cluster # 13485

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Oryza sativa
cluster # 13485 cluster # 13485 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13485#0 length = 2302 sequences # 10

consensus_13485#1 length = 586 sequences # 3

consensusID : consensus_13485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2302
fasta sequence

                              [CGTTTCTTTGGGGAGACACAAGAAAGCGCAGCAAGCAAGCGCAGCGGAGGCACACGGATACTACTCCACGCATACCATACCACCACTTACCTACCGCTCCCCACATCTCTCCTCCTCCTCCCTTTTTCCTCTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTGAGCTTGCTCTGTGTGTGTGCGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGTTTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCACATGCATTGTCTTGGGGGCTTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTGATGACAATCCAAGACAAGTCTAGTGAGAAGGAGTCAGACAAGGTCATGGTCCATTTGGGTGTAAGCAAATCGAAGCGTGGCGATGAGAGCCACTCAGGATCATTCCGTTACATGGACAAGGATTTAGGATTCCAGTCAGCTGATGAAGGAGGCTCAGGAACATTTCGGCATAATTCAGCTCATGCAATAACTGCTCCTTCACCTTTGGTTGGCCTGCCAGAGTTCTCTTACCTAGGCTGGGGCCATTGGTTTACTTTGAGGGATCTGGAAGTTGCTACTAGCCGTTTTTCAAAGGATAACATTCTTGGTGAGGGTGGATATGGTGTAGTTTATCGTGGCCAACTGATCAATGGCACTCCTGTTGCTGTTAAGAAGCTTCTCAATAACCTAGGACAGGCCGAGAAGGAATTCAGAGTTGAAGTTGAGGCTATTGGTCATGTTCGCCACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGAGGGTACTCAAAGAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCTTGGGACAGCTAAAGCGCTTGCTTACTTGCATGAGGCAATTGAACCCAAAGTGGTGCACCGTGATATCAAATCCAGCAATATATTGATTGATGATGATTTTGATGCCAAAGTATCAGACTTTGGTTTAGCTAAACTTCTTGGTGCTGGCAAGAGTCATGTCACTACTAGGGTTATGGGAACCTTCGGCTACGTGGCACCAGAGTATGCAAACACTGGACTCTT-GAATGAAAAGAGTGACATTTACAGCTTTGGGGTAGTACTTCTAGAAGCAATTACAGGGAGGGATCCTGTTGACTATGGTCGTCCAGCGAATGAGGTAAATCTTGTTGACTGGCTAAAAATGATGGTTGCTAGCAGGCGATCAGAGGAGGTGGTGGATCCCACCATAGAGACCCGGCCTTCGACAAGAGCTCTCAAGCGTGCACTTTTAACTGCTCTGAGATGTGTGGATCCAGATTCAGAAAAGAGACCAAAGATGGGTCAAGTTGTGAGGATGCTGGAATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAAGCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGGGACAAC-AACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT-CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCGAATATTTGTGAATGATATATATTCCAATTGGAAAAATCTGCCCGTTTTGAAAAAACAAAAA]

