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Oryza sativa
cluster # 13519 cluster # 13519       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13519#0 length = 1671 sequences # 5  
consensus_13519#1 length = 733 sequences # 5  
consensus_13519#2 length = 638 sequences # 2  
consensus_13519#3 length = 548 sequences # 1  

consensusID : consensus_13519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1671
fasta sequence
                              [CAATAATGCCAAACATCACACGCTAAGCCTGCCTGCTCTGCTAATTCCCCTACGCAACACAATCCCCTTCTCTCCTTCCCCGGAAGAAGAACAAAGAGCAGCTGAGGCGAGCAAGCAAAGGCAACACCAAGAAAGCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCT-CATCCGCAACCAC-CCCGAAGGCCCAACCAAGATCCACAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGGCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATT-GGATGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTGGAGCCGGTACCGGAAGGCTCACTTATGGATCAGTTCTTGAAAGGAGATGAGGCTTTCCGGAAATCTAGGCTTAAGCTAATCGCGAACATAGTTAGAGGGCCTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGTAGGGCTCTTACGTGCAAGTATACTCAGGGATCAAACTTCATTGAAATCGATGTGGATGTTGGATCTTCTATTGTCGCAAACGCAATTGTTCATTTGGCGTTTGGTTACGTGCAGACGCTAACAGTAGATCTAGCATTCCTTATTGAGGGTCAGACCGAATCAGAGCTCCCCGAGAGACTTCTTGGAGCTGTGAGGTTCTCTGAGTTGAATCC-GGGTTCGGCTGGTGTGTATGAAGTGCCATCTGAGGAGCAACAAGAAAGTGCGCCTTTTCTGCCGGCAAGATTGTGGCAGGGTTTTTCAAACATGTTACATAACCCTGGAAATTCCAGGGAGCCATCCTCTACTTCACAAAGCACTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCACAAAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATGGAGATGCTGATGAAAA-CAC-TAAATG-ATTTTCTTGAATCTCCTACCAGTGGAACTTGATGCAGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTC-ATTAGTTGGGGTTAATATATTAGTCCACCATTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCATTCTCGTCTGGAAAAAAATGTAAACTGAATGGAATCAAATGCAGAGAAGATA]

[+] EMBL AK068444             [CAATAATGCCAAACATCACACGCTAAGCCTGCCTGCTCTGCTAATTCCCCTACGCAACACAATCCCCTTCTCTCCTTCCCCGGAAGAAGAACAAAGAGCAGCTGAGGCGAGCAAGCAAAGGCAACACCAAGAAAGCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCT CATCCGCAACCAC CCCGAAGGCCCAACCAAGATCCACAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGCCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATT GGATGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTGGAGCCGGTACCGGAAGGCTCACTTATGGATCAGTTCTTGAAAGGAGATGAGGCTTTCCGGAAATCTAGGCTTAAGCTAATCGCGAACATAGTTAGAGGGCCTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGTAGGGCTCTTACGTGCAAGTATACTCAGGGATCAAACTTCATTGAAATCGATGTGGATGTTGGATCTTCTATTGTCGCAAACGCAATTGTTCATTTGGCGTTTGGTTACGTGCAGACGCTAACAGTAGATCTAGCATTCCTTATTGAGGGTCAGACCGAATCAGAGCTCCCCGAGAGACTTCTTGGAGCTGTGAGGTTCTCTGAGTTGAATCC GGGTTCGGCTGGTGTGTATGAAGTGCCATCTGAGGAGCAACAAGAAAGTGCGCCTTTTCTGCCGGCAAGATTGTGGCAGGGTTTTTCAAACATGTTACATAACCCTGGAAATTCCAGGGAGCCATCCTCTACTTCACAAAGCACTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCACAAAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATGGAGATGCTGATGAAAA CAC TAAATG ATTTTCTTGAATCTCCTACCAGTGGAACTTGATGCAGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTC ATTAGTTGGGGTTAATATATTAGTCCACCATTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCATTCTCGTCTGGAAAAAAATGTAAACTGAATGGAATCAAATGCAGAGAAGAT ]
[+] EMBL C26551               [                                                                                                                                                       CTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTNCCTNCCTTCCACANCGCTNGTCTATGTTCGTCCTGCTGAATCCGTAACCACGCCCGAA GCCCAACCAAGATCCACAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGNAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGGCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATTNGGATGAAAAGCCCCG GAGGATATGCGA ATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSR22851A            [                                                                                                                                                                                          TCCCTNCCACAACGCTCGCCTCTGTTCGTCCNCCT CATCCGAAACCAC CCCGAAGGCCCAACCAAGATCCACAGATGGNTTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTNNCCCAATGGCTGGGCTACTCNCCCAGGGGACACATTCATGGTCAGAGANCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGNCTCTCGGGTTTGATT GGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU065851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCGGAAGGCTCACTTATGGATCAGTTCTTGAAAGGAGATGAGGCTTTCCGGAAATNTAGGCTTAAGCTAATCGCGAACATAGTTAGAGGGCCTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGTAGGGCTCTTACGTGCAAGTATACTCAGGGATCAAACTTCATTGAAATCGATGTGGATGTTGGATCTTCTATTGTCGCAAACGCAATTGTTCATTTGGCGTTTGGTTACGTGCAGACGCTAACAGTAGATCTAGCATTCCTTATTGAGGGTCAGACCGAATCAGAGCTCCCCGAGAGACTTCTTGGAGCTGTGAGGTTCTCTGAGTTGAATCCGGGGTTCGGCTGGTGTGTATn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU032747             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                aTTTGCACAATGGAGATGCTGATGAAAACCACTTAAATGAATTATCTTGAATCACCTACCAGTGGATCTTGATGCAGCTGCACTNTCGTCGAGACTCCAANAAGGATATCTTCAATTAGTTGGGGTTAATATATTAGNCCACCATTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTNATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTNAAAATTATGCATNCTCCANTACCCTGTACATATTACANTCAAATGCNGNNATTGTTATGTGTGTCCCATTCTCGTCTGGANAAAAATGTAAACTGAATGGNATCAAATGCAGAGAAAATA]


