These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2379 fasta sequence [AACCCTACCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATGGGTTGCTTTTGGCACCACAGTCTGGAGAGCCACATGATGCTCGTGTGTACAAGCTTGAGACTGATGCATGTTACCACAAGCCTGAGGCATCAAGTGATAAGAAGAAAGATAAATTGAAGAAATCAGTAGTGCCAGTAACCAAGTTATCTTCCCCTGAGAATGAAGAGCAGACATCGGATCCTCTTGGTAGAGCTACTGTTGCGTCTGTCCTTTGGGAGTCCATCCAGGCACGCACAAAGTTAATTGAAATCCAGATTGTTAAGGGACTGTTTTGCAAAGATTCGGAACACGCTGAAGGTGTTGGACTCTTCATGGCC-GTTAAAAGGCCTAAAGAACTTGGGATAAGGAAATTGGATGTGGTCACTGACAATGAAGCAAACTACAATGTTATGATCGGCAAAAGGGATTTGAGCAAGAGTAGCAGTCCTGAAACCTCGATGGCATTTATCCAAGCTGCGAAGGAATACGACATCTGCAAGTGCAGGAGAGAGCCAAGGGAAATGATAAGCCATGTGAATGACCTCGCCAAGGAAGCACACACCAAAAGCACTGACATGTTGGATCTTAGAGAGATCATTGAGCGCAAGTCTCCTCAATTTTGGGGAATGCCATTTGTGCGCATCAAGCAAGATGATTCTTCTATAAAAGCAAAATTAGGAGACTCGAAGGTCAGCGACACACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC-TGACCA--C-AGAGCACACGTACTTAT-CAATCACA-AGGGTTGCA-TTCCGC-ATTTTACCGGTAGCAAGTGCTTG-ATCGTTGCTTATGAC-AGTCCACCAGAGTTGATCCAG-TA-TGAAAACAATC-AAGATTC-TT--CAGGAGT-TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA-CTG-ACA-C-AACC-AAAGAAGTGGACCCATTCCTTTCT-TTATTTTTCCATCACCCTGGCCGCA-AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT-AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG-AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA-CCTTGGGAAATATCATGCACTTGTTACAGGCTCATTGACCTTTCACCTGATTGTGTATTCTGGCGCGAAGTATTTTGGGCCTCCGATTTTGTCGAGACTTAATGCATCCGTTTTGGGGTGGCCT] [+] EMBL CB625988 [AACCCTCCCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGATACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATG ] [+] EMBL CB625964 [AACCCTAGCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGNAGTACATTTTTTTGACCAT ] [+] EMBL CB625963 [AACCCTACCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGATACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGAT ] [+] EMBL CB628197 [ agCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGCCTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGGGGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCGAATCCTCTCCCAAAAAACCG AGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGGAGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGATCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTCGTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCGCAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAAGCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAAAATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCCTATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACA ] [+] EMBL CF196880 [ CACAAGATGAATCATACAATTCATCACAAGTTTCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACAATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGATTAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATGGGTTGCTTTTGGCACCACAGTCTGGAGAGCCACATGATGCTCGTGTGTACAAGCTTGAGACTGATGCATGTTACCACAAGCCTGAGGCATCAAGTGATAAGAAGAAAGATAAATTGAAGAAATCAGTAGTGCCAGTAACCAAGTTATCTTCCCCTGAGAATGAAGAGCAGACATCGGATCCTCTTGGTAGAGCTACTGTTGCGTCTGTCCTTTGGGAGTCCATCCAGGCACGCACAAAGTTAATTGAAATCCAGATTGTTAAGGGACTGTTTTGCAAAGATTCGGAACACGCTGAAGGTGTTGGACTCTTCATGGCC