[+] EMBL AK100396             [CGTTTCTTTGGGGAGACACAAGAAAGCGCAGCAAGCAAGCGCAGCGGAGGCACACGGATACTACTCCACGCATACCATACCACCACTTACCTACCGCTCCCCACATCTCTCCTCCTCCTCCCTTTTTCCTCTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTGAGCTTGCTCTGTGTGTGTGCGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGTTTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCACATGCATTGTCTTGGGGGCTTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTGATGACAATCCAAGACAAGTCTAGTGAGAAGGAGTCAGACAAGGTCATGGTCCATTTGGGTGTAAGCAAATCGAAGCGTGGCGATGAGAGCCACTCAGGATCATTCCGTTACATGGACAAGGATTTAGGATTCCAGTCAGCTGATGAAGGAGGCTCAGGAACATTTCGGCATAATTCAGCTCATGCAATAACTGCTCCTTCACCTTTGGTTGGCCTGCCAGAGTTCTCTTACCTAGGCTGGGGCCATTGGTTTACTTTGAGGGATCTGGAAGTTGCTACTAGCCGTTTTTCAAAGGATAACATTCTTGGTGAGGGTGGATATGGTGTAGTTTATCGTGGCCAACTGATCAATGGCACTCCTGTTGCTGTTAAGAAGCTTCTCAATAACCTAGGACAGGCCGAGAAGGAATTCAGAGTTGAAGTTGAGGCTATTGGTCATGTTCGCCACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGAGGGTACTCAAAGAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCTTGGGACAGCTAAAGCGCTTGCTTACTTGCATGAGGCAATTGAACCCAAAGTGGTGCACCGTGATATCAAATCCAGCAATATATTGATTGATGATGATTTTGATGCCAAAGTATCAGACTTTGGTTTAGCTAAACTTCTTGGTGCTGGCAAGAGTCATGTCACTACTAGGGTTATGGGAACCTTCGGCTACGTGGCACCAGAGTATGCAAACACTGGACTCTT GAATGAAAAGAGTGACATTTACAGCTTTGGGGTAGTACTTCTAGAAGCAATTACAGGGAGGGATCCTGTTGACTATGGTCGTCCAGCGAATGAGGTAAATCTTGTTGACTGGCTAAAAATGATGGTTGCTAGCAGGCGATCAGAGGAGGTGGTGGATCCCACCATAGAGACCCGGCCTTCGACAAGAGCTCTCAAGCGTGCACTTTTAACTGCTCTGAGATGTGTGGATCCAGATTCAGAAAAGAGACCAAAGATGGGTCAAGTTGTGAGGATGCTGGAATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAAGCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGGGACAAC AACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCC TTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCG                                                             ]
[+] EMBL AU063388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTGATGACAATCCAAGACAAGTCTAGTGAGAAGGAGTCAGACAAGGTCATGGTCCATTTGGGTGTAAGCAAATCGAAGCGTGGCNATGAGAGCCACTCAGGATCATTCCGTTACATGGACAAGGATTTAGGATTCCAGTCAGCTGATGAAGGAGGCTCAGGAACATTTCGGCATAATTCAGCTCATGCAATAACTNCTCCTTCACCTTTGGTTGGCCT NCAGAGTTCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU063490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTNAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTGATGACAATCCAAGACAAGTCTAGTGAGAAGGAGTCAGACAAGGTCATGGTCCATTTGGGTGTAAGCAAATCGAAGCGTGGCGATGAGAGCCACTCAGGATCATTCCGTTACATGGACAAGGATTTAGGATTCCAGTCAGCTGATGAAGGAGGCTCAGGAACATTTCGGCATAATTCAGCTCATGCAATAACTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK059381             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTTTATCGTGGCCAACTGATCAATGGCACTCCTGTTGCTGTTAAGAAGCTTCTCAATAACCTAGGACAGGCCGAGAAGGAATTCAGAGTTGAAGTTGAGGCTATTGGTCATGTTCGCCACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGAGGGTACTCAAAGAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCTTGGGACAGCTAAAGCGCTTGCTTACTTGCATGAGGCAATTGAACCCAAAGTGGTGCACCGTGATATCAAATCCAGCAATATATTGATTGATGATGATTTTGATGCCAAAGTATCAGACTTTGGTTTAGCTAAACTTCTTGGTGCTGGCAAGAGTCATGTCACTACTAGGGTTATGGGAACCTTCGGCTACGTGGCACCAGAGTATGCAAACACTGGACTCTT GAATGAAAAGAGTGACATTTACAGCTTTGGGGTAGTACTTCTAGAAGCAATTACAGGGAGGGATCCTGTTGACTATGGTCGTCCAGCGAATGAGGTAAATCTTGTTGACTGGCTAAAAATGATGGTTGCTAGCAGGCGATCAGAGGAGGTGGTGGATCCCACCATAGAGACCCGGCCTTCGACAAGAGCTCTCAAGCGTGCACTTTTAACTGCTCTGAGATGTGTGGATCCAGATTCAGAAAAGAGACCAAAGATGGGTCAAGTTGTGAGGATGCTGGAATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAAGCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGGGACAAC AACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATAT                                                                                                                                                           ]
[+] EMBL C22359               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGGAGGGTACTCAAAGAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCTTGGGACAGCTAAAGCGCTTGCTTACTTGCATGAGGCAATTGAACCCAAAGTGGTGCACCGTGATATCAAATCCAGCAATATATTGATTGATGATGATTTTGATGCCAAAGTATCAGACTTTGGTTTAGCTAAACTTCTTGGTGCTGGCAAGAGTCATGTCACTACTAGGGTTATGGGAACCTTCGGCTACGTGGCACCAGAGTATGCAAACACTGGACTCTTGGAATGAAAAGAGTGACATTTACAGCTTTGGGGTAGTACTTCTAGAAGCAATTACAGGGAGGGATCCTGTTGACTATGGTCGTCCAGCGAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB638866             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAAAGATGGGTCAAGTTGTGAGGATGCTGGAATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAAGCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGGGACAAC AACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCGAATATTTGTGAATGATATATAT                                       ]
[+] EMBL C22360               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCAAAGGGACAAC AACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTTCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCGAATATTTGTGAATGATATATATTCCAATTGGAAAAA                         ]
[-] EMBL CF319643             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACAACAAACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGTCCCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACACATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCGAATATTTGTGAATGATATATATTCCAATTGGAAGCCTCTGCCCGTTTTGAAAAAACAAAAA]
[+] EMBL AU092979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGCCTCATCTTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCGAATATTTGTGAAaaaa                                             ]
[+] EMBL AU093067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTCCAAATGAGAACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGT CCCCCCTCTGTTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATNCAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTTATTTGTANACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACTTAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCCGAATATTTGTGAAaaaa                                             ]