>consensus_13519#0 CAATAATGCCAAACATCACACGCTAAGCCTGCCTGCTCTGCTAATTCCCCTACGCAACAC AATCCCCTTCTCTCCTTCCCCGGAAGAAGAACAAAGAGCAGCTGAGGCGAGCAAGCAAAG GCAACACCAAGAAAGCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAA GGCCCAACCAAGATCCACAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGG AGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCT GGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGGCCTGATTATCTTGCAACCAAGG TGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATTGGATGAAAAGCC CCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACG GCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCA AGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTGGAGCCGGTACCGGAAGGCTCAC TTATGGATCAGTTCTTGAAAGGAGATGAGGCTTTCCGGAAATCTAGGCTTAAGCTAATCG CGAACATAGTTAGAGGGCCTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCA TATTGGGTAGGGCTCTTACGTGCAAGTATACTCAGGGATCAAACTTCATTGAAATCGATG TGGATGTTGGATCTTCTATTGTCGCAAACGCAATTGTTCATTTGGCGTTTGGTTACGTGC AGACGCTAACAGTAGATCTAGCATTCCTTATTGAGGGTCAGACCGAATCAGAGCTCCCCG AGAGACTTCTTGGAGCTGTGAGGTTCTCTGAGTTGAATCCGGGTTCGGCTGGTGTGTATG AAGTGCCATCTGAGGAGCAACAAGAAAGTGCGCCTTTTCTGCCGGCAAGATTGTGGCAGG GTTTTTCAAACATGTTACATAACCCTGGAAATTCCAGGGAGCCATCCTCTACTTCACAAA GCACTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCACA AAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTG CTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATG GAGATGCTGATGAAAACACTAAATGATTTTCTTGAATCTCCTACCAGTGGAACTTGATGC AGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTCATTAGTTGGGGTTAATATATTA GTCCACCATTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCAT GTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATG CATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCAT TCTCGTCTGGAAAAAAATGTAAACTGAATGGAATCAAATGCAGAGAAGATA



consensusID : consensus_13519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 733
fasta sequence
                              [GAATCCAGAGCTCCCCCGAGAGACTTCTTGGAGCTGTGAGNTTCTCTGAGTTGAATCCGGGTTCGGCTGGTGTGTATGAAGTGCCATCTGAGGAGCAAC-AAG-AAAGTGCGCCTTTTCTGCCGGCAAGATTGTGGCAGG-GTTTTTCAAACATGT-TACATANCCCTGGAAATTCCAGGGAGCCATCCTCT-ACTTCACAAAGCA-CTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCACAAAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATGGAGATGCTGATGAAAACA-CTAAATGATTTTCTTGAATCTCCTACCAGTGGAACTTGATGCAGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTCATTAGTTGGGGTTAATATATTAGTCCACCA-TTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTA]

