These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 3012 fasta sequence [CGCCATTTCGGATTCCCCACCCGACGAGTCTCCGACCACTTCCCACACCGGCGCCTCCACGCCGAGATCTCCTTCCCTCTCCACCGCCGGCGACCGCCGCGGCGCGGCGAGGCCCTCGGGGTCTAGGGTTTTGTACTCAGATGCGTCCCCTCCTCGCCTTCGCGGCGGTATGCGCCCTTCTCGTGGCTGCCGCAGCGCCGGCGGCCGCGGAGGAGGAGAAGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTTATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGA-CTGGTATGTTGGGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAAAGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAATCTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCATGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTACCCGAGGACAGGAGAATAT-GGATGTGTTAAACAATCTAAACAGCACAGATGCTGGGAACAACTCTAGTTTAAGTACTACAACAGAGAATGCATCACATGTTCAGAGAAGGTTGCTTCAAACAGATGAGAAAAGTAATCAAGCAGGAAGCTCAGAAACTGATGCAAGTGATACCGGAACAGCAAAAGCAGCTACTGTTGAAAATAGCGAGCCTCTAGAGGCTGATGCTGATGCATCATTTAATTTGTTTCGGGATGTAGAAGATCTGCCTGATGAGTACAATTACGATTATGGTGACTACGTTGATGAAACCATGTGGGGAGACGAGGACTGGAAAGAACAACAACATGAAAAGGCAGAAGATTATGTGAGCATAGATGCTCACATCTTGTCCACCCCAGTGATTGCAGATATTGACAGAGATGGCATACAAGAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAAATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAG--ATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCTAAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCAAGTGGCTGTGCAGATGTTGTTGACATTGGAGAGACCTCGTACAGTATGGTTTTGGCTGATAATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAA-CCAGGCAAGCAGCGGATGAAGCTT-CCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCT-GAAATGGCTCGTGCTTCTTCC-AATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACATCTTGAGAATTTTAGCCCCAGATATGCTATCAATCT] [+] EMBL AK067902 [CGCCATTTCGGATTCCCCACCCGACGAGTCTCCGACCACTTCCCACACCGGCGCCTCCACGCCGAGATCTCCTTCCCTCTCCACCGCCGGCGACCGCCGCGGCGCGGCGAGGCCCTCGGGGTCTAGGGTTTTGTACTCAGATGCGTCCCCTCCTCGCCTTCGCGGCGGTATGCGCCCTTCTCGTGGCTGCCGCAGCGCCGGCGGCCGCGGAGGAGGAGAAGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTTATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGA CTGGTATGTTGGGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAAAGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAATCTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCATGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTACCCGAGGACAGGAGAATAT GGATGTGTTAAACAATCTAAACAGCACAGATGCTGGGAACAACTCTAGTTTAAGTACTACAACAGAGAATGCATCACATGTTCAGAGAAGGTTGCTTCAAACAGATGAGAAAAGTAATCAAGCAGGAAGCTCAGAAACTGATGCAAGTGATACCGGAACAGCAAAAGCAGCTACTGTTGAAAATAGCGAGCCTCTAGAGGCTGATGCTGATGCATCATTTAATTTGTTTCGGGATGTAGAAGATCTGCCTGATGAGTACAATTACGATTATGGTGACTACGTTGATGAAACCATGTGGGGAGACGAGGACTGGAAAGAACAACAACATGAAAAGGCAGAAGATTATGTGAGCATAGATGCTCACATCTTGTCCACCCCAGTGATTGCAGATATTGACAGAGATGGCATACAAGAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAAATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAG ATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCTAAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCAAGTGGCTGTGCAGATGTTGTTGACATTGGAGAGACCTCGTACAGTATGGTTTTGGCTGATAATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAA CCAGGCAAGCAGCGGATGAAGCTT CCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCT GAAATGGCTCGTGCTTCTTCC AATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACATCTTGAGAATTTTAGCCCCAGATATGCTATCAATCT] [+] EMBL AU088713 [ AGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGGTATATGATGATGGACNAGCTAGAAGGACCTCGTAAGAAGGTACACAAAGANCTGGTATGTTtg ] [+] EMBL AU076308 [ AGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTTATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGA CTGGTATGTTGGGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAAAGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAATCTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCATGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTANCCGAGGACAGGAGAATATGGGATGTGTTAAACAATCTAAACcag ] [+] EMBL AU181047 [ GCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATAT ] [+] EMBL CB621184 [ GGCACATAAAAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACCAGAACATCTAAAGGCGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAAATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGGGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCTAAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCAAGTGGCTGTGCAGATGTT ] [+] EMBL OSC103181 [ GTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAA ] [+] EMBL AK104830 [ GATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAA CCAGGCAAGCAGCGGATGAAGCTT CCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCT GAAATGGCTCGTGCTTCTTCC AATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACATCTTGAGAA ] [-] EMBL CB621185 [ CCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAA CCAGGCAAGCAGCGGATGAAGCTT CCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCT GAAATGGCTCGTGCTTCTTCC AATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGGTCCTGGTTTAAC ] [+] EMBL AU076307 [ ACTCTACTTGNCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTAT ATGAACCCAGGCAAGCAGCGGATGAAGCTTCCCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCT GAAATGGCTCGTGCTTCTTCC AATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCaaaaaaaaa ] [+] EMBL BI810130 [ CTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCT GAAATGGCTCGTGCTTCTTCC AATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAA CAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATG ATTTACACAAGGAACTGGCAGCTGTCTGGTCCTGGTTTAACATCTTGAGAATTTTAGCCCCcaaaaaaa ] [+] EMBL AU088712 [ ACATGCATTATTACAAGCTTCTGGAAATGGCTCGTGCTNCTTCCAAATGCTTGGGATGTTTAGCGTNCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCaaaaaaaaa ] consensusID : consensus_13487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence [ATGGTTNACAAAAACGGGTTCTACTTCTNTGACGAGTTCTCGCTCNCCTTCCACATGCATTNTTACAAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGNCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCNGGATATCCAATCNCCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU161152 [ATGGTTNACAAAAACGGGTTCTACTTCTNTGACGAGTTCTCGCTCNCCTTCCACATGCATTNTTACAAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGNCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCNGGATATCCAATCNCCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGAAGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13487#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [CCGCGGACGNGNTNTNGNGCTGATAATNTTGATTNNAGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATNTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGNGAAAGGCGCATTGTGGGTTAATGCAGCTTATANTGAACCAGGCAAGCAGCGGATNAAGGTTCCCACNAGTTCCTGTGNGAACCACAGG] [+] EMBL AU063224 [CCGCGGACGNGNTNTNGNGCTGATAATNTTGATTNNAGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATNTTAAACACGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGNGAAAGGCGCATTGTGGGTTAATGCAGCTTATANTGAACCAGGCAAGCAGCGGATNAAGGTTCCCACNAGTTCCTGTGNGAACCACAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13487#0 CGCCATTTCGGATTCCCCACCCGACGAGTCTCCGACCACTTCCCACACCGGCGCCTCCAC 60 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GCCGAGATCTCCTTCCCTCTCCACCGCCGGCGACCGCCGCGGCGCGGCGAGGCCCTCGGG 120 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GTCTAGGGTTTTGTACTCAGATGCGTCCCCTCCTCGCCTTCGCGGCGGTATGCGCCCTTC 180 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TCGTGGCTGCCGCAGCGCCGGCGGCCGCGGAGGAGGAGAAGGCGAACAAGTTCCGGCAGC 240 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGA 300 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATG 360 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCAT 420 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTG 480 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGA 540 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTT 600 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGACTGGTATGTTG 660 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAA 720 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAAT 780 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCA 840 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTACCCGAGGACAGG 900 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AGAATATGGATGTGTTAAACAATCTAAACAGCACAGATGCTGGGAACAACTCTAGTTTAA 960 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GTACTACAACAGAGAATGCATCACATGTTCAGAGAAGGTTGCTTCAAACAGATGAGAAAA 1020 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GTAATCAAGCAGGAAGCTCAGAAACTGATGCAAGTGATACCGGAACAGCAAAAGCAGCTA 1080 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CTGTTGAAAATAGCGAGCCTCTAGAGGCTGATGCTGATGCATCATTTAATTTGTTTCGGG 1140 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ATGTAGAAGATCTGCCTGATGAGTACAATTACGATTATGGTGACTACGTTGATGAAACCA 1200 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TGTGGGGAGACGAGGACTGGAAAGAACAACAACATGAAAAGGCAGAAGATTATGTGAGCA 1260 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TAGATGCTCACATCTTGTCCACCCCAGTGATTGCAGATATTGACAGAGATGGCATACAAG 