>consensus_13485#0
CGTTTCTTTGGGGAGACACAAGAAAGCGCAGCAAGCAAGCGCAGCGGAGGCACACGGATA
CTACTCCACGCATACCATACCACCACTTACCTACCGCTCCCCACATCTCTCCTCCTCCTC
CCTTTTTCCTCTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTG
AGCTTGCTCTGTGTGTGTGCGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGT
TTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCT
GCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACA
TTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTC
TTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCACATGCATTGTCTTGGGGGC
TTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGT
TAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAA
GGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTGAT
GACAATCCAAGACAAGTCTAGTGAGAAGGAGTCAGACAAGGTCATGGTCCATTTGGGTGT
AAGCAAATCGAAGCGTGGCGATGAGAGCCACTCAGGATCATTCCGTTACATGGACAAGGA
TTTAGGATTCCAGTCAGCTGATGAAGGAGGCTCAGGAACATTTCGGCATAATTCAGCTCA
TGCAATAACTGCTCCTTCACCTTTGGTTGGCCTGCCAGAGTTCTCTTACCTAGGCTGGGG
CCATTGGTTTACTTTGAGGGATCTGGAAGTTGCTACTAGCCGTTTTTCAAAGGATAACAT
TCTTGGTGAGGGTGGATATGGTGTAGTTTATCGTGGCCAACTGATCAATGGCACTCCTGT
TGCTGTTAAGAAGCTTCTCAATAACCTAGGACAGGCCGAGAAGGAATTCAGAGTTGAAGT
TGAGGCTATTGGTCATGTTCGCCACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGA
GGGTACTCAAAGAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCT
TCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCT
TGGGACAGCTAAAGCGCTTGCTTACTTGCATGAGGCAATTGAACCCAAAGTGGTGCACCG
TGATATCAAATCCAGCAATATATTGATTGATGATGATTTTGATGCCAAAGTATCAGACTT
TGGTTTAGCTAAACTTCTTGGTGCTGGCAAGAGTCATGTCACTACTAGGGTTATGGGAAC
CTTCGGCTACGTGGCACCAGAGTATGCAAACACTGGACTCTTGAATGAAAAGAGTGACAT
TTACAGCTTTGGGGTAGTACTTCTAGAAGCAATTACAGGGAGGGATCCTGTTGACTATGG
TCGTCCAGCGAATGAGGTAAATCTTGTTGACTGGCTAAAAATGATGGTTGCTAGCAGGCG
ATCAGAGGAGGTGGTGGATCCCACCATAGAGACCCGGCCTTCGACAAGAGCTCTCAAGCG
TGCACTTTTAACTGCTCTGAGATGTGTGGATCCAGATTCAGAAAAGAGACCAAAGATGGG
TCAAGTTGTGAGGATGCTGGAATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAA
GCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGGGACAACAACTCCGACACGGA
CAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGA
ACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGTCCCCCCTCTG
TTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAG
ACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTT
ATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACT
TAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCAT
TATGAATACTGGTCGAACCCGAATATTTGTGAATGATATATATTCCAATTGGAAAAATCT
GCCCGTTTTGAAAAAACAAAAA