[+] EMBL AU092345             [GAATCCAGAGCTCCCCCGAGAGACTTCTTGGAGCTGTGAGNTTCTCTGAGTTGAATCCGGGTTCGGCTGGTGTGTATGAAGTGCCATCTGAGGAGCAAC AAG AAAGTGCGCCTTTTCTGCCGGCAAGATTGTGGCAGG GTTTTTCAAACATGT TACATANCCCTGGAAATTCCAGGGAGCCATCCTCT ACTTCACAAAGCA CTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCACAAAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATGGAGATGCTGATGAAAACA CTAAATGATTTTCTTGAATCTCCTACCAGTGGAACTTGATGCAGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTCATTAGTTGGGGTTAATATATTAGTCCACCA TTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCAAAAAAAAAAAAAAAAAAAAA                                    ]
[+] EMBL BI795744             [                                                                   TGTTGT TATGAAGTCCCATGTGAGGACCAACAAAGAAAAGTGCGCCTTTTCTGCCGCCAAGATTGTGCCAGGTTTTTTTCAAACATGTGTACATAACCCTGGAAATTCCAGGGAGCCAT CTCTGACTTCAC AAGCACCTAATGGGAG TTACACCAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCAC AAGAAGATGTGGATGACCATACT CTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTGCTACCGGGAGTTTTGAC AAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATGGAGATGCTGATGAAAACACCTAAATGATTTTCTTGAATCTCCTACCAGTGGAACTTGATGCAGCTGCACTGTCGTCGAAACTCCCAAAAGGATATCTTCATTAGTTGGGGTTAATATATTAGTCCACCACTTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCAAAAAA                                                    ]
[-] EMBL CF276900             [                                                                                                                                                                                                                                                                       AAAGAAAATGTGGATGACAATACTGTTGGGAGCTTGTTCAAAAAAAATGGGTACAAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGCTTCTAACGGGAGTTTGCACAATGGAAATGTTGATGAAAACA CTAAATGATTTTCTTGAATTTCCTACCAGTGGAACTTAATGCAGTTGCACTGTCGTCGAAACTCCAAAAAGGATATTTTCATTAGTTGGGGTTAATATATTAGTCCCCCA TTGTGTTGCAATTCGTTGAAACAATGATCAGGCTCAGGTAGTTATTTTCCATGTTATCATGCCCCTGACTGGGGCTTTTTTGTGTGCCCCCACATTTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCAAAAAAAAAAAAAAAAAAAA                                     ]
[-] EMBL CF276935             [                                                                                                                                                                                                                                                                                                                                           GAGTTTTGCCAAAGAAGATCCAGAAGAGGCTTCTAACGGGAGTTTGCACAATGGAGATGTTGATGAAAACA TTAAATGATTTTCTTGAATTTCCTACCAGTGGAACTTAATGCAGTTGCACTGTCGTCGAAACTCCAAAAAGGATATTTTCATTAGTTGGGGTTAATATATTAGTCCACCA TTGTGTTGCAATTCGTTGAAACAATGATCAGGCTCAGGTAGTTATTTTCCATGTTATCATGACCCTGACTGGGGCTTTTTTGTGTGCCCCCACATTTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTA]
[+] EMBL AU031869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACATCTGTTGTAAAAATTATGNATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCAAAAAAAAAAAAA                                            ]


>consensus_13519#1 GAATCCAGAGCTCCCCCGAGAGACTTCTTGGAGCTGTGAGNTTCTCTGAGTTGAATCCGG GTTCGGCTGGTGTGTATGAAGTGCCATCTGAGGAGCAACAAGAAAGTGCGCCTTTTCTGC CGGCAAGATTGTGGCAGGGTTTTTCAAACATGTTACATANCCCTGGAAATTCCAGGGAGC CATCCTCTACTTCACAAAGCACTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATA CTAGAGAAAGTTTGCACAAAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAG AAGATGGGTACGAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTA ACGGGAGTTTGCACAATGGAGATGCTGATGAAAACACTAAATGATTTTCTTGAATCTCCT ACCAGTGGAACTTGATGCAGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTCATTA GTTGGGGTTAATATATTAGTCCACCATTGTGTTGCAATTCGTTGAAACGATGATCAGGCT CAGGTAGCTATTCTCCATGTTATCATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACA TCTGTTGTAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAA TTGTTATGTGTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCC GTTACGTAGCGTA



consensusID : consensus_13519#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence
                              [GAAGGAGTAGAAACTCTCTCTCCCTCCCTTCCCAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGCCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATTGGATGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTGGAGCCGGTACCGGAAGGCTCACTTATGGGATCAGTTCTTGAAAGGAGATGAGGCTNTCCGGAAATCTAGGCTTAAGCTAATCGCGAACATAGTTAGAGGGCCTTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGGTAGGGC]