GTTAAAAGGCC ] [+] EMBL CB634565 [ GAACACGCTGAAGGTGTTGGACTCTTCATGGCCAGTTAAAAGGCCTAAAGAACTTGGGATAAGGAAATTGGATGTGGTCACTGACAATGAAGCAAACTACAATGTTATGATCGGCAAAAGGGATTTGAGCAAGAGTAGCAGTCCTGAAACCTCGATGGCATTTATCCAAGCTGCGAAGGAATACGACATCTGCAAGTGCAGGAGAGAGCCAAGGGAAATGATAAGCCATGTGAATGACCTCGCCAAGGAAGCACACACCAAAAGCACTGACATGTTGGATCTTAGAGAGATCATTGAGCGCAAGTCTCCTCAATTTTGGGGAATGCCATTTGTGCGCATCAAGCAAGATGATTCTTCTATAAAAGCAAAATTAGGAGACTCGAAGGTCAGCGACACACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA ] [-] EMBL CB628198 [ TAGGAGACTCGAAGGTCAGCGACACACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC AAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA CGTGGGGAAATATCATGCACTTGTTAC ] [-] EMBL CB634566 [ ATGCTTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGTCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC AAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACC CCTTGGGAAATATCATGCACTTG ] [-] EMBL CB625965 [ TCTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGAATCTGGAGCCAATGTTTCCCAGCATTCTATTCC TGACCA C AGAGCACACGTACTTAT CAATCACA AGGGTTGCA TTCCGC ATTTTACCGGTAGCAAGTGCTTG ATCGTTGCTTATGAC AGTCCACCAGAGTTGATCCAG TA TGAAAACAATC AAGATTC TT CAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC AAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGGAACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA CCTTGGGAAATATCATGCACTTGTTACAGGCTCATTGACCTTTCACCTGATTGTGTATTCTGGCGCGAAGTATTTTGGGCCTCCGATTTTGTCGAGACTTAATGCATCCGTTTTGGGGTGGCCT] [+] EMBL BQ908572 [ gaCCAATGTTTCCCAGCAGGTGAGTCCGGGACCANGCAAGAGCACACGTACGTATCCAATCACATAGGG TGCAGTTCCGCAATTTTACC GTAGCAAGTGCTTGTATCGTTGCTTATGACAAGTCCACCAGAGTTGANCCAGTTAGTG GAACAATCAAAGATTCTTT CAGGAGTGTATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATATCTGTACATCNTACCAAAAGAAGTGGACCCATTCCTTTCTNGTATTTTTCCATCA CCTGGCCGCA AAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAANAAATAGAGCAAGATTTGAGCTTTGAAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTNTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAGTAGGAACAGGAACTGTAAGATGTAGACAGGCAGT AAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACACCCTTGGGAAATATCATGCACTTGTTACAGGCTCATTGACCTTTCAa ] [+] EMBL BI808389 [ TTC TTTCCAGGAGT TATGTCTGTGGAATTTGTTGGACCTGGAAGTAAGCCACATTTGCATA CTG ACA C AACC TAAGAAGTGGACCCATTCCTTTCT TTATTTTTCCATCACCCTGGCCGCATAAGGAGTAGAAGGTTGTAGTGGTGTCGAAAGTGGCAAGAAAAAATAGAGCAAGATTTGAGCTTT AAAAGATGGAGCCAGATTGAAAGAGTGCAAACCTACTTTAATGGGCATGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAAGGACATGCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAG AGG ACAGGAACTGTAAGATGTAGACAGGCAGTAAAATTTCAGTCCGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACA CCTTGGGAAATATCATGCACTTGTTACAGGCTCAaaaaa ] consensusID : consensus_13505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [GCTTGATCGTTGGCTTATGACAGTCCACCAGAGTTGATCCAGTATGAAAACATCACAGATTCTTCAGGAGTTATGCTCTGTGGAATTTCGTTGGACCTGGAAGTAAGCCACAATTTGCATACTGACACCGACCCAAGACAGTGGACCCACTTCCTTTCTTTATATTGTTCCATCACCCTGGCCGCAACGGAGTACGAAGGTTGTAGTGGTCGTCGAAAGTGGCAGAACACATAATAGAGCCAGATTTGACGCTTCTACAAACGACTGGACGCCAGATTCGAAACGAGTCGCCAACCTACCTTTACATGGGCACTGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACCAGGACATGCTGTTTTTGGATGAACTTGAACCGGATGCCTTACGCATAGTTTCACCTACTGACTTATGTTAGAGGAACAGGAACCTGTAAGACTGTAGACCAGCCAGTAAAATTTCACGTCCGACTACTGACTTCGGCAATTCTATGCCCAAGATTAACCCCTTGGGAAATATCATGCACCTTGTCTACCGGCTCATTGACCTTTCCAAAAAAAAAA] [+] EMBL BI812930 [GCTTGATCGTTGGCTTATGACAGTCCACCAGAGTTGATCCAGTATGAAAACATCACAGATTCTTCAGGAGTTATGCTCTGTGGAATTTCGTTGGACCTGGAAGTAAGCCACAATTTGCATACTGACACCGACCCAAGACAGTGGACCCACTTCCTTTCTTTATATTGTTCCATCACCCTGGCCGCAACGGAGTACGAAGGTTGTAGTGGTCGTCGAAAGTGGCAGAACACATAATAGAGCCAGATTTGACGCTTCTACAAACGACTGGACGCCAGATTCGAAACGAGTCGCCAACCTACCTTTACATGGGCACTGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACCAGGACATGCTGTTTTTGGATGAACTTGAACCGGATGCCTTACGCATAGTTTCACCTACTGACTTATGTTAGAGGAACAGGAACCTGTAAGACTGTAGACCAGCCAGTAAAATTTCACGTCCGACTACTGACTTCGGCAATTCTATGCCCAAGATTAACCCCTTGGGAAATATCATGCACCTTGTCTACCGGCTCATTGACCTTTCCAAAAAAAAAA] consensusID : consensus_13505#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [AGTATAGCCACATTTTGCATACCTTGACACACACCCAAAGAAGTGGACCCACTTCCTTTCGTCTTACTCTGTCTCTCCTATTCACCCCCCGTGGCCGCCAAAACGGAGGTACGCAACGGTTTGTCACGTCGCGTGGTCGATATACGTTGGCCACAGACAAAAATACGAGCATAGATCTGTGAGCTTTAAAACGACTGGAGCCTAGATTGAAAGAGTCGCATAACCTACTTTAATGGGCATCGGTTTTGGGAGAGCTCTCTTAGNTTTTGAAGACAAGGACATCCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAGAGGAACAGGAACTGTAAGATGTAGACAGCAGTAAAATTTCAGTCCGACTACTGACTTCGCAATTCTATGCCAAAGATTAACACCTTGGGAAATATCACGCACTTGTTACAGGCTCAAAAAAAAAAAA] [+] EMBL BQ906651 [AGTATAGCCACATTTTGCATACCTTGACACACACCCAAAGAAGTGGACCCACTTCCTTTCGTCTTACTCTGTCTCTCCTATTCACCCCCCGTGGCCGCCAAAACGGAGGTACGCAACGGTTTGTCACGTCGCGTGGTCGATATACGTTGGCCACAGACAAAAATACGAGCATAGATCTGTGAGCTTTAAAACGACTGGAGCCTAGATTGAAAGAGTCGCATAACCTACTTTAATGGGCATCGGTTTTGGGAGAGCTCTCTTAGNTTTTGAAGACAAGGACATCCTGTTTTTGGATGAATTGAACCGGATGGCCTTACGCATAGTTTCACTACTGACTTATGTTAGAGGAACAGGAACTGTAAGATGTAGACAGCAGTAAAATTTCAGTCCGACTACTGACTTCGCAATTCTATGCCAAAGATTAACACCTTGGGAAATATCACGCACTTGTTACAGGCTCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13505#0 AACCCTACCTCCCCACCTCTCCTCCTCCGGCGGCGCGGAGGGCCGAGAGGGAGGCGGAGC 60 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 CTGGCGTCCCAGGGGGTGGCGCGGGAGGCGGTGTCCGGCGGTGCGGGAGGCGGAGTGCGG 120 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GGGCAGCGCAGGAGTCTGAAGGCGGCGTCGTGTCTGCATCAGCATCGCTTTTCTCCTCCG 180 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 AATCCTCTCCCAAAAAACCGAGCAGAGAAATATGTTGGTAACCAGATCGAGGTTATTTGG 240 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 AGTGTCCCAGTTGCGCAAATCCTCTCTTAAGCATCTGTTGAAGTTCAGGTCTATGTCTGA 300 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TCAGTCATCTGTTCTAGCTGCCGATGATACCGAAACTTCATGGGCTATGTCTGATCAGTC 360 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GTCCGTTCCAGCTGGCAAGGCTACTGAATTTTCATTAGGTGATTTCCCTAAGCATCTGCG 420 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 CAAGCTACCACCATGGATCCAAGAGCCGGCGTCTGTTCATGAAGTTAATGATACCTTGAA 480 