These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 836 fasta sequence [TGTTTTTTTTTTTTTTTTTTAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC-TTCTTCTTACTCCCAACGA-GGATGTAACTATAGCTCATGCTCTATGC-TTCTAAAC-TCTTTTCTTATTAAATAAAGTGGG-CATGAGTTCTAAAAAAAAAAAAAA--CATAGCA-CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG-CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT-CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC] [-] EMBL CB967443 [TGTTTTTTTTTTTTTTTTTTAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTCAAAAAAAAAAAAA CATAGCA CATCGATTAACACAT CACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGC GTCTCGCCGa ] [+] EMBL CB630945 [ TAGCCAAACCAGTTTAATATATTCATCACTTCCTTTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGA ] [+] EMBL BE607420 [ CCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACNGCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGA ] [+] EMBL BE607392 [ CCAAACCAGTTTAATATATTCATCACTTCATCTGTGGATACNGCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGA ] [-] EMBL CB630944 [ CCAGTTTAATATATTCATCACTTCATCTGTGGATACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCGCATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAATTAAAGAGAA ] [+] EMBL CA758942 [ GTTTAATATATTCATCACTTCATCTGTGGATAGGCGATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC] [-] EMBL BE041101 [ gGGATACCCCATTCCAAGCATAGTCCGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAGGACTTTCTTCTTACTCCCAACGAGGGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATANAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA ] [-] EMBL CB619280 [ TGAAACCAATAACATAGCACATCAGGAGAGGAC TTCTTCTTACTCCCAACGA GGATGTAACTATAGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGA ] [-] EMBL BE040803 [ ACA AGCCCCTCGGGAGAGGCC TTCTTCTTACTCCCACCGA GGATGGAACTATAGCTCATGCTCTAAGC TTCTAAACTTCCTTTCTTATTAAATAAAGTGGG CATGAGTTCCAAAAAAAAAAAAAA CATAGCA CATCGATTAACCCATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAACCAGA ] [-] EMBL BE040887 [ ccTCAGGAGAGGAT TTTTTCTTACTCCCAACGA GGAT TAACTAAAGCTCATGCTCTA GCTTTCTAAAC TCTTTTCCTATTTAATAAAGTGGGCCATGAGTTCTAAAAAAAAAAAAAAACCATAGCACCATCGATTTACACATCACACACACACACACCATATATATTGGTCAAGCCCCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATTAAGCT CAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAGAGCttt ] [+] EMBL BE040365 [ AGCTCATGCTCTATGC TTCTAAAC TCTTTTCTTATTAAATAAAGTGGG CATGAGTTCTAAAAAAAAAAAAAA CATAGCA CATCGATTAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAGCTTCTTTATTTTTCTGCATCACAATTCACACG CACACATGATAGATGGTAGATGCAGGCAGGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCTTCTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCTGCTGCTCTTCTCTTCCAGGTCAGGGTACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTCTGTAATT ] [-] EMBL BE228717 [ ACACGCCACACATGATAGATGGTAGATGCAGGCAGGCATNTNAACAGTTGCAAGGGNTGCACCTGCAGNTGGAACCGCAGCTGCAGCCATGGGCGGTCTCGCCGGANTCTGCGGCCGCCTCAAACTGCTGCGCNTTNTTCTCCGGCGCCACACCCAGCACGACGGTGGCCTTGGTGCNGCTGCTCTTCTCTTCCAGGTCAGGGNACTTCTTTCCGCAGGAGCAGTTTGAGCCGCAGCNGCAGCTAGATCCACAGCTGCAAGACATCTTCTCTCAGTNTGTAATTAAGCTCCAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAAGAAG ] consensusID : consensus_13509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTATCTGATTATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGGCGCGAATGCATCCAACCACAATTAACCACTGCTAAGCTACGGGCCCCCACTTCACTTGCCGGGGACGAAGTTGGGGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA] [+] EMBL CB684580 [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTATCTGATTATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGGCGCGAATGCATCCAACCACAATTAACCACTGCTAAGCTACGGGCCCCCACTTCACTTGCCGGGGACGAAGTTGGGGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13509#0 TGTTTTTTTTTTTTTTTTTTAGCCAAACCAGTTTAATATATTCATCACTTCATCTGTGGA 60 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 TACACCATTACAAGCATAGTACGTGAATAGTGAAACCAATAACATAGCACATCAGGAGAG 120 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 GACTTCTTCTTACTCCCAACGAGGATGTAACTATAGCTCATGCTCTATGCTTCTAAACTC 180 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 TTTTCTTATTAAATAAAGTGGGCATGAGTTCTAAAAAAAAAAAAAACATAGCACATCGAT 240 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 TAACACATCACACACACACACACCATATATATTGGTCAAGCACCAACCCAAATGGCCAAG 300 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 CTTCTTTATTTTTCTGCATCACAATTCACACGCACACATGATAGATGGTAGATGCAGGCA 360 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 GGCATCTTAACAGTTGCAAGGGTTGCACCTGCAGCTGGAACCGCAGCTGCAGCCATGGGC 420 consensus_13509#1 -----------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG-C 36 * ** ** * ** * * * * consensus_13509#0 GGTCTCGCCGGACTCTGCGGCCGCCTCAAACTGCTGCGCCT-TCTTCTCCGGCGCCACAC 479 consensus_13509#1 TCTCTCTCTCTATCTGATTATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGA 96 **** * * * *** ** ** ***** ** * * * consensus_13509#0 CCAGCACGACGGTGGCCTTGG-TGC-TGCTGCTCTTCTCTTCCAG-GTCAGGGTACTTCT 536 consensus_13509#1 CAACGAACTCGCTGGGCGCGAATGCATCCAACCACAATTAACCACTGCTAAGCTACGGGC 156 * * * ** *** * * *** * * * * *** * * * *** consensus_13509#0 TTCCGCAGGAGCAGTTTGAGCCGCAGCTGCAGCTAGATCCACAGCTGCAA-----GACAT 591 consensus_13509#1 CCCCACTTCACTTGCCGGGGACGAAGTTGGGGGCGTACGCCCAGGCGTTGTTGTTGACGG 216 ** * * * * * ** ** ** * * * *** * *** consensus_13509#0 CTTCTCTCAGTCTGTAATTAAGCTCAAGCAACTGAAGATGAAATCAACTAAGGAGAAGAA 651 consensus_13509#1 GGTCGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 276 ** * ** **** ** * ** * ** ** * * ** *** consensus_13509#0 GAAGAGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 711 consensus_13509#1 AGAGAGA-----GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 331 **** * * * *** ****************************** consensus_13509#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGTCT 771 consensus_13509#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------------ 379 ************************************************ consensus_13509#0 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 831 consensus_13509#1 ------------------------------------------------------------ consensus_13509#0 CTCTC 836 consensus_13509#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||