1320 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACCAGAACATC 1380 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTA 1440 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAA 1500 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATT 1560 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGG 1620 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATC 1680 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGG 1740 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCT 1800 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGA 1860 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACG 1920 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCT 1980 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCA 2040 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AGTGGCTGTGCAGATGTTGTTGACATTGGAGAGACCTCGTACAGTATGGTTTTGGCTGAT 2100 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTC 2160 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 TGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGA 2220 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGA 2280 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 ACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTAC 2340 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGG 2400 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 AATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAACCAGGCAAGCAG 2460 consensus_13487#1 ------------------------------------------------------------ consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 CGGATGAAGCTTCCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTT 2520 consensus_13487#1 ------------------------------------------------------ATGGTT 6 consensus_13487#2 ------------------------------------------------------------ consensus_13487#0 GACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTAC 2580 consensus_13487#1 NACAAAAACGGGTTCTACTTCTNTGACGAGTTCTCGCTCNCCTTCCACATGCATTNTTAC 66 consensus_13487#2 -------------------------------CCGCGGACGNGNTNTNGNGCTGATAATNT 29 * ** * * * * consensus_13487#0 AAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATC 2640 consensus_13487#1 AAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATC 126 consensus_13487#2 TGATTNNAGAGATGAC-----CTCGATCTTATTGTTACTACCATGAATGGCAATGTC-TT 83 * ** *** * ** ** ** ** * * * * **** * consensus_13487#0 CTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTT 2700 consensus_13487#1 CTGCGNCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGATTAGTGATTT 186 consensus_13487#2 CTGCTTCTCCACTCC--CTCTCCGC-ACCATC-CACTTAAGGAATGGAGATCATCAAACC 139 **** * ** * ***** ***** * ******* *** * * consensus_13487#0 GCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCAGGAT 2760 consensus_13487#1 GCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATATTAGCNGGAT 246 consensus_13487#2 AGGGAA-GAAACAAT-GCTGCATATCGTTACAACCGTGAAGGTATTTATNTTAAACACGG 197 * ***** * * * ** * ** * ** ** *** consensus_13487#0 ATCCA--ATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTG 2818 consensus_13487#1 ATCCA--ATCNCCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGCTCAATCTG 304 consensus_13487#2 TTCCAGAACATTCCGTGACGAAGAGGGCAAGCAT--TTCTGGGTAGAGTTTGAGATTGTG 255 **** * ** *** * ** * *** * *** * * * * * ** consensus_13487#0 CACAG--AAAAAACCCCTCACGATGCT---GCATCCCATCAGTTAGCTAGTTCGGGAAGT 2873 consensus_13487#1 CACAG--AAAAAACCCCTCACGATGCT---GCATCCCATCAGTTAGCTAGTTCGGGAAGT 359 consensus_13487#2 GACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACTT 315 *** * * *** * * ** * ** * * * * * * * consensus_13487#0 ACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGA 2933 consensus_13487#1 ACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTATGA 419 consensus_13487#2 GTCCCTGGGAATTAT-CAAGGNGAAA---GGCGCATTGTGGGTTAATGC--AGCTTATAN 369 ** * * ** *** *** * * ** * * ** * * ***** consensus_13487#0 T-ATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACATCTTGAGAATTTTAGC 2992 consensus_13487#1 T-ATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACAAAAAAAAAAAAAAAAA 478 consensus_13487#2 TGAACCAGGCAAGCAGCGGATNAAGGTTCCCACNAGTTCCTGTGNGAACCACAGG----- 424 * * * **** * * * ** * * * * consensus_13487#0 CCCAGATATGCTATCAATCT 3012 consensus_13487#1 AAAAAAAAAA---------- 488 consensus_13487#2 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||