[+] EMBL CF276934             [GAAGGAGTAGAAACTCTCTCTCCCTCCCTTCCCAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGCCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATTGGATGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTGGAGCCGGTACCGGAAGGCTCACTTATGGGATCAGTTCTTGAAAGGAGATGAGGCTNTCCGGAAATCTAGGCTTAAGCTAATCGCGAACATAGTTAGAGGGCCTTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGGTAGGGC]
[+] EMBL CF276899             [GAAGGAGTAGAAACTCTCTCTCCCTCCCTTCCCAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGCCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGGTTTGATTGGATGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTGGAGCCGGTCCCGGAAGGCTCACTTAT GGATCAGTTCTTGAAAGGAGAT                                                                                                             ]


>consensus_13519#2 GAAGGAGTAGAAACTCTCTCTCCCTCCCTTCCCAACGCTCGCCTCTGTTCGTCCTCCTCA TCCGCAACCACCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGT GAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGAC CCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGTCAGAGGC CCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTC GGGTTTGATTGGATGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCAT CGTGTGAGGAAAGCCATCGACGGCGAGGTTTTGCGTGGTAATCAGCCTTTCGTCTGGGCT TTCAACCTGCAACTGCCCAGCAAGGATAATTACAGTGCTATATTCTACTTTGTGTCGCTG GAGCCGGTACCGGAAGGCTCACTTATGGGATCAGTTCTTGAAAGGAGATGAGGCTNTCCG GAAATCTAGGCTTAAGCTAATCGCGAACATAGTTAGAGGGCCTTTGGATTGTTCGAACAG CTGTGGGAGAACAAGCTATTTGCATATTGGGGTAGGGC



consensusID : consensus_13519#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [GCAAGCAAAGGCAACACCAAGAAAGCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGNCAGAGGCCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGCTTTGATTGGNTGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGNGAGGNTTTGCGNGGNAATCAGCCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATNANNACNGCGCTATATTTCTACTTTGAGNCGCTTGNANCCGCCACCGGTANGGCCTCACTT]

[+] EMBL CA764968             [GCAAGCAAAGGCAACACCAAGAAAGCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGCTGGGCTACTCCCCCAGGGGACACATTCATGGNCAGAGGCCCTGATTATCTTGCAACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGCTTTGATTGGNTGAAAAGCCCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGACGGNGAGGNTTTGCGNGGNAATCAGCCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAGCAAGGATNANNACNGCGCTATATTTCTACTTTGAGNCGCTTGNANCCGCCACCGGTANGGCCTCACTT]


>consensus_13519#3 GCAAGCAAAGGCAACACCAAGAAAGCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTC CCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCACCCCGAAGGCC CAACCAAGATCCACAGGTGAGATGGATTGTTCCAATGGTGAGGTTCAGCATCAGTGGATG GAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCTGACAACTGCCCCAATGGC TGGGCTACTCCCCCAGGGGACACATTCATGGNCAGAGGCCCTGATTATCTTGCAACCAAG GTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCCTCTCGGCTTTGATTGGNTGAAAAGC CCCGCGAAGATATGCGAGATTCTGAATAACAAGAGTCATCGTGTGAGGAAAGCCATCGAC GGNGAGGNTTTGCGNGGNAATCAGCCCTTTCGTCTGGGCTTTCAACCTGCAACTGCCCAG CAAGGATNANNACNGCGCTATATTTCTACTTTGAGNCGCTTGNANCCGCCACCGGTANGG CCTCACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      CAATAATGCCAAACATCACACGCTAAGCCTGCCTGCTCTGCTAATTCCCCTACGCAACAC 60
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      --------------------------------------------------GCAAGCAAAG 10
consensus_13519#0      AATCCCCTTCTCTCCTTCCCCGGAAGAAGAACAAAGAGCAGCTGAGGCGAGCAAGCAAAG 120
consensus_13519#1      ---------------------------------------------------GAATCCAGA 9
                                                                                   

consensus_13519#2      ----------GAAG-------GAGTAGAAA------------------------------ 13
consensus_13519#3      GCAACACCAAGAAA-------GCATCCAAGATCTCTCTCTCTCTCTCT------------ 51
consensus_13519#0      GCAACACCAAGAAA-------GCATCCAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCT 173
consensus_13519#1      GCTCCCCCGAGAGACTTCTTGGAGCTGTGAGNTTCTCTGAGTTGAATCCGGGTTCGGCTG 69
                                 **         *                                      