consensusID : consensus_13485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 586
fasta sequence

                              [CATGACTGAAGGAGTAGAAAACCGCTCCCCACATCTCTCCTCCTCCTCCCTTTTTCCACTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTGAGCTTGCTCTGTGTGTGTGC-GTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGTTTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCATATGCATTGTCTTGGGGGCTTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTG]

[+] EMBL CF319642             [CATGACTGAAGGAGTAGAAAACCGCTCCCCACATCTCTCCTCCTCCTCCCTTTTTCCACTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTGAGCTTGCTCTGTGTGTGTGC GTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGTTTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCATATGCATTGTCTTGGGGGCTTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTG]
[+] EMBL AU181517             [                                                                                                                         TGTGTGCAGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGTTTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCATATGCATTGTCTTGGGGGCTTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGTGGAGCAAG                                      ]
[+] EMBL CB638865             [                                                                                                                                                                                                            TGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCACGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCATATGCATTGTCTTGGGGGCTTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACAGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCC                                                                     ]




>consensus_13485#1
CATGACTGAAGGAGTAGAAAACCGCTCCCCACATCTCTCCTCCTCCTCCCTTTTTCCACT
CCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTGAGCTTGCTCTGT
GTGTGTGCGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGTTTTGTGTAGCTT
CGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAG
GAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACATTCCGCTATGGA
GGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTCTTCGCCAACTGG
CCCTTTGCATCTCAAAGTATGGGAGGTCATATGCATTGTCTTGGGGGCTTTCATGGTGGT
CATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGTTAGACGGGCTTC
GGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAAGGAAGTGAGGGT
GGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13485#0      CGTTTCTTTGGGGAGACACAAGAAAGCGCAGCAAGCAAGCGCAGCGGAGGCACACGGATA 60
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      CTACTCCACGCATACCATACCACCACTTACCTACCGCTCCCCACATCTCTCCTCCTCCTC 120
consensus_13485#1      ------------CATGACTGAAGGAGTAGAAAACCGCTCCCCACATCTCTCCTCCTCCTC 48
                                    *  *    *  * *     ****************************

consensus_13485#0      CCTTTTTCCTCTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTG 180
consensus_13485#1      CCTTTTTCCACTCCTCTTCTCTCCTCACCTCCCAAATCTGAAGGAATCCGCCATTCTCTG 108
                       ********* **************************************************

consensus_13485#0      AGCTTGCTCTGTGTGTGTGCGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGT 240
consensus_13485#1      AGCTTGCTCTGTGTGTGTGCGTGTGTGGAGTTCTTTCTTTGGTTGGAGAGGAGGTGATGT 168
                       ************************************************************

consensus_13485#0      TTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCT 300
consensus_13485#1      TTTGTGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCT 228
                       ************************************************************

consensus_13485#0      GCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACA 360
consensus_13485#1      GCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGGAGCGAAGCATTGACA 288
                       ************************************************************

consensus_13485#0      TTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTC 420
consensus_13485#1      TTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATCGCCAAGTCTGAAAGATCATCTCTC 348
                       ************************************************************

