAAGAGGGATCCATTTCACCGTGCCA 1257
consensus_13482#1      ATGGATGCTTAGGTTCTCTTCATATGAAGAGGCCTAAGAAGGATCCATTTCACCGTGCCC 287
                       ********************************* ***** ******************* 

consensus_13482#0      TTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGC 1317
consensus_13482#1      TTCCATATCCGAATGGTTGCCCTGAACTGAAGGGTCTGTTCTCATACTGTGGTCTGGTGC 347
                       ************************* **********************************

consensus_13482#0      CTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTAT 1377
consensus_13482#1      CTTACCCTGGGCAGCTTCCTTGGGCCCCATAGCTCGAAGGATATACGAACCTTGGGCTAT 407
                       *********************** *** *************************** ****

consensus_13482#0      ACAACCTTCTTTCATTGCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAA 1437
consensus_13482#1      ACAACCTTCTTTCATTGCCTCGGCTCTGAAGTTTGAACTGGCAAAATAACTACTTGTGAA 467
                       ******************************** ******* *******************

consensus_13482#0      ATGTGATGTATTCTTCCTGAATCCTGACTAAGACCACATTTACATTAGTGAGATTGTTTT 1497
consensus_13482#1      ATGTGATGTATTCTTCCTGAATCCTGACTAAGACCCCATTTACCTTAGTGAGATTGTTTT 527
                       *********************************** ******* ****************

consensus_13482#0      TTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCT 1557
consensus_13482#1      TTTGTAACGGTGTATATCCCATGATCAATATATGTTTTTTCAGTGTGATTTGGCATCTCT 587
                       ****************** *****************************************

consensus_13482#0      GTACTAGGAAACTTGAAATTATTAGTGAAAACAATGTTCTCTCTCTGTTTTTTTTTAAAG 1617
consensus_13482#1      GTACTAGGAAACTTGAAATTATTAGTGAAAACAATGTTCTCTCTCTGTTTTTTTTTAAAG 647
                       ************************************************************

consensus_13482#0      ATAAATGTTCTCCAAAAAAAGGGAAAAAAACTCGA 1652
consensus_13482#1      ATAAATGTTCTCAATCTGCTGGAAAAAAAAAAAAA 682
                       ************ *      ** *******    *




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)