consensus_13519#2      --CTCTCTCTCCCTCCCTTCC-CAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCA 70
consensus_13519#3      --CTCTCTCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCA 109
consensus_13519#0      CTCTCTCTCTCCCTCCCTTCCACAACGCTCGCCTCTGTTCGTCCTCCTCATCCGCAACCA 233
consensus_13519#1      GTGTGTATGAAGTGCCATCTGAGGAGCAACAAGAAAGTGCGCCTTTTCTGCCGGCAAGAT 129
                          * * *      ** *      *    *      ** ** * *      * ****   

consensus_13519#2      CCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATG-GTGAGGTTCAG 129
consensus_13519#3      CCCCGAAGGCCCAACCAAGATCCACAGGTGAGATGGATTGTTCCAATG-GTGAGGTTCAG 168
consensus_13519#0      CCCCGAAGGCCCAACCAAGATCCACAG-----ATGGATTGTTCCAATG-GTGAGGTTCAG 287
consensus_13519#1      TGTGGCAGGGTTTTTCAAACATGTTACATANCCCTGGAAATTCCAGGGAGCCATCCTCTA 189
                           * ***      ***       *         *    *****  * *  *   **  

consensus_13519#2      CATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCT---GAC 186
consensus_13519#3      CATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCT---GAC 225
consensus_13519#0      CATCAGTGGATGGAGGATGTCAAGTCAGGAGGAGCAGTCCCATTTCTTGACCCT---GAC 344
consensus_13519#1      CTTCA-CAAAGCACTAATGGGAGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAA 248
                       * ***    *      ***  *  * *     ** **   *   *    *  **   ** 

consensus_13519#2      AACTGCCCCAATGGC----TGGGCTAC--TCCCCCAGGGGACACATTCATGGTCAGAGGC 240
consensus_13519#3      AACTGCCCCAATGGC----TGGGCTAC--TCCCCCAGGGGACACATTCATGGNCAGAGGC 279
consensus_13519#0      AACTGCCCCAATGGC----TGGGCTAC--TCCCCCAGGGGACACATTCATGGTCAGAGGG 398
consensus_13519#1      AGTTTGCACAAAGAAGATGTGGATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGG 308
                       *  *  * *** *      ***   **  * *  * ***  *    ***  *     ** 

consensus_13519#2      CCTGATTATCTTGC----AACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCC 296
consensus_13519#3      CCTGATTATCTTGC----AACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCC 335
consensus_13519#0      CCTGATTATCTTGC----AACCAAGGTGAAGATACCAGGTGGGGAGTATCTTCTAAAGCC 454
consensus_13519#1      TACGAGAGTGCTACCGGGAGTTTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGT 368
                          **   *  * *    *     *   ****    *     *  *  ***         

consensus_13519#2      TCTCGGGTTTGATTGGATGA-AAAGCCCCGCGAAGATATGC--GAGATTCTGAATAACAA 353
consensus_13519#3      TCTCGGCTTTGATTGGNTGA-AAAGCCCCGCGAAGATATGC--GAGATTCTGAATAACAA 392
consensus_13519#0      TCTCGGGTTTGATTGGATGA-AAAGCCCCGCGAAGATATGC--GAGATTCTGAATAACAA 511
consensus_13519#1      TTGCACAATGGAGATGCTGATGAAAACACTAAATGATTTTCTTGAATCTCCTACCAGTGG 428
                       *  *    * **   * ***  **  * *   * *** * *  **   **  *  *    

consensus_13519#2      GAGTCATCGTGTGAGGAAAGCCATCGA-----CGGCGAGGTTTTGCGTGGTAATCAGCC- 407
consensus_13519#3      GAGTCATCGTGTGAGGAAAGCCATCGA-----CGGNGAGGNTTTGCGNGGNAATCAGCCC 447
consensus_13519#0      GAGTCATCGTGTGAGGAAAGCCATCGA-----CGGCGAGGTTTTGCGTGGTAATCAGCC- 565
consensus_13519#1      AACTTGATGCAGCTGCACTGTCGTCGAAACTCCAAAAAGGATATCTTCATTAGTTGGGGT 488
                        * *    *     * *  * * ****     *    *** * *       * *  *   