consensus_13485#0      TTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCACATGCATTGTCTTGGGGGC 480
consensus_13485#1      TTCGCCAACTGGCCCTTTGCATCTCAAAGTATGGGAGGTCATATGCATTGTCTTGGGGGC 408
                       ***************************************** ******************

consensus_13485#0      TTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGT 540
consensus_13485#1      TTTCATGGTGGTCATCTTCTTTGTAACCGTGTGGCTCACGATCCGGAGTCGGAAGAGGGT 468
                       ************************************************************

consensus_13485#0      TAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAA 600
consensus_13485#1      TAGACGGGCTTCGGCAAATATCCCAATCACCCAAATCCCTGCCATTTCCAAGGAAATCAA 528
                       ************************************************************

consensus_13485#0      GGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTGAT 660
consensus_13485#1      GGAAGTGAGGGTGGAGCAAGTCCCAACAAGCGATTTTGCAGCACATGATGGAGTCCTG-- 586
                       **********************************************************  

consensus_13485#0      GACAATCCAAGACAAGTCTAGTGAGAAGGAGTCAGACAAGGTCATGGTCCATTTGGGTGT 720
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      AAGCAAATCGAAGCGTGGCGATGAGAGCCACTCAGGATCATTCCGTTACATGGACAAGGA 780
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TTTAGGATTCCAGTCAGCTGATGAAGGAGGCTCAGGAACATTTCGGCATAATTCAGCTCA 840
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGCAATAACTGCTCCTTCACCTTTGGTTGGCCTGCCAGAGTTCTCTTACCTAGGCTGGGG 900
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      CCATTGGTTTACTTTGAGGGATCTGGAAGTTGCTACTAGCCGTTTTTCAAAGGATAACAT 960
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TCTTGGTGAGGGTGGATATGGTGTAGTTTATCGTGGCCAACTGATCAATGGCACTCCTGT 1020
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGCTGTTAAGAAGCTTCTCAATAACCTAGGACAGGCCGAGAAGGAATTCAGAGTTGAAGT 1080
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGAGGCTATTGGTCATGTTCGCCACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGA 1140
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      GGGTACTCAAAGAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCT 1200
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCT 1260
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGGGACAGCTAAAGCGCTTGCTTACTTGCATGAGGCAATTGAACCCAAAGTGGTGCACCG 1320
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGATATCAAATCCAGCAATATATTGATTGATGATGATTTTGATGCCAAAGTATCAGACTT 1380
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGGTTTAGCTAAACTTCTTGGTGCTGGCAAGAGTCATGTCACTACTAGGGTTATGGGAAC 1440
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      CTTCGGCTACGTGGCACCAGAGTATGCAAACACTGGACTCTTGAATGAAAAGAGTGACAT 1500
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TTACAGCTTTGGGGTAGTACTTCTAGAAGCAATTACAGGGAGGGATCCTGTTGACTATGG 1560
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TCGTCCAGCGAATGAGGTAAATCTTGTTGACTGGCTAAAAATGATGGTTGCTAGCAGGCG 1620
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      ATCAGAGGAGGTGGTGGATCCCACCATAGAGACCCGGCCTTCGACAAGAGCTCTCAAGCG 1680
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TGCACTTTTAACTGCTCTGAGATGTGTGGATCCAGATTCAGAAAAGAGACCAAAGATGGG 1740
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TCAAGTTGTGAGGATGCTGGAATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAA 1800
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      GCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGGGACAACAACTCCGACACGGA 1860
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      CAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGA 1920
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      ACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGTCCCCCCTCTG 1980
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TTTCTGCTGACGAATTGGTAACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAG 2040
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      ACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTGGCTGTAACGGTTTATGATTT 2100
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      ATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACT 2160
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCAT 2220
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      TATGAATACTGGTCGAACCCGAATATTTGTGAATGATATATATTCCAATTGGAAAAATCT 2280
consensus_13485#1      ------------------------------------------------------------
                                                                                   

consensus_13485#0      GCCCGTTTTGAAAAAACAAAAA 2302
consensus_13485#1      ----------------------