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GCACATTGAAGAAAAATCAAACGAATTCAAGCTGCTTTCTTCGGATTGCATGCAGAAGAA 540 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 AATCTTTGAGCAAGAGATTAGACCTTTCTTACTCTCAAGAGGTCTACTGTGCACTAGTCC 600 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TATGGGAAGCTCGTTTGTCAAAGGTTTGCACAAGATGAATCATACAATTCATCACAAGTT 660 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TCCACGATATGTCACCTCTAAGAGCTTGATGAGGCTTCTGACTACACGTAGTCAGAAACA 720 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 ATGGAGACCAATACTCGAGTATCTGGCCGAGGAGCGAGTTATAGTTCTCTTGGACTGGAT 780 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TAATGAGCTATCACTTCTTGAAGTACATTTTTTTGACCATGGGTTGCTTTTGGCACCACA 840 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GTCTGGAGAGCCACATGATGCTCGTGTGTACAAGCTTGAGACTGATGCATGTTACCACAA 900 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GCCTGAGGCATCAAGTGATAAGAAGAAAGATAAATTGAAGAAATCAGTAGTGCCAGTAAC 960 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 CAAGTTATCTTCCCCTGAGAATGAAGAGCAGACATCGGATCCTCTTGGTAGAGCTACTGT 1020 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TGCGTCTGTCCTTTGGGAGTCCATCCAGGCACGCACAAAGTTAATTGAAATCCAGATTGT 1080 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TAAGGGACTGTTTTGCAAAGATTCGGAACACGCTGAAGGTGTTGGACTCTTCATGGCCGT 1140 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TAAAAGGCCTAAAGAACTTGGGATAAGGAAATTGGATGTGGTCACTGACAATGAAGCAAA 1200 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 CTACAATGTTATGATCGGCAAAAGGGATTTGAGCAAGAGTAGCAGTCCTGAAACCTCGAT 1260 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GGCATTTATCCAAGCTGCGAAGGAATACGACATCTGCAAGTGCAGGAGAGAGCCAAGGGA 1320 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 AATGATAAGCCATGTGAATGACCTCGCCAAGGAAGCACACACCAAAAGCACTGACATGTT 1380 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GGATCTTAGAGAGATCATTGAGCGCAAGTCTCCTCAATTTTGGGGAATGCCATTTGTGCG 1440 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 CATCAAGCAAGATGATTCTTCTATAAAAGCAAAATTAGGAGACTCGAAGGTCAGCGACAC 1500 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 ACCTTTTGAAGCAACTAATTATTACATGGAGGTCTGGAGCAAGGCTCAGAAAAATGATGC 1560 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TTTTGAAGGGCTATTGCGTGACCTTGATCCTGACTTTGTGATAGTATTTGCAAATGATGT 1620 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 CTCTGCTGAAGAGGTTATTTCAGAATTAACGTCGTATGATTACCCTTCCTGTATTTGGGA 1680 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 ATCTGGAGCCAATGTTTCCCAGCATTCTATTCCTGACCACAGAGCACACGTACTTATCAA 1740 consensus_13505#1 ------------------------------------------------------------ consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 TCACAAGGGTTGCATTCCGCATTTTACCGGTAGCAAGTGCTTGATCGTTG-CTTATGACA 1799 consensus_13505#1 --------------------------------------GCTTGATCGTTGGCTTATGACA 22 consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GTCCACCAGAGTTGATCCAGTATGAAAACAATCAAGATTCTTCAGGAGTTATG-TCTGTG 1858 consensus_13505#1 GTCCACCAGAGTTGATCCAGTATGAAAACATCACAGATTCTTCAGGAGTTATGCTCTGTG 82 