consensus_13519#2      TTTCGT-CTGGGCTTTCAACCTGCAACTGCCCA--GCAAGGATAATTACAGTGCTATATT 464
consensus_13519#3      TTTCGT-CTGGGCTTTCAACCTGCAACTGCCCA--GCAAGGATNANNACNGCGCTATATT 504
consensus_13519#0      TTTCGT-CTGGGCTTTCAACCTGCAACTGCCCA--GCAAGGATAATTACAGTGCTATATT 622
consensus_13519#1      TAATATATTAGTCCACCATTGTGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGC 548
                       *    *  * * *   **   **   *    *   * ** *** *  *        **  

consensus_13519#2      -CTACTTTGTGTCGCT-GGAGCCGGTACCGGAAGG--CTCACTTATGGGATCAGTTCTTG 520
consensus_13519#3      TCTACTTTGAGNCGCTTGNANCCGCCACCGGTANGGCCTCACTT---------------- 548
consensus_13519#0      -CTACTTTGTGTCGCT-GGAGCCGGTACCGGAAGG--CTCACTTATGG-ATCAGTTCTTG 677
consensus_13519#1      TATTCTCCATGTTATC-ATGACCCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTG 607
                         * **    *          **   ** **      **    *                

consensus_13519#2      AAAGGAGATGAGGCTNTCCGGAAATCTAGGCTTA----AGCTAATCGCGAACATAGTTA- 575
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      AAAGGAGATGAGGCTTTCCGGAAATCTAGGCTTA----AGCTAATCGCGAACATAGTTA- 732
consensus_13519#1      TAAAAATTATGCATACTCCATTACCCTGTACATATTACATTCAAATGCAGAAATTGTTAT 667
                                                                                   

consensus_13519#2      GAGGGCCTTTGGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGGTAG 635
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GAGGGCCTT-GGATTGTTCGAACAGCTGTGGGAGAACAAGCTATTTGCATATTGGGTAGG 791
consensus_13519#1      GTGTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGT 727
                                                                                   

consensus_13519#2      GGC--------------------------------------------------------- 638
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GCTCTTACGTGCAAGTATACTCAGGGATCAAACTTCATTGAAATCGATGTGGATGTTGGA 851
consensus_13519#1      AGCGTA------------------------------------------------------ 733
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      TCTTCTATTGTCGCAAACGCAATTGTTCATTTGGCGTTTGGTTACGTGCAGACGCTAACA 911
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GTAGATCTAGCATTCCTTATTGAGGGTCAGACCGAATCAGAGCTCCCCGAGAGACTTCTT 971
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GGAGCTGTGAGGTTCTCTGAGTTGAATCCGGGTTCGGCTGGTGTGTATGAAGTGCCATCT 1031
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GAGGAGCAACAAGAAAGTGCGCCTTTTCTGCCGGCAAGATTGTGGCAGGGTTTTTCAAAC 1091
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      ATGTTACATAACCCTGGAAATTCCAGGGAGCCATCCTCTACTTCACAAAGCACTAATGGG 1151
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      AGTTTACACAAAGAAGATGCGGATGAGAATACTAGAGAAAGTTTGCACAAAGAAGATGTG 1211
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GATGACAATACTGCTGGGAGCTTGCTCAAAGAAGATGGGTACGAGAGTGCTACCGGGAGT 1271
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      TTTGACAAAGAAGATACAGAAGAGGACTCTAACGGGAGTTTGCACAATGGAGATGCTGAT 1331
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      GAAAACACTAAATGATTTTCTTGAATCTCCTACCAGTGGAACTTGATGCAGCTGCACTGT 1391
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      CGTCGAAACTCCAAAAAGGATATCTTCATTAGTTGGGGTTAATATATTAGTCCACCATTG 1451
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      TGTTGCAATTCGTTGAAACGATGATCAGGCTCAGGTAGCTATTCTCCATGTTATCATGAC 1511
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      CCTGACTGGGGCTTTCTTGTGTGCCCCCACATCTGTTGTAAAAATTATGCATACTCCATT 1571
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ------------------------------------------------------------
consensus_13519#3      ------------------------------------------------------------
consensus_13519#0      ACCCTGTACATATTACATTCAAATGCAGAAATTGTTATGTGTGTCCCATTCTCGTCTGGA 1631
consensus_13519#1      ------------------------------------------------------------
                                                                                   

consensus_13519#2      ----------------------------------------
consensus_13519#3      ----------------------------------------
consensus_13519#0      AAAAAATGTAAACTGAATGGAATCAAATGCAGAGAAGATA 1671
consensus_13519#1      ----------------------------------------
                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)