consensus_13505#2 ------------------------------------------------------------ consensus_13505#0 GAATTT-GTTGGACCTGGAAGTA-AGCCACA-TTTGCATAC--TGACAC--AACCAAAGA 1911 consensus_13505#1 GAATTTCGTTGGACCTGGAAGTA-AGCCACAATTTGCATAC--TGACACCGACCCAAGAC 139 consensus_13505#2 -------------------AGTATAGCCACATTTTGCATACCTTGACACACACCCAAAGA 41 **** ******* ********* ****** * **** consensus_13505#0 AGTGGACCCA-TTCCTTTC--TTTATTTT----------TCCATCACCC-TGGCCGC--- 1954 consensus_13505#1 AGTGGACCCACTTCCTTTC--TTTATATTGT--------TCCATCACCC-TGGCCGC--- 185 consensus_13505#2 AGTGGACCCACTTCCTTTCGTCTTACTCTGTCTCTCCTATTCACCCCCCGTGGCCGCCAA 101 ********** ******** *** * * ** * *** ******* consensus_13505#0 AAAGGAG-TA-GAA---GGTTGTAGTG----GT-GTCGAAAG----TGGCAAGAAAAA-- 1998 consensus_13505#1 AACGGAG-TACGAA---GGTTGTAGTG----GTCGTCGAAAG----TGGCAGAACACATA 233 consensus_13505#2 AACGGAGGTACGCAACGGTTTGTCACGTCGCGTGGTCGATATACGTTGGCCACAGACAAA 161 ** **** ** * * * **** * ** ***** * **** * * * consensus_13505#0 -ATA-GAGCA-AGATTTGA-GCTTTAAAAGA----TGGA-GCCAGATTGAAA--GAGT-G 2046 consensus_13505#1 -ATA-GAGCC-AGATTTGACGCTTCTACAAACGACTGGACGCCAGATTCGAAACGAGTCG 290 consensus_13505#2 AATACGAGCATAGATCTGTGAGCTTTA-AAACGACTGGAGCCTAGATTGAAA--GAGTCG 218 *** **** **** ** * * * * **** * ***** ** **** * consensus_13505#0 CA-AACCTACTTTAA--TGGGCA-TGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACAA 2102 consensus_13505#1 CC-AACCTACCTTTACATGGGCACTGGTTTTGGGAGAGCTGTCTTAGGTTTTGAAGACCA 349 consensus_13505#2 CATAACCTACTTTAA--TGGGCATCGGTTTTGGGAGAGCTCTCTTAGNTTTTGAAGACAA 276 * ******* ** * ****** *************** ****** ********** * consensus_13505#0 GGACATGCTGTTTTTGGATGAA-TTGAACCGGATGGCCTTACGCATAGTTTCAC-TACTG 2160 consensus_13505#1 GGACATGCTGTTTTTGGATGAACTTGAACCGGATG-CCTTACGCATAGTTTCACCTACTG 408 consensus_13505#2 GGACATCCTGTTTTTGGATGAA-TTGAACCGGATGGCCTTACGCATAGTTTCAC-TACTG 334 ****** *************** ************ ****************** ***** consensus_13505#0 ACTTATGTTAGAGGAACAGGAAC-TGTAAGA-TGTAGAC-AGGCAGTAAAATTTCA-GTC 2216 consensus_13505#1 ACTTATGTTAGAGGAACAGGAACCTGTAAGACTGTAGACCAGCCAGTAAAATTTCACGTC 468 consensus_13505#2 ACTTATGTTAGAGGAACAGGAAC-TGTAAGA-TGTAGAC--AGCAGTAAAATTTCA-GTC 389 *********************** ******* ******* ************* *** consensus_13505#0 CGACTACTGACTTCGGCAATTCTATGCCAAAGATTAACACCTTGGGAAATATCATGCAC- 2275 consensus_13505#1 CGACTACTGACTTCGGCAATTCTATGCCCAAGATTAACCCCTTGGGAAATATCATGCACC 528 consensus_13505#2 CGACTACTGACTTCG-CAATTCTATGCCAAAGATTAACACCTTGGGAAATATCACGCAC- 447 *************** ************ ********* *************** **** consensus_13505#0 TTGT-TACAGGCTCATTGACCTTTCACCTGATTGTGTATTCTGGCGCGAAGTATTTTGGG 2334 consensus_13505#1 TTGTCTACCGGCTCATTGACCTTTCCAAAAAAAAAA------------------------ 564 consensus_13505#2 TTGT-TACAGGCTCAAAAA------AAAAAAA---------------------------- 472 **** *** ****** * * consensus_13505#0 CCTCCGATTTTGTCGAGACTTAATGCATCCGTTTTGGGGTGGCCT 2379 consensus_13505#1 --------------------------------------------- consensus